data_6G38 # _model_server_result.job_id AFnQTLwYPORgni8I6feZvA _model_server_result.datetime_utc '2024-11-07 16:10:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6g38 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":801}' # _entry.id 6G38 # _exptl.entry_id 6G38 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6G38 _cell.length_a 78.56 _cell.length_b 78.76 _cell.length_c 80.02 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6G38 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 83 n n S C1 DMS sing 84 n n S C2 DMS sing 85 n n C1 H11 DMS sing 86 n n C1 H12 DMS sing 87 n n C1 H13 DMS sing 88 n n C2 H21 DMS sing 89 n n C2 H22 DMS sing 90 n n C2 H23 DMS sing 91 n n # _atom_sites.entry_id 6G38 _atom_sites.fract_transf_matrix[1][1] 0.012729 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012697 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012497 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 TBN A 1 800 1 TBN TUB . C 3 DMS A 1 801 1 DMS DMS . D 4 EPE A 1 802 1 EPE EPE . E 5 PO4 A 1 803 1 PO4 PO4 . F 6 HOH A 1 820 199 HOH HOH . F 6 HOH A 2 821 256 HOH HOH . F 6 HOH A 3 822 252 HOH HOH . F 6 HOH A 4 823 122 HOH HOH . F 6 HOH A 5 824 160 HOH HOH . F 6 HOH A 6 825 85 HOH HOH . F 6 HOH A 7 826 1 HOH HOH . F 6 HOH A 8 827 202 HOH HOH . F 6 HOH A 9 828 140 HOH HOH . F 6 HOH A 10 829 245 HOH HOH . F 6 HOH A 11 830 136 HOH HOH . F 6 HOH A 12 831 213 HOH HOH . F 6 HOH A 13 832 45 HOH HOH . F 6 HOH A 14 833 34 HOH HOH . F 6 HOH A 15 834 175 HOH HOH . F 6 HOH A 16 835 24 HOH HOH . F 6 HOH A 17 836 133 HOH HOH . F 6 HOH A 18 837 90 HOH HOH . F 6 HOH A 19 838 172 HOH HOH . F 6 HOH A 20 839 51 HOH HOH . F 6 HOH A 21 840 228 HOH HOH . F 6 HOH A 22 841 230 HOH HOH . F 6 HOH A 23 842 131 HOH HOH . F 6 HOH A 24 843 97 HOH HOH . F 6 HOH A 25 844 123 HOH HOH . F 6 HOH A 26 845 221 HOH HOH . F 6 HOH A 27 846 50 HOH HOH . F 6 HOH A 28 847 89 HOH HOH . F 6 HOH A 29 848 30 HOH HOH . F 6 HOH A 30 849 76 HOH HOH . F 6 HOH A 31 850 169 HOH HOH . F 6 HOH A 32 851 93 HOH HOH . F 6 HOH A 33 852 264 HOH HOH . F 6 HOH A 34 853 52 HOH HOH . F 6 HOH A 35 854 91 HOH HOH . F 6 HOH A 36 855 78 HOH HOH . F 6 HOH A 37 856 2 HOH HOH . F 6 HOH A 38 857 201 HOH HOH . F 6 HOH A 39 858 127 HOH HOH . F 6 HOH A 40 859 167 HOH HOH . F 6 HOH A 41 860 110 HOH HOH . F 6 HOH A 42 861 233 HOH HOH . F 6 HOH A 43 862 22 HOH HOH . F 6 HOH A 44 863 271 HOH HOH . F 6 HOH A 45 864 155 HOH HOH . F 6 HOH A 46 865 109 HOH HOH . F 6 HOH A 47 866 3 HOH HOH . F 6 HOH A 48 867 152 HOH HOH . F 6 HOH A 49 868 68 HOH HOH . F 6 HOH A 50 869 105 HOH HOH . F 6 HOH A 51 870 159 HOH HOH . F 6 HOH A 52 871 49 HOH HOH . F 6 HOH A 53 872 107 HOH HOH . F 6 HOH A 54 873 236 HOH HOH . F 6 HOH A 55 874 260 HOH HOH . F 6 HOH A 56 875 19 HOH HOH . F 6 HOH A 57 876 173 HOH HOH . F 6 HOH A 58 877 208 HOH HOH . F 6 HOH A 59 878 126 HOH HOH . F 6 HOH A 60 879 238 HOH HOH . F 6 HOH A 61 880 274 HOH HOH . F 6 HOH A 62 881 84 HOH HOH . F 6 HOH A 63 882 222 HOH HOH . F 6 HOH A 64 883 235 HOH HOH . F 6 HOH A 65 884 115 HOH HOH . F 6 HOH A 66 885 103 HOH HOH . F 6 HOH A 67 886 154 HOH HOH . F 6 HOH A 68 887 82 HOH HOH . F 6 HOH A 69 888 244 HOH HOH . F 6 HOH A 70 889 200 HOH HOH . F 6 HOH A 71 890 54 HOH HOH . F 6 HOH A 72 891 229 HOH HOH . F 6 HOH A 73 892 153 HOH HOH . F 6 HOH A 74 893 249 HOH HOH . F 6 HOH A 75 894 73 HOH HOH . F 6 HOH A 76 895 211 HOH HOH . F 6 HOH A 77 896 5 HOH HOH . F 6 HOH A 78 897 181 HOH HOH . F 6 HOH A 79 898 262 HOH HOH . F 6 HOH A 80 899 96 HOH HOH . F 6 HOH A 81 900 20 HOH HOH . F 6 HOH A 82 901 212 HOH HOH . F 6 HOH A 83 902 18 HOH HOH . F 6 HOH A 84 903 32 HOH HOH . F 6 HOH A 85 904 151 HOH HOH . F 6 HOH A 86 905 56 HOH HOH . F 6 HOH A 87 906 95 HOH HOH . F 6 HOH A 88 907 99 HOH HOH . F 6 HOH A 89 908 220 HOH HOH . F 6 HOH A 90 909 25 HOH HOH . F 6 HOH A 91 910 186 HOH HOH . F 6 HOH A 92 911 144 HOH HOH . F 6 HOH A 93 912 195 HOH HOH . F 6 HOH A 94 913 272 HOH HOH . F 6 HOH A 95 914 77 HOH HOH . F 6 HOH A 96 915 13 HOH HOH . F 6 HOH A 97 916 142 HOH HOH . F 6 HOH A 98 917 116 HOH HOH . F 6 HOH A 99 918 58 HOH HOH . F 6 HOH A 100 919 21 HOH HOH . F 6 HOH A 101 920 39 HOH HOH . F 6 HOH A 102 921 86 HOH HOH . F 6 HOH A 103 922 59 HOH HOH . F 6 HOH A 104 923 135 HOH HOH . F 6 HOH A 105 924 183 HOH HOH . F 6 HOH A 106 925 40 HOH HOH . F 6 HOH A 107 926 72 HOH HOH . F 6 HOH A 108 927 163 HOH HOH . F 6 HOH A 109 928 62 HOH HOH . F 6 HOH A 110 929 63 HOH HOH . F 6 HOH A 111 930 11 HOH HOH . F 6 HOH A 112 931 207 HOH HOH . F 6 HOH A 113 932 42 HOH HOH . F 6 HOH A 114 933 43 HOH HOH . F 6 HOH A 115 934 101 HOH HOH . F 6 HOH A 116 935 66 HOH HOH . F 6 HOH A 117 936 111 HOH HOH . F 6 HOH A 118 937 26 HOH HOH . F 6 HOH A 119 938 148 HOH HOH . F 6 HOH A 120 939 150 HOH HOH . F 6 HOH A 121 940 113 HOH HOH . F 6 HOH A 122 941 161 HOH HOH . F 6 HOH A 123 942 70 HOH HOH . F 6 HOH A 124 943 102 HOH HOH . F 6 HOH A 125 944 4 HOH HOH . F 6 HOH A 126 945 119 HOH HOH . F 6 HOH A 127 946 17 HOH HOH . F 6 HOH A 128 947 141 HOH HOH . F 6 HOH A 129 948 8 HOH HOH . F 6 HOH A 130 949 189 HOH HOH . F 6 HOH A 131 950 64 HOH HOH . F 6 HOH A 132 951 125 HOH HOH . F 6 HOH A 133 952 87 HOH HOH . F 6 HOH A 134 953 75 HOH HOH . F 6 HOH A 135 954 162 HOH HOH . F 6 HOH A 136 955 147 HOH HOH . F 6 HOH A 137 956 31 HOH HOH . F 6 HOH A 138 957 9 HOH HOH . F 6 HOH A 139 958 112 HOH HOH . F 6 HOH A 140 959 178 HOH HOH . F 6 HOH A 141 960 137 HOH HOH . F 6 HOH A 142 961 257 HOH HOH . F 6 HOH A 143 962 117 HOH HOH . F 6 HOH A 144 963 179 HOH HOH . F 6 HOH A 145 964 27 HOH HOH . F 6 HOH A 146 965 203 HOH HOH . F 6 HOH A 147 966 234 HOH HOH . F 6 HOH A 148 967 138 HOH HOH . F 6 HOH A 149 968 15 HOH HOH . F 6 HOH A 150 969 180 HOH HOH . F 6 HOH A 151 970 36 HOH HOH . F 6 HOH A 152 971 74 HOH HOH . F 6 HOH A 153 972 88 HOH HOH . F 6 HOH A 154 973 83 HOH HOH . F 6 HOH A 155 974 130 HOH HOH . F 6 HOH A 156 975 174 HOH HOH . F 6 HOH A 157 976 12 HOH HOH . F 6 HOH A 158 977 139 HOH HOH . F 6 HOH A 159 978 187 HOH HOH . F 6 HOH A 160 979 65 HOH HOH . F 6 HOH A 161 980 120 HOH HOH . F 6 HOH A 162 981 129 HOH HOH . F 6 HOH A 163 982 7 HOH HOH . F 6 HOH A 164 983 29 HOH HOH . F 6 HOH A 165 984 106 HOH HOH . F 6 HOH A 166 985 168 HOH HOH . F 6 HOH A 167 986 157 HOH HOH . F 6 HOH A 168 987 149 HOH HOH . F 6 HOH A 169 988 261 HOH HOH . F 6 HOH A 170 989 145 HOH HOH . F 6 HOH A 171 990 6 HOH HOH . F 6 HOH A 172 991 240 HOH HOH . F 6 HOH A 173 992 67 HOH HOH . F 6 HOH A 174 993 231 HOH HOH . F 6 HOH A 175 994 225 HOH HOH . F 6 HOH A 176 995 81 HOH HOH . F 6 HOH A 177 996 98 HOH HOH . F 6 HOH A 178 997 218 HOH HOH . F 6 HOH A 179 998 246 HOH HOH . F 6 HOH A 180 999 128 HOH HOH . F 6 HOH A 181 1000 146 HOH HOH . F 6 HOH A 182 1001 239 HOH HOH . F 6 HOH A 183 1002 171 HOH HOH . F 6 HOH A 184 1003 16 HOH HOH . F 6 HOH A 185 1004 33 HOH HOH . F 6 HOH A 186 1005 190 HOH HOH . F 6 HOH A 187 1006 48 HOH HOH . F 6 HOH A 188 1007 263 HOH HOH . F 6 HOH A 189 1008 158 HOH HOH . F 6 HOH A 190 1009 184 HOH HOH . F 6 HOH A 191 1010 60 HOH HOH . F 6 HOH A 192 1011 223 HOH HOH . F 6 HOH A 193 1012 185 HOH HOH . F 6 HOH A 194 1013 41 HOH HOH . F 6 HOH A 195 1014 38 HOH HOH . F 6 HOH A 196 1015 61 HOH HOH . F 6 HOH A 197 1016 215 HOH HOH . F 6 HOH A 198 1017 71 HOH HOH . F 6 HOH A 199 1018 114 HOH HOH . F 6 HOH A 200 1019 28 HOH HOH . F 6 HOH A 201 1020 55 HOH HOH . F 6 HOH A 202 1021 57 HOH HOH . F 6 HOH A 203 1022 92 HOH HOH . F 6 HOH A 204 1023 47 HOH HOH . F 6 HOH A 205 1024 143 HOH HOH . F 6 HOH A 206 1025 46 HOH HOH . F 6 HOH A 207 1026 69 HOH HOH . F 6 HOH A 208 1027 217 HOH HOH . F 6 HOH A 209 1028 80 HOH HOH . F 6 HOH A 210 1029 255 HOH HOH . F 6 HOH A 211 1030 134 HOH HOH . F 6 HOH A 212 1031 44 HOH HOH . F 6 HOH A 213 1032 94 HOH HOH . F 6 HOH A 214 1033 10 HOH HOH . F 6 HOH A 215 1034 100 HOH HOH . F 6 HOH A 216 1035 108 HOH HOH . F 6 HOH A 217 1036 53 HOH HOH . F 6 HOH A 218 1037 156 HOH HOH . F 6 HOH A 219 1038 209 HOH HOH . F 6 HOH A 220 1039 269 HOH HOH . F 6 HOH A 221 1040 118 HOH HOH . F 6 HOH A 222 1041 37 HOH HOH . F 6 HOH A 223 1042 196 HOH HOH . F 6 HOH A 224 1043 226 HOH HOH . F 6 HOH A 225 1044 250 HOH HOH . F 6 HOH A 226 1045 170 HOH HOH . F 6 HOH A 227 1046 253 HOH HOH . F 6 HOH A 228 1047 268 HOH HOH . F 6 HOH A 229 1048 35 HOH HOH . F 6 HOH A 230 1049 121 HOH HOH . F 6 HOH A 231 1050 210 HOH HOH . F 6 HOH A 232 1051 241 HOH HOH . F 6 HOH A 233 1052 124 HOH HOH . F 6 HOH A 234 1053 216 HOH HOH . F 6 HOH A 235 1054 204 HOH HOH . F 6 HOH A 236 1055 191 HOH HOH . F 6 HOH A 237 1056 79 HOH HOH . F 6 HOH A 238 1057 247 HOH HOH . F 6 HOH A 239 1058 182 HOH HOH . F 6 HOH A 240 1059 224 HOH HOH . F 6 HOH A 241 1060 265 HOH HOH . F 6 HOH A 242 1061 232 HOH HOH . F 6 HOH A 243 1062 259 HOH HOH . F 6 HOH A 244 1063 14 HOH HOH . F 6 HOH A 245 1064 248 HOH HOH . F 6 HOH A 246 1065 219 HOH HOH . F 6 HOH A 247 1066 23 HOH HOH . F 6 HOH A 248 1067 198 HOH HOH . F 6 HOH A 249 1068 214 HOH HOH . F 6 HOH A 250 1069 275 HOH HOH . F 6 HOH A 251 1070 188 HOH HOH . F 6 HOH A 252 1071 267 HOH HOH . F 6 HOH A 253 1072 165 HOH HOH . F 6 HOH A 254 1073 132 HOH HOH . F 6 HOH A 255 1074 176 HOH HOH . F 6 HOH A 256 1075 266 HOH HOH . F 6 HOH A 257 1076 227 HOH HOH . F 6 HOH A 258 1077 104 HOH HOH . F 6 HOH A 259 1078 242 HOH HOH . F 6 HOH A 260 1079 243 HOH HOH . F 6 HOH A 261 1080 237 HOH HOH . F 6 HOH A 262 1081 194 HOH HOH . F 6 HOH A 263 1082 192 HOH HOH . F 6 HOH A 264 1083 166 HOH HOH . F 6 HOH A 265 1084 270 HOH HOH . F 6 HOH A 266 1085 254 HOH HOH . F 6 HOH A 267 1086 164 HOH HOH . F 6 HOH A 268 1087 273 HOH HOH . F 6 HOH A 269 1088 197 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . C 3 51.639 73.39 -1.206 1 58.65 ? S DMS 801 A 1 HETATM 2 O O DMS . . . C 3 50.261 73.232 -1.805 1 51.69 ? O DMS 801 A 1 HETATM 3 C C1 DMS . . . C 3 52.897 72.985 -2.304 1 56.43 ? C1 DMS 801 A 1 HETATM 4 C C2 DMS . . . C 3 51.956 75.058 -1.007 1 53.62 ? C2 DMS 801 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 4 #