data_6G3H # _model_server_result.job_id jH2JPORwsgXRv8ezxhHEHQ _model_server_result.datetime_utc '2024-11-24 01:35:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6g3h # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":601}' # _entry.id 6G3H # _exptl.entry_id 6G3H _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 292.243 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2~{S})-2-[2-[[(2~{S})-1,4-bis(oxidanyl)-1,4-bis(oxidanylidene)butan-2-yl]amino]ethylamino]butanedioic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6G3H _cell.length_a 144.593 _cell.length_b 146.409 _cell.length_c 147.021 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6G3H _symmetry.cell_setting ? _symmetry.Int_Tables_number 22 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'F 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 4 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H16 N2 O8' _chem_comp.formula_weight 292.243 _chem_comp.id EKQ _chem_comp.mon_nstd_flag . _chem_comp.name '(2~{S})-2-[2-[[(2~{S})-1,4-bis(oxidanyl)-1,4-bis(oxidanylidene)butan-2-yl]amino]ethylamino]butanedioic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O14 C12 EKQ doub 83 n n C12 C11 EKQ sing 84 n n C12 O13 EKQ sing 85 n n C11 C10 EKQ sing 86 n n O17 C15 EKQ doub 87 n n C10 C15 EKQ sing 88 n n C10 N09 EKQ sing 89 n n C15 O16 EKQ sing 90 n n N09 C08 EKQ sing 91 n n O19 C18 EKQ doub 92 n n C08 C07 EKQ sing 93 n n C18 O20 EKQ sing 94 n n C18 C05 EKQ sing 95 n n C07 N06 EKQ sing 96 n n N06 C05 EKQ sing 97 n n C05 C04 EKQ sing 98 n n C04 C02 EKQ sing 99 n n C02 O03 EKQ doub 100 n n C02 O01 EKQ sing 101 n n C10 H1 EKQ sing 102 n n O01 H2 EKQ sing 103 n n C04 H3 EKQ sing 104 n n C04 H4 EKQ sing 105 n n C05 H5 EKQ sing 106 n n N06 H6 EKQ sing 107 n n C07 H8 EKQ sing 108 n n C07 H9 EKQ sing 109 n n C08 H10 EKQ sing 110 n n C08 H11 EKQ sing 111 n n N09 H12 EKQ sing 112 n n C11 H14 EKQ sing 113 n n C11 H15 EKQ sing 114 n n O13 H16 EKQ sing 115 n n O16 H17 EKQ sing 116 n n O20 H18 EKQ sing 117 n n # _atom_sites.entry_id 6G3H _atom_sites.fract_transf_matrix[1][1] 0.006916 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00683 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006802 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EKQ A 1 601 1 EKQ LIG . C 3 HOH A 1 701 11 HOH HOH . C 3 HOH A 2 702 125 HOH HOH . C 3 HOH A 3 703 150 HOH HOH . C 3 HOH A 4 704 104 HOH HOH . C 3 HOH A 5 705 200 HOH HOH . C 3 HOH A 6 706 29 HOH HOH . C 3 HOH A 7 707 110 HOH HOH . C 3 HOH A 8 708 201 HOH HOH . C 3 HOH A 9 709 92 HOH HOH . C 3 HOH A 10 710 147 HOH HOH . C 3 HOH A 11 711 18 HOH HOH . C 3 HOH A 12 712 23 HOH HOH . C 3 HOH A 13 713 197 HOH HOH . C 3 HOH A 14 714 101 HOH HOH . C 3 HOH A 15 715 86 HOH HOH . C 3 HOH A 16 716 60 HOH HOH . C 3 HOH A 17 717 117 HOH HOH . C 3 HOH A 18 718 1 HOH HOH . C 3 HOH A 19 719 14 HOH HOH . C 3 HOH A 20 720 212 HOH HOH . C 3 HOH A 21 721 153 HOH HOH . C 3 HOH A 22 722 22 HOH HOH . C 3 HOH A 23 723 182 HOH HOH . C 3 HOH A 24 724 162 HOH HOH . C 3 HOH A 25 725 27 HOH HOH . C 3 HOH A 26 726 186 HOH HOH . C 3 HOH A 27 727 91 HOH HOH . C 3 HOH A 28 728 138 HOH HOH . C 3 HOH A 29 729 56 HOH HOH . C 3 HOH A 30 730 46 HOH HOH . C 3 HOH A 31 731 83 HOH HOH . C 3 HOH A 32 732 64 HOH HOH . C 3 HOH A 33 733 5 HOH HOH . C 3 HOH A 34 734 121 HOH HOH . C 3 HOH A 35 735 44 HOH HOH . C 3 HOH A 36 736 43 HOH HOH . C 3 HOH A 37 737 41 HOH HOH . C 3 HOH A 38 738 40 HOH HOH . C 3 HOH A 39 739 87 HOH HOH . C 3 HOH A 40 740 15 HOH HOH . C 3 HOH A 41 741 25 HOH HOH . C 3 HOH A 42 742 77 HOH HOH . C 3 HOH A 43 743 213 HOH HOH . C 3 HOH A 44 744 16 HOH HOH . C 3 HOH A 45 745 35 HOH HOH . C 3 HOH A 46 746 39 HOH HOH . C 3 HOH A 47 747 94 HOH HOH . C 3 HOH A 48 748 179 HOH HOH . C 3 HOH A 49 749 55 HOH HOH . C 3 HOH A 50 750 135 HOH HOH . C 3 HOH A 51 751 7 HOH HOH . C 3 HOH A 52 752 172 HOH HOH . C 3 HOH A 53 753 106 HOH HOH . C 3 HOH A 54 754 157 HOH HOH . C 3 HOH A 55 755 184 HOH HOH . C 3 HOH A 56 756 79 HOH HOH . C 3 HOH A 57 757 181 HOH HOH . C 3 HOH A 58 758 42 HOH HOH . C 3 HOH A 59 759 161 HOH HOH . C 3 HOH A 60 760 45 HOH HOH . C 3 HOH A 61 761 50 HOH HOH . C 3 HOH A 62 762 3 HOH HOH . C 3 HOH A 63 763 19 HOH HOH . C 3 HOH A 64 764 9 HOH HOH . C 3 HOH A 65 765 159 HOH HOH . C 3 HOH A 66 766 20 HOH HOH . C 3 HOH A 67 767 97 HOH HOH . C 3 HOH A 68 768 163 HOH HOH . C 3 HOH A 69 769 151 HOH HOH . C 3 HOH A 70 770 36 HOH HOH . C 3 HOH A 71 771 205 HOH HOH . C 3 HOH A 72 772 69 HOH HOH . C 3 HOH A 73 773 149 HOH HOH . C 3 HOH A 74 774 107 HOH HOH . C 3 HOH A 75 775 21 HOH HOH . C 3 HOH A 76 776 8 HOH HOH . C 3 HOH A 77 777 13 HOH HOH . C 3 HOH A 78 778 204 HOH HOH . C 3 HOH A 79 779 131 HOH HOH . C 3 HOH A 80 780 51 HOH HOH . C 3 HOH A 81 781 2 HOH HOH . C 3 HOH A 82 782 58 HOH HOH . C 3 HOH A 83 783 132 HOH HOH . C 3 HOH A 84 784 70 HOH HOH . C 3 HOH A 85 785 61 HOH HOH . C 3 HOH A 86 786 66 HOH HOH . C 3 HOH A 87 787 32 HOH HOH . C 3 HOH A 88 788 109 HOH HOH . C 3 HOH A 89 789 33 HOH HOH . C 3 HOH A 90 790 128 HOH HOH . C 3 HOH A 91 791 102 HOH HOH . C 3 HOH A 92 792 176 HOH HOH . C 3 HOH A 93 793 191 HOH HOH . C 3 HOH A 94 794 65 HOH HOH . C 3 HOH A 95 795 10 HOH HOH . C 3 HOH A 96 796 126 HOH HOH . C 3 HOH A 97 797 48 HOH HOH . C 3 HOH A 98 798 34 HOH HOH . C 3 HOH A 99 799 146 HOH HOH . C 3 HOH A 100 800 188 HOH HOH . C 3 HOH A 101 801 71 HOH HOH . C 3 HOH A 102 802 99 HOH HOH . C 3 HOH A 103 803 108 HOH HOH . C 3 HOH A 104 804 123 HOH HOH . C 3 HOH A 105 805 73 HOH HOH . C 3 HOH A 106 806 49 HOH HOH . C 3 HOH A 107 807 6 HOH HOH . C 3 HOH A 108 808 136 HOH HOH . C 3 HOH A 109 809 95 HOH HOH . C 3 HOH A 110 810 209 HOH HOH . C 3 HOH A 111 811 57 HOH HOH . C 3 HOH A 112 812 139 HOH HOH . C 3 HOH A 113 813 170 HOH HOH . C 3 HOH A 114 814 141 HOH HOH . C 3 HOH A 115 815 47 HOH HOH . C 3 HOH A 116 816 31 HOH HOH . C 3 HOH A 117 817 28 HOH HOH . C 3 HOH A 118 818 113 HOH HOH . C 3 HOH A 119 819 74 HOH HOH . C 3 HOH A 120 820 115 HOH HOH . C 3 HOH A 121 821 63 HOH HOH . C 3 HOH A 122 822 145 HOH HOH . C 3 HOH A 123 823 152 HOH HOH . C 3 HOH A 124 824 52 HOH HOH . C 3 HOH A 125 825 72 HOH HOH . C 3 HOH A 126 826 120 HOH HOH . C 3 HOH A 127 827 62 HOH HOH . C 3 HOH A 128 828 96 HOH HOH . C 3 HOH A 129 829 178 HOH HOH . C 3 HOH A 130 830 198 HOH HOH . C 3 HOH A 131 831 17 HOH HOH . C 3 HOH A 132 832 196 HOH HOH . C 3 HOH A 133 833 88 HOH HOH . C 3 HOH A 134 834 175 HOH HOH . C 3 HOH A 135 835 134 HOH HOH . C 3 HOH A 136 836 130 HOH HOH . C 3 HOH A 137 837 85 HOH HOH . C 3 HOH A 138 838 30 HOH HOH . C 3 HOH A 139 839 165 HOH HOH . C 3 HOH A 140 840 195 HOH HOH . C 3 HOH A 141 841 54 HOH HOH . C 3 HOH A 142 842 171 HOH HOH . C 3 HOH A 143 843 119 HOH HOH . C 3 HOH A 144 844 124 HOH HOH . C 3 HOH A 145 845 143 HOH HOH . C 3 HOH A 146 846 129 HOH HOH . C 3 HOH A 147 847 38 HOH HOH . C 3 HOH A 148 848 180 HOH HOH . C 3 HOH A 149 849 84 HOH HOH . C 3 HOH A 150 850 68 HOH HOH . C 3 HOH A 151 851 118 HOH HOH . C 3 HOH A 152 852 168 HOH HOH . C 3 HOH A 153 853 167 HOH HOH . C 3 HOH A 154 854 202 HOH HOH . C 3 HOH A 155 855 93 HOH HOH . C 3 HOH A 156 856 89 HOH HOH . C 3 HOH A 157 857 80 HOH HOH . C 3 HOH A 158 858 155 HOH HOH . C 3 HOH A 159 859 82 HOH HOH . C 3 HOH A 160 860 158 HOH HOH . C 3 HOH A 161 861 127 HOH HOH . C 3 HOH A 162 862 76 HOH HOH . C 3 HOH A 163 863 111 HOH HOH . C 3 HOH A 164 864 100 HOH HOH . C 3 HOH A 165 865 24 HOH HOH . C 3 HOH A 166 866 98 HOH HOH . C 3 HOH A 167 867 187 HOH HOH . C 3 HOH A 168 868 75 HOH HOH . C 3 HOH A 169 869 12 HOH HOH . C 3 HOH A 170 870 78 HOH HOH . C 3 HOH A 171 871 160 HOH HOH . C 3 HOH A 172 872 26 HOH HOH . C 3 HOH A 173 873 37 HOH HOH . C 3 HOH A 174 874 206 HOH HOH . C 3 HOH A 175 875 169 HOH HOH . C 3 HOH A 176 876 144 HOH HOH . C 3 HOH A 177 877 140 HOH HOH . C 3 HOH A 178 878 189 HOH HOH . C 3 HOH A 179 879 194 HOH HOH . C 3 HOH A 180 880 203 HOH HOH . C 3 HOH A 181 881 105 HOH HOH . C 3 HOH A 182 882 173 HOH HOH . C 3 HOH A 183 883 53 HOH HOH . C 3 HOH A 184 884 177 HOH HOH . C 3 HOH A 185 885 192 HOH HOH . C 3 HOH A 186 886 114 HOH HOH . C 3 HOH A 187 887 207 HOH HOH . C 3 HOH A 188 888 193 HOH HOH . C 3 HOH A 189 889 211 HOH HOH . C 3 HOH A 190 890 199 HOH HOH . C 3 HOH A 191 891 214 HOH HOH . C 3 HOH A 192 892 148 HOH HOH . C 3 HOH A 193 893 137 HOH HOH . C 3 HOH A 194 894 190 HOH HOH . C 3 HOH A 195 895 90 HOH HOH . C 3 HOH A 196 896 185 HOH HOH . C 3 HOH A 197 897 81 HOH HOH . C 3 HOH A 198 898 174 HOH HOH . C 3 HOH A 199 899 208 HOH HOH . C 3 HOH A 200 900 133 HOH HOH . C 3 HOH A 201 901 103 HOH HOH . C 3 HOH A 202 902 142 HOH HOH . C 3 HOH A 203 903 154 HOH HOH . C 3 HOH A 204 904 59 HOH HOH . C 3 HOH A 205 905 183 HOH HOH . C 3 HOH A 206 906 210 HOH HOH . C 3 HOH A 207 907 112 HOH HOH . C 3 HOH A 208 908 156 HOH HOH . C 3 HOH A 209 909 164 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 EKQ . . . B 2 -15.887 -24.121 -8.582 1 35.41 ? C10 EKQ 601 A 1 HETATM 2 C C15 EKQ . . . B 2 -14.496 -24.721 -8.336 1 36.62 ? C15 EKQ 601 A 1 HETATM 3 O O01 EKQ . . . B 2 -16.984 -17.48 -2.612 1 38.3 -1 O01 EKQ 601 A 1 HETATM 4 C C02 EKQ . . . B 2 -17.589 -18.53 -3.124 1 43.1 ? C02 EKQ 601 A 1 HETATM 5 O O03 EKQ . . . B 2 -18.68 -18.882 -2.79 1 36.02 ? O03 EKQ 601 A 1 HETATM 6 C C04 EKQ . . . B 2 -16.782 -19.246 -4.169 1 31.96 ? C04 EKQ 601 A 1 HETATM 7 C C05 EKQ . . . B 2 -17.68 -19.96 -5.167 1 36.52 ? C05 EKQ 601 A 1 HETATM 8 N N06 EKQ . . . B 2 -17.036 -21.218 -5.682 1 34.52 ? N06 EKQ 601 A 1 HETATM 9 C C07 EKQ . . . B 2 -15.613 -21.143 -6.119 1 33.75 ? C07 EKQ 601 A 1 HETATM 10 C C08 EKQ . . . B 2 -15.137 -22.364 -6.868 1 34 ? C08 EKQ 601 A 1 HETATM 11 N N09 EKQ . . . B 2 -15.906 -22.696 -8.104 1 33.07 ? N09 EKQ 601 A 1 HETATM 12 C C11 EKQ . . . B 2 -16.34 -24.184 -10.034 1 34.81 ? C11 EKQ 601 A 1 HETATM 13 C C12 EKQ . . . B 2 -17.827 -24.043 -10.158 1 39.03 ? C12 EKQ 601 A 1 HETATM 14 O O13 EKQ . . . B 2 -18.542 -23.888 -9.219 1 38.78 -1 O13 EKQ 601 A 1 HETATM 15 O O14 EKQ . . . B 2 -18.264 -24.095 -11.397 1 38.78 ? O14 EKQ 601 A 1 HETATM 16 O O16 EKQ . . . B 2 -14.462 -25.688 -7.539 1 36.28 -1 O16 EKQ 601 A 1 HETATM 17 O O17 EKQ . . . B 2 -13.519 -24.231 -8.924 1 34.13 ? O17 EKQ 601 A 1 HETATM 18 C C18 EKQ . . . B 2 -18.065 -19.075 -6.356 1 39.69 ? C18 EKQ 601 A 1 HETATM 19 O O19 EKQ . . . B 2 -18.097 -19.641 -7.477 1 39.27 -1 O19 EKQ 601 A 1 HETATM 20 O O20 EKQ . . . B 2 -18.308 -17.88 -6.137 1 39.08 ? O20 EKQ 601 A 1 # _model_server_stats.io_time_ms 48 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 337 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 20 #