data_6G3U # _model_server_result.job_id HYyaT3q3OW4jSoV6f9zgig _model_server_result.datetime_utc '2024-10-28 02:22:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6g3u # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":802}' # _entry.id 6G3U # _exptl.entry_id 6G3U _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 146.098 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-OXOGLUTARIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6G3U _cell.length_a 126.46 _cell.length_b 149.02 _cell.length_c 201.137 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6G3U _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E 1 1 B,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C5 H6 O5' _chem_comp.formula_weight 146.098 _chem_comp.id AKG _chem_comp.mon_nstd_flag . _chem_comp.name '2-OXOGLUTARIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 AKG doub 1 n n C1 O2 AKG sing 2 n n C1 C2 AKG sing 3 n n O2 HO2 AKG sing 4 n n C2 O5 AKG doub 5 n n C2 C3 AKG sing 6 n n C3 C4 AKG sing 7 n n C3 H31 AKG sing 8 n n C3 H32 AKG sing 9 n n C4 C5 AKG sing 10 n n C4 H41 AKG sing 11 n n C4 H42 AKG sing 12 n n C5 O3 AKG doub 13 n n C5 O4 AKG sing 14 n n O4 HO4 AKG sing 15 n n # _atom_sites.entry_id 6G3U _atom_sites.fract_transf_matrix[1][1] 0.007908 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006711 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004972 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAP A 1 801 1 NAP NAP . D 3 AKG A 1 802 2 AKG AKG . E 4 HOH A 1 901 174 HOH HOH . E 4 HOH A 2 902 77 HOH HOH . E 4 HOH A 3 903 155 HOH HOH . E 4 HOH A 4 904 145 HOH HOH . E 4 HOH A 5 905 19 HOH HOH . E 4 HOH A 6 906 22 HOH HOH . E 4 HOH A 7 907 75 HOH HOH . E 4 HOH A 8 908 189 HOH HOH . E 4 HOH A 9 909 141 HOH HOH . E 4 HOH A 10 910 63 HOH HOH . E 4 HOH A 11 911 157 HOH HOH . E 4 HOH A 12 912 3 HOH HOH . E 4 HOH A 13 913 109 HOH HOH . E 4 HOH A 14 914 27 HOH HOH . E 4 HOH A 15 915 228 HOH HOH . E 4 HOH A 16 916 58 HOH HOH . E 4 HOH A 17 917 235 HOH HOH . E 4 HOH A 18 918 213 HOH HOH . E 4 HOH A 19 919 182 HOH HOH . E 4 HOH A 20 920 200 HOH HOH . E 4 HOH A 21 921 41 HOH HOH . E 4 HOH A 22 922 83 HOH HOH . E 4 HOH A 23 923 14 HOH HOH . E 4 HOH A 24 924 122 HOH HOH . E 4 HOH A 25 925 66 HOH HOH . E 4 HOH A 26 926 156 HOH HOH . E 4 HOH A 27 927 6 HOH HOH . E 4 HOH A 28 928 62 HOH HOH . E 4 HOH A 29 929 229 HOH HOH . E 4 HOH A 30 930 154 HOH HOH . E 4 HOH A 31 931 158 HOH HOH . E 4 HOH A 32 932 106 HOH HOH . E 4 HOH A 33 933 2 HOH HOH . E 4 HOH A 34 934 230 HOH HOH . E 4 HOH A 35 935 8 HOH HOH . E 4 HOH A 36 936 151 HOH HOH . E 4 HOH A 37 937 119 HOH HOH . E 4 HOH A 38 938 69 HOH HOH . E 4 HOH A 39 939 128 HOH HOH . E 4 HOH A 40 940 150 HOH HOH . E 4 HOH A 41 941 136 HOH HOH . E 4 HOH A 42 942 26 HOH HOH . E 4 HOH A 43 943 16 HOH HOH . E 4 HOH A 44 944 165 HOH HOH . E 4 HOH A 45 945 233 HOH HOH . E 4 HOH A 46 946 7 HOH HOH . E 4 HOH A 47 947 236 HOH HOH . E 4 HOH A 48 948 78 HOH HOH . E 4 HOH A 49 949 112 HOH HOH . E 4 HOH A 50 950 215 HOH HOH . E 4 HOH A 51 951 161 HOH HOH . E 4 HOH A 52 952 1 HOH HOH . E 4 HOH A 53 953 90 HOH HOH . E 4 HOH A 54 954 115 HOH HOH . E 4 HOH A 55 955 52 HOH HOH . E 4 HOH A 56 956 191 HOH HOH . E 4 HOH A 57 957 110 HOH HOH . E 4 HOH A 58 958 68 HOH HOH . E 4 HOH A 59 959 65 HOH HOH . E 4 HOH A 60 960 18 HOH HOH . E 4 HOH A 61 961 4 HOH HOH . E 4 HOH A 62 962 238 HOH HOH . E 4 HOH A 63 963 130 HOH HOH . E 4 HOH A 64 964 85 HOH HOH . E 4 HOH A 65 965 100 HOH HOH . E 4 HOH A 66 966 15 HOH HOH . E 4 HOH A 67 967 144 HOH HOH . E 4 HOH A 68 968 79 HOH HOH . E 4 HOH A 69 969 60 HOH HOH . E 4 HOH A 70 970 64 HOH HOH . E 4 HOH A 71 971 139 HOH HOH . E 4 HOH A 72 972 114 HOH HOH . E 4 HOH A 73 973 93 HOH HOH . E 4 HOH A 74 974 70 HOH HOH . E 4 HOH A 75 975 86 HOH HOH . E 4 HOH A 76 976 181 HOH HOH . E 4 HOH A 77 977 96 HOH HOH . E 4 HOH A 78 978 25 HOH HOH . E 4 HOH A 79 979 29 HOH HOH . E 4 HOH A 80 980 214 HOH HOH . E 4 HOH A 81 981 132 HOH HOH . E 4 HOH A 82 982 118 HOH HOH . E 4 HOH A 83 983 98 HOH HOH . E 4 HOH A 84 984 116 HOH HOH . E 4 HOH A 85 985 51 HOH HOH . E 4 HOH A 86 986 123 HOH HOH . E 4 HOH A 87 987 17 HOH HOH . E 4 HOH A 88 988 28 HOH HOH . E 4 HOH A 89 989 61 HOH HOH . E 4 HOH A 90 990 197 HOH HOH . E 4 HOH A 91 991 97 HOH HOH . E 4 HOH A 92 992 171 HOH HOH . E 4 HOH A 93 993 102 HOH HOH . E 4 HOH A 94 994 137 HOH HOH . E 4 HOH A 95 995 5 HOH HOH . E 4 HOH A 96 996 121 HOH HOH . E 4 HOH A 97 997 59 HOH HOH . E 4 HOH A 98 998 177 HOH HOH . E 4 HOH A 99 999 23 HOH HOH . E 4 HOH A 100 1000 148 HOH HOH . E 4 HOH A 101 1001 140 HOH HOH . E 4 HOH A 102 1002 164 HOH HOH . E 4 HOH A 103 1003 55 HOH HOH . E 4 HOH A 104 1004 146 HOH HOH . E 4 HOH A 105 1005 129 HOH HOH . E 4 HOH A 106 1006 39 HOH HOH . E 4 HOH A 107 1007 24 HOH HOH . E 4 HOH A 108 1008 82 HOH HOH . E 4 HOH A 109 1009 227 HOH HOH . E 4 HOH A 110 1010 224 HOH HOH . E 4 HOH A 111 1011 9 HOH HOH . E 4 HOH A 112 1012 57 HOH HOH . E 4 HOH A 113 1013 40 HOH HOH . E 4 HOH A 114 1014 131 HOH HOH . E 4 HOH A 115 1015 50 HOH HOH . E 4 HOH A 116 1016 223 HOH HOH . E 4 HOH A 117 1017 91 HOH HOH . E 4 HOH A 118 1018 111 HOH HOH . E 4 HOH A 119 1019 198 HOH HOH . F 4 HOH B 1 801 42 HOH HOH . F 4 HOH B 2 802 231 HOH HOH . F 4 HOH B 3 803 46 HOH HOH . F 4 HOH B 4 804 173 HOH HOH . F 4 HOH B 5 805 34 HOH HOH . F 4 HOH B 6 806 81 HOH HOH . F 4 HOH B 7 807 56 HOH HOH . F 4 HOH B 8 808 133 HOH HOH . F 4 HOH B 9 809 169 HOH HOH . F 4 HOH B 10 810 43 HOH HOH . F 4 HOH B 11 811 117 HOH HOH . F 4 HOH B 12 812 38 HOH HOH . F 4 HOH B 13 813 218 HOH HOH . F 4 HOH B 14 814 30 HOH HOH . F 4 HOH B 15 815 35 HOH HOH . F 4 HOH B 16 816 71 HOH HOH . F 4 HOH B 17 817 49 HOH HOH . F 4 HOH B 18 818 138 HOH HOH . F 4 HOH B 19 819 195 HOH HOH . F 4 HOH B 20 820 186 HOH HOH . F 4 HOH B 21 821 149 HOH HOH . F 4 HOH B 22 822 193 HOH HOH . F 4 HOH B 23 823 31 HOH HOH . F 4 HOH B 24 824 76 HOH HOH . F 4 HOH B 25 825 127 HOH HOH . F 4 HOH B 26 826 113 HOH HOH . F 4 HOH B 27 827 104 HOH HOH . F 4 HOH B 28 828 147 HOH HOH . F 4 HOH B 29 829 124 HOH HOH . F 4 HOH B 30 830 232 HOH HOH . F 4 HOH B 31 831 105 HOH HOH . F 4 HOH B 32 832 67 HOH HOH . F 4 HOH B 33 833 74 HOH HOH . F 4 HOH B 34 834 72 HOH HOH . F 4 HOH B 35 835 216 HOH HOH . F 4 HOH B 36 836 210 HOH HOH . F 4 HOH B 37 837 166 HOH HOH . F 4 HOH B 38 838 170 HOH HOH . F 4 HOH B 39 839 53 HOH HOH . F 4 HOH B 40 840 47 HOH HOH . F 4 HOH B 41 841 54 HOH HOH . F 4 HOH B 42 842 160 HOH HOH . F 4 HOH B 43 843 162 HOH HOH . F 4 HOH B 44 844 13 HOH HOH . F 4 HOH B 45 845 48 HOH HOH . F 4 HOH B 46 846 234 HOH HOH . F 4 HOH B 47 847 194 HOH HOH . F 4 HOH B 48 848 217 HOH HOH . F 4 HOH B 49 849 107 HOH HOH . F 4 HOH B 50 850 180 HOH HOH . F 4 HOH B 51 851 11 HOH HOH . F 4 HOH B 52 852 84 HOH HOH . F 4 HOH B 53 853 103 HOH HOH . F 4 HOH B 54 854 201 HOH HOH . F 4 HOH B 55 855 152 HOH HOH . F 4 HOH B 56 856 184 HOH HOH . F 4 HOH B 57 857 108 HOH HOH . F 4 HOH B 58 858 12 HOH HOH . F 4 HOH B 59 859 99 HOH HOH . F 4 HOH B 60 860 143 HOH HOH . F 4 HOH B 61 861 44 HOH HOH . F 4 HOH B 62 862 125 HOH HOH . F 4 HOH B 63 863 142 HOH HOH . F 4 HOH B 64 864 95 HOH HOH . F 4 HOH B 65 865 202 HOH HOH . F 4 HOH B 66 866 33 HOH HOH . F 4 HOH B 67 867 153 HOH HOH . F 4 HOH B 68 868 126 HOH HOH . F 4 HOH B 69 869 163 HOH HOH . F 4 HOH B 70 870 45 HOH HOH . F 4 HOH B 71 871 87 HOH HOH . F 4 HOH B 72 872 135 HOH HOH . F 4 HOH B 73 873 134 HOH HOH . F 4 HOH B 74 874 120 HOH HOH . F 4 HOH B 75 875 89 HOH HOH . F 4 HOH B 76 876 222 HOH HOH . F 4 HOH B 77 877 187 HOH HOH . F 4 HOH B 78 878 226 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 AKG . . . D 3 8.799 42.312 -2.82 1 30.86 ? C1 AKG 802 A 1 HETATM 2 O O1 AKG . . . D 3 7.88 42.001 -3.612 1 33.74 ? O1 AKG 802 A 1 HETATM 3 O O2 AKG . . . D 3 9.917 41.763 -2.818 1 36 ? O2 AKG 802 A 1 HETATM 4 C C2 AKG . . . D 3 8.601 43.355 -1.767 1 41.26 ? C2 AKG 802 A 1 HETATM 5 O O5 AKG . . . D 3 8.223 42.994 -0.707 1 44.18 ? O5 AKG 802 A 1 HETATM 6 C C3 AKG . . . D 3 8.932 44.822 -2.019 1 32.95 ? C3 AKG 802 A 1 HETATM 7 C C4 AKG . . . D 3 9.229 45.381 -0.635 1 25.21 ? C4 AKG 802 A 1 HETATM 8 C C5 AKG . . . D 3 8.936 46.819 -0.835 1 29 ? C5 AKG 802 A 1 HETATM 9 O O3 AKG . . . D 3 8.028 47.109 -1.646 1 37 ? O3 AKG 802 A 1 HETATM 10 O O4 AKG . . . D 3 9.59 47.699 -0.223 1 35.08 ? O4 AKG 802 A 1 # _model_server_stats.io_time_ms 63 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 283 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 10 #