data_6G34
#
_model_server_result.job_id            DapNC-A_-NRoNg9YgZtOzw 
_model_server_result.datetime_utc      '2024-10-28 11:30:05' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6g34 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":401}' 
#
_entry.id    6G34 
#
_exptl.entry_id    6G34 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              392.15 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (2R,3R,4S,5R)-2-(4-AMINO-5-IODO-7H-PYRROLO[2,3-D]PYRIMIDIN-7-YL)-5-(HYDROXYMETHYL)TETRAHYDROFURAN-3,4-DIOL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6G34 
_cell.length_a            78.58 
_cell.length_b            78.74 
_cell.length_c            79.73 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6G34 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C11 H13 I N4 O4' 
_chem_comp.formula_weight    392.15 
_chem_comp.id                5ID 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (2R,3R,4S,5R)-2-(4-AMINO-5-IODO-7H-PYRROLO[2,3-D]PYRIMIDIN-7-YL)-5-(HYDROXYMETHYL)TETRAHYDROFURAN-3,4-DIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     5-IODOTUBERCIDIN 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O5' C5' 5ID sing 1 n n 
O5' H5' 5ID sing 2 n n 
C5' C4' 5ID sing 3 n n 
C5' "H5'1" 5ID sing 4 n n 
C5' "H5'2" 5ID sing 5 n n 
C4' O4' 5ID sing 6 n n 
C4' C3' 5ID sing 7 n n 
C4' H4' 5ID sing 8 n n 
O4' C1' 5ID sing 9 n n 
C1' N9 5ID sing 10 n n 
C1' C2' 5ID sing 11 n n 
C1' H1' 5ID sing 12 n n 
N9 C8 5ID sing 13 n y 
N9 C4 5ID sing 14 n y 
C8 C7 5ID doub 15 n y 
C8 H8 5ID sing 16 n n 
C7 C5 5ID sing 17 n y 
C7 IAE 5ID sing 18 n n 
C5 C6 5ID doub 19 n y 
C5 C4 5ID sing 20 n y 
C6 N1 5ID sing 21 n y 
C6 N6 5ID sing 22 n n 
N1 C2 5ID doub 23 n y 
C2 N3 5ID sing 24 n y 
C2 H2 5ID sing 25 n n 
N3 C4 5ID doub 26 n y 
N6 H6N1 5ID sing 27 n n 
N6 H6N2 5ID sing 28 n n 
C2' O2' 5ID sing 29 n n 
C2' C3' 5ID sing 30 n n 
C2' H2' 5ID sing 31 n n 
O2' HA 5ID sing 32 n n 
C3' O3' 5ID sing 33 n n 
C3' H3' 5ID sing 34 n n 
O3' HB 5ID sing 35 n n 
#
_atom_sites.entry_id                     6G34 
_atom_sites.fract_transf_matrix[1][1]    0.012726 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.0127 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012542 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 5ID A 1 401 1 5ID ITU . 
C 3 IOD A 1 402 1 IOD IOD . 
D 4 EPE A 1 403 1 EPE EPE . 
E 5 PO4 A 1 404 1 PO4 PO4 . 
F 6 HOH A 1 501 216 HOH HOH . 
F 6 HOH A 2 502 187 HOH HOH . 
F 6 HOH A 3 503 167 HOH HOH . 
F 6 HOH A 4 504 115 HOH HOH . 
F 6 HOH A 5 505 214 HOH HOH . 
F 6 HOH A 6 506 174 HOH HOH . 
F 6 HOH A 7 507 106 HOH HOH . 
F 6 HOH A 8 508 80 HOH HOH . 
F 6 HOH A 9 509 217 HOH HOH . 
F 6 HOH A 10 510 49 HOH HOH . 
F 6 HOH A 11 511 182 HOH HOH . 
F 6 HOH A 12 512 128 HOH HOH . 
F 6 HOH A 13 513 152 HOH HOH . 
F 6 HOH A 14 514 9 HOH HOH . 
F 6 HOH A 15 515 117 HOH HOH . 
F 6 HOH A 16 516 13 HOH HOH . 
F 6 HOH A 17 517 215 HOH HOH . 
F 6 HOH A 18 518 50 HOH HOH . 
F 6 HOH A 19 519 130 HOH HOH . 
F 6 HOH A 20 520 120 HOH HOH . 
F 6 HOH A 21 521 133 HOH HOH . 
F 6 HOH A 22 522 200 HOH HOH . 
F 6 HOH A 23 523 158 HOH HOH . 
F 6 HOH A 24 524 103 HOH HOH . 
F 6 HOH A 25 525 222 HOH HOH . 
F 6 HOH A 26 526 114 HOH HOH . 
F 6 HOH A 27 527 86 HOH HOH . 
F 6 HOH A 28 528 68 HOH HOH . 
F 6 HOH A 29 529 234 HOH HOH . 
F 6 HOH A 30 530 235 HOH HOH . 
F 6 HOH A 31 531 79 HOH HOH . 
F 6 HOH A 32 532 19 HOH HOH . 
F 6 HOH A 33 533 146 HOH HOH . 
F 6 HOH A 34 534 122 HOH HOH . 
F 6 HOH A 35 535 93 HOH HOH . 
F 6 HOH A 36 536 211 HOH HOH . 
F 6 HOH A 37 537 150 HOH HOH . 
F 6 HOH A 38 538 181 HOH HOH . 
F 6 HOH A 39 539 155 HOH HOH . 
F 6 HOH A 40 540 135 HOH HOH . 
F 6 HOH A 41 541 77 HOH HOH . 
F 6 HOH A 42 542 83 HOH HOH . 
F 6 HOH A 43 543 168 HOH HOH . 
F 6 HOH A 44 544 26 HOH HOH . 
F 6 HOH A 45 545 75 HOH HOH . 
F 6 HOH A 46 546 157 HOH HOH . 
F 6 HOH A 47 547 58 HOH HOH . 
F 6 HOH A 48 548 192 HOH HOH . 
F 6 HOH A 49 549 191 HOH HOH . 
F 6 HOH A 50 550 53 HOH HOH . 
F 6 HOH A 51 551 91 HOH HOH . 
F 6 HOH A 52 552 185 HOH HOH . 
F 6 HOH A 53 553 134 HOH HOH . 
F 6 HOH A 54 554 129 HOH HOH . 
F 6 HOH A 55 555 63 HOH HOH . 
F 6 HOH A 56 556 148 HOH HOH . 
F 6 HOH A 57 557 16 HOH HOH . 
F 6 HOH A 58 558 24 HOH HOH . 
F 6 HOH A 59 559 61 HOH HOH . 
F 6 HOH A 60 560 22 HOH HOH . 
F 6 HOH A 61 561 74 HOH HOH . 
F 6 HOH A 62 562 232 HOH HOH . 
F 6 HOH A 63 563 14 HOH HOH . 
F 6 HOH A 64 564 89 HOH HOH . 
F 6 HOH A 65 565 98 HOH HOH . 
F 6 HOH A 66 566 42 HOH HOH . 
F 6 HOH A 67 567 119 HOH HOH . 
F 6 HOH A 68 568 123 HOH HOH . 
F 6 HOH A 69 569 104 HOH HOH . 
F 6 HOH A 70 570 229 HOH HOH . 
F 6 HOH A 71 571 125 HOH HOH . 
F 6 HOH A 72 572 188 HOH HOH . 
F 6 HOH A 73 573 144 HOH HOH . 
F 6 HOH A 74 574 221 HOH HOH . 
F 6 HOH A 75 575 17 HOH HOH . 
F 6 HOH A 76 576 35 HOH HOH . 
F 6 HOH A 77 577 81 HOH HOH . 
F 6 HOH A 78 578 173 HOH HOH . 
F 6 HOH A 79 579 210 HOH HOH . 
F 6 HOH A 80 580 62 HOH HOH . 
F 6 HOH A 81 581 11 HOH HOH . 
F 6 HOH A 82 582 3 HOH HOH . 
F 6 HOH A 83 583 111 HOH HOH . 
F 6 HOH A 84 584 67 HOH HOH . 
F 6 HOH A 85 585 179 HOH HOH . 
F 6 HOH A 86 586 69 HOH HOH . 
F 6 HOH A 87 587 202 HOH HOH . 
F 6 HOH A 88 588 2 HOH HOH . 
F 6 HOH A 89 589 40 HOH HOH . 
F 6 HOH A 90 590 225 HOH HOH . 
F 6 HOH A 91 591 197 HOH HOH . 
F 6 HOH A 92 592 10 HOH HOH . 
F 6 HOH A 93 593 72 HOH HOH . 
F 6 HOH A 94 594 176 HOH HOH . 
F 6 HOH A 95 595 108 HOH HOH . 
F 6 HOH A 96 596 101 HOH HOH . 
F 6 HOH A 97 597 140 HOH HOH . 
F 6 HOH A 98 598 190 HOH HOH . 
F 6 HOH A 99 599 205 HOH HOH . 
F 6 HOH A 100 600 136 HOH HOH . 
F 6 HOH A 101 601 27 HOH HOH . 
F 6 HOH A 102 602 43 HOH HOH . 
F 6 HOH A 103 603 54 HOH HOH . 
F 6 HOH A 104 604 55 HOH HOH . 
F 6 HOH A 105 605 28 HOH HOH . 
F 6 HOH A 106 606 57 HOH HOH . 
F 6 HOH A 107 607 219 HOH HOH . 
F 6 HOH A 108 608 33 HOH HOH . 
F 6 HOH A 109 609 15 HOH HOH . 
F 6 HOH A 110 610 78 HOH HOH . 
F 6 HOH A 111 611 41 HOH HOH . 
F 6 HOH A 112 612 36 HOH HOH . 
F 6 HOH A 113 613 51 HOH HOH . 
F 6 HOH A 114 614 82 HOH HOH . 
F 6 HOH A 115 615 25 HOH HOH . 
F 6 HOH A 116 616 139 HOH HOH . 
F 6 HOH A 117 617 4 HOH HOH . 
F 6 HOH A 118 618 97 HOH HOH . 
F 6 HOH A 119 619 6 HOH HOH . 
F 6 HOH A 120 620 56 HOH HOH . 
F 6 HOH A 121 621 196 HOH HOH . 
F 6 HOH A 122 622 154 HOH HOH . 
F 6 HOH A 123 623 29 HOH HOH . 
F 6 HOH A 124 624 147 HOH HOH . 
F 6 HOH A 125 625 73 HOH HOH . 
F 6 HOH A 126 626 102 HOH HOH . 
F 6 HOH A 127 627 100 HOH HOH . 
F 6 HOH A 128 628 198 HOH HOH . 
F 6 HOH A 129 629 165 HOH HOH . 
F 6 HOH A 130 630 223 HOH HOH . 
F 6 HOH A 131 631 38 HOH HOH . 
F 6 HOH A 132 632 220 HOH HOH . 
F 6 HOH A 133 633 169 HOH HOH . 
F 6 HOH A 134 634 124 HOH HOH . 
F 6 HOH A 135 635 126 HOH HOH . 
F 6 HOH A 136 636 92 HOH HOH . 
F 6 HOH A 137 637 44 HOH HOH . 
F 6 HOH A 138 638 186 HOH HOH . 
F 6 HOH A 139 639 66 HOH HOH . 
F 6 HOH A 140 640 90 HOH HOH . 
F 6 HOH A 141 641 121 HOH HOH . 
F 6 HOH A 142 642 34 HOH HOH . 
F 6 HOH A 143 643 156 HOH HOH . 
F 6 HOH A 144 644 153 HOH HOH . 
F 6 HOH A 145 645 95 HOH HOH . 
F 6 HOH A 146 646 166 HOH HOH . 
F 6 HOH A 147 647 145 HOH HOH . 
F 6 HOH A 148 648 203 HOH HOH . 
F 6 HOH A 149 649 21 HOH HOH . 
F 6 HOH A 150 650 7 HOH HOH . 
F 6 HOH A 151 651 208 HOH HOH . 
F 6 HOH A 152 652 207 HOH HOH . 
F 6 HOH A 153 653 132 HOH HOH . 
F 6 HOH A 154 654 138 HOH HOH . 
F 6 HOH A 155 655 137 HOH HOH . 
F 6 HOH A 156 656 94 HOH HOH . 
F 6 HOH A 157 657 206 HOH HOH . 
F 6 HOH A 158 658 131 HOH HOH . 
F 6 HOH A 159 659 143 HOH HOH . 
F 6 HOH A 160 660 52 HOH HOH . 
F 6 HOH A 161 661 31 HOH HOH . 
F 6 HOH A 162 662 107 HOH HOH . 
F 6 HOH A 163 663 162 HOH HOH . 
F 6 HOH A 164 664 113 HOH HOH . 
F 6 HOH A 165 665 88 HOH HOH . 
F 6 HOH A 166 666 59 HOH HOH . 
F 6 HOH A 167 667 45 HOH HOH . 
F 6 HOH A 168 668 110 HOH HOH . 
F 6 HOH A 169 669 87 HOH HOH . 
F 6 HOH A 170 670 60 HOH HOH . 
F 6 HOH A 171 671 70 HOH HOH . 
F 6 HOH A 172 672 224 HOH HOH . 
F 6 HOH A 173 673 228 HOH HOH . 
F 6 HOH A 174 674 46 HOH HOH . 
F 6 HOH A 175 675 194 HOH HOH . 
F 6 HOH A 176 676 30 HOH HOH . 
F 6 HOH A 177 677 76 HOH HOH . 
F 6 HOH A 178 678 164 HOH HOH . 
F 6 HOH A 179 679 23 HOH HOH . 
F 6 HOH A 180 680 65 HOH HOH . 
F 6 HOH A 181 681 64 HOH HOH . 
F 6 HOH A 182 682 12 HOH HOH . 
F 6 HOH A 183 683 99 HOH HOH . 
F 6 HOH A 184 684 47 HOH HOH . 
F 6 HOH A 185 685 8 HOH HOH . 
F 6 HOH A 186 686 149 HOH HOH . 
F 6 HOH A 187 687 180 HOH HOH . 
F 6 HOH A 188 688 183 HOH HOH . 
F 6 HOH A 189 689 71 HOH HOH . 
F 6 HOH A 190 690 5 HOH HOH . 
F 6 HOH A 191 691 151 HOH HOH . 
F 6 HOH A 192 692 20 HOH HOH . 
F 6 HOH A 193 693 32 HOH HOH . 
F 6 HOH A 194 694 48 HOH HOH . 
F 6 HOH A 195 695 118 HOH HOH . 
F 6 HOH A 196 696 105 HOH HOH . 
F 6 HOH A 197 697 84 HOH HOH . 
F 6 HOH A 198 698 37 HOH HOH . 
F 6 HOH A 199 699 141 HOH HOH . 
F 6 HOH A 200 700 201 HOH HOH . 
F 6 HOH A 201 701 85 HOH HOH . 
F 6 HOH A 202 702 189 HOH HOH . 
F 6 HOH A 203 703 218 HOH HOH . 
F 6 HOH A 204 704 112 HOH HOH . 
F 6 HOH A 205 705 213 HOH HOH . 
F 6 HOH A 206 706 184 HOH HOH . 
F 6 HOH A 207 707 193 HOH HOH . 
F 6 HOH A 208 708 209 HOH HOH . 
F 6 HOH A 209 709 18 HOH HOH . 
F 6 HOH A 210 710 226 HOH HOH . 
F 6 HOH A 211 711 96 HOH HOH . 
F 6 HOH A 212 712 39 HOH HOH . 
F 6 HOH A 213 713 195 HOH HOH . 
F 6 HOH A 214 714 160 HOH HOH . 
F 6 HOH A 215 715 227 HOH HOH . 
F 6 HOH A 216 716 163 HOH HOH . 
F 6 HOH A 217 717 230 HOH HOH . 
F 6 HOH A 218 718 127 HOH HOH . 
F 6 HOH A 219 719 233 HOH HOH . 
F 6 HOH A 220 720 161 HOH HOH . 
F 6 HOH A 221 721 109 HOH HOH . 
F 6 HOH A 222 722 199 HOH HOH . 
F 6 HOH A 223 723 231 HOH HOH . 
F 6 HOH A 224 724 204 HOH HOH . 
F 6 HOH A 225 725 172 HOH HOH . 
F 6 HOH A 226 726 170 HOH HOH . 
F 6 HOH A 227 727 142 HOH HOH . 
F 6 HOH A 228 728 236 HOH HOH . 
F 6 HOH A 229 729 116 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O5' 5ID . . . B 2 13.186 8.078 10.114 1 18.36 ? O5' 5ID 401 A 1 
HETATM 2 C C5' 5ID . . . B 2 14.423 7.606 10.652 1 18.18 ? C5' 5ID 401 A 1 
HETATM 3 C C4' 5ID . . . B 2 14.667 7.991 12.092 1 18.26 ? C4' 5ID 401 A 1 
HETATM 4 O O4' 5ID . . . B 2 14.924 9.412 12.222 1 15.64 ? O4' 5ID 401 A 1 
HETATM 5 C C1' 5ID . . . B 2 14.308 9.908 13.397 1 15.86 ? C1' 5ID 401 A 1 
HETATM 6 N N9 5ID . . . B 2 13.249 10.835 13.01 1 14.96 ? N9 5ID 401 A 1 
HETATM 7 C C8 5ID . . . B 2 12.586 10.865 11.798 1 14.93 ? C8 5ID 401 A 1 
HETATM 8 C C7 5ID . . . B 2 11.679 11.883 11.806 1 15.29 ? C7 5ID 401 A 1 
HETATM 9 C C5 5ID . . . B 2 11.728 12.511 13.09 1 14.97 ? C5 5ID 401 A 1 
HETATM 10 C C6 5ID . . . B 2 11.068 13.561 13.778 1 14.73 ? C6 5ID 401 A 1 
HETATM 11 N N1 5ID . . . B 2 11.442 13.845 15.041 1 14.04 ? N1 5ID 401 A 1 
HETATM 12 C C2 5ID . . . B 2 12.409 13.117 15.596 1 14.8 ? C2 5ID 401 A 1 
HETATM 13 N N3 5ID . . . B 2 13.105 12.109 15.063 1 14.64 ? N3 5ID 401 A 1 
HETATM 14 C C4 5ID . . . B 2 12.739 11.832 13.804 1 13.97 ? C4 5ID 401 A 1 
HETATM 15 N N6 5ID . . . B 2 10.079 14.27 13.238 1 14.59 ? N6 5ID 401 A 1 
HETATM 16 C C2' 5ID . . . B 2 13.789 8.698 14.183 1 15.97 ? C2' 5ID 401 A 1 
HETATM 17 O O2' 5ID . . . B 2 14.816 8.281 15.103 1 17.26 ? O2' 5ID 401 A 1 
HETATM 18 C C3' 5ID . . . B 2 13.519 7.702 13.064 1 17.7 ? C3' 5ID 401 A 1 
HETATM 19 O O3' 5ID . . . B 2 13.537 6.334 13.484 1 18.16 ? O3' 5ID 401 A 1 
HETATM 20 I IAE 5ID . . . B 2 10.479 12.52 10.195 0.65 16.02 ? IAE 5ID 401 A 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           275 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           20 
#