data_6G3W
#
_model_server_result.job_id            eHxmYsHB3NdbV4mdNmAoCQ 
_model_server_result.datetime_utc      '2024-10-19 04:49:58' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6g3w 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":302}' 
#
_entry.id    6G3W 
#
_exptl.entry_id    6G3W 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6G3W 
_cell.length_a            50.184 
_cell.length_b            52.155 
_cell.length_c            308.892 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6G3W 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? dimeric 2 author_defined_assembly 1 
? dimeric 2 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,G,H,I,J,P,Q 1 1 
C,D,K,L,M,N,O,R,S 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 6 J N N 
? 6 N N N 
#
_pdbx_entity_branch.entity_id    3 
_pdbx_entity_branch.type         oligosaccharide 
#
loop_
_pdbx_entity_branch_link.link_id
_pdbx_entity_branch_link.details
_pdbx_entity_branch_link.entity_id
_pdbx_entity_branch_link.entity_branch_list_num_1
_pdbx_entity_branch_link.entity_branch_list_num_2
_pdbx_entity_branch_link.comp_id_1
_pdbx_entity_branch_link.comp_id_2
_pdbx_entity_branch_link.atom_id_1
_pdbx_entity_branch_link.leaving_atom_id_1
_pdbx_entity_branch_link.atom_stereo_config_1
_pdbx_entity_branch_link.atom_id_2
_pdbx_entity_branch_link.leaving_atom_id_2
_pdbx_entity_branch_link.atom_stereo_config_2
_pdbx_entity_branch_link.value_order
1 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 
2 ? 3 3 2 BMA NAG C1 O1 . O4 HO4 . sing 
#
loop_
_pdbx_branch_scheme.entity_id
_pdbx_branch_scheme.hetero
_pdbx_branch_scheme.asym_id
_pdbx_branch_scheme.mon_id
_pdbx_branch_scheme.num
_pdbx_branch_scheme.pdb_asym_id
_pdbx_branch_scheme.pdb_seq_num
_pdbx_branch_scheme.pdb_mon_id
_pdbx_branch_scheme.auth_asym_id
_pdbx_branch_scheme.auth_seq_num
_pdbx_branch_scheme.auth_mon_id
3 n E NAG 1 E 1 NAG A 217 NAG 
3 n E NAG 2 E 2 NAG A 218 NAG 
3 n E BMA 3 E 3 BMA A 219 BMA 
3 n F NAG 1 F 1 NAG A 220 NAG 
3 n F NAG 2 F 2 NAG A 221 NAG 
3 n F BMA 3 F 3 BMA A 222 BMA 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 34 A CYS 61 1_555 A SG CYS 41 A CYS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? 
disulf ? disulf2 A SG CYS 178 A CYS 205 1_555 A SG CYS 186 A CYS 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf3 B SG CYS 6 B CYS 30 1_555 B SG CYS 71 B CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? 
disulf ? disulf4 B SG CYS 35 B CYS 59 1_555 B SG CYS 42 B CYS 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? 
disulf ? disulf5 B SG CYS 93 B CYS 117 1_555 B SG CYS 120 B CYS 144 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? 
disulf ? disulf6 B SG CYS 180 B CYS 204 1_555 B SG CYS 187 B CYS 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? 
disulf ? disulf7 C SG CYS 34 C CYS 61 1_555 C SG CYS 41 C CYS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? 
disulf ? disulf8 C SG CYS 178 C CYS 205 1_555 C SG CYS 186 C CYS 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? 
disulf ? disulf9 D SG CYS 6 D CYS 30 1_555 D SG CYS 71 D CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? 
disulf ? disulf10 D SG CYS 35 D CYS 59 1_555 D SG CYS 42 D CYS 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? 
disulf ? disulf11 D SG CYS 93 D CYS 117 1_555 D SG CYS 120 D CYS 144 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
disulf ? disulf12 D SG CYS 180 D CYS 204 1_555 D SG CYS 187 D CYS 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? 
covale ? covale1 A ND2 ASN 91 A ASN 118 1_555 G C1 NAG . A NAG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? 
covale ? covale2 A ND2 ASN 126 A ASN 153 1_555 E C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? 
covale ? covale3 A ND2 ASN 160 A ASN 187 1_555 F C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? 
covale ? covale4 B ND2 ASN 28 B ASN 52 1_555 I C1 NAG . B NAG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.457 ? 
covale ? covale5 C ND2 ASN 91 C ASN 118 1_555 K C1 NAG . C NAG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? 
covale ? covale6 C ND2 ASN 126 C ASN 153 1_555 M C1 NAG . C NAG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? 
covale ? covale7 C ND2 ASN 160 C ASN 187 1_555 L C1 NAG . C NAG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? 
covale ? covale8 D ND2 ASN 28 D ASN 52 1_555 O C1 NAG . D NAG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? 
covale ? covale9 E O4 NAG . E NAG 1 1_555 E C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? 
covale ? covale10 E O4 NAG . E NAG 2 1_555 E C1 BMA . E BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.454 ? 
covale ? covale11 F O4 NAG . F NAG 1 1_555 F C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? 
covale ? covale12 F O4 NAG . F NAG 2 1_555 F C1 BMA . F BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 107 n n 
C1 C2 EDO sing 108 n n 
C1 H11 EDO sing 109 n n 
C1 H12 EDO sing 110 n n 
O1 HO1 EDO sing 111 n n 
C2 O2 EDO sing 112 n n 
C2 H21 EDO sing 113 n n 
C2 H22 EDO sing 114 n n 
O2 HO2 EDO sing 115 n n 
#
_atom_sites.entry_id                     6G3W 
_atom_sites.fract_transf_matrix[1][1]    0.019927 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.019174 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003237 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 4 NAG A 1 301 215 NAG NAG . 
H 5 PEG A 1 308 1 PEG PEG . 
I 4 NAG B 1 301 214 NAG NAG . 
J 6 EDO B 1 302 1 EDO EDO . 
K 4 NAG C 1 301 214 NAG NAG . 
L 4 NAG C 1 302 216 NAG NAG . 
M 4 NAG C 1 303 218 NAG NAG . 
N 6 EDO C 1 304 3 EDO EDO . 
O 4 NAG D 1 301 214 NAG NAG . 
P 7 HOH A 1 401 101 HOH HOH . 
P 7 HOH A 2 402 32 HOH HOH . 
P 7 HOH A 3 403 56 HOH HOH . 
P 7 HOH A 4 404 143 HOH HOH . 
P 7 HOH A 5 405 29 HOH HOH . 
P 7 HOH A 6 406 130 HOH HOH . 
P 7 HOH A 7 407 139 HOH HOH . 
P 7 HOH A 8 408 90 HOH HOH . 
P 7 HOH A 9 409 30 HOH HOH . 
P 7 HOH A 10 410 55 HOH HOH . 
P 7 HOH A 11 411 27 HOH HOH . 
P 7 HOH A 12 412 132 HOH HOH . 
P 7 HOH A 13 413 16 HOH HOH . 
P 7 HOH A 14 414 45 HOH HOH . 
P 7 HOH A 15 415 40 HOH HOH . 
P 7 HOH A 16 416 141 HOH HOH . 
P 7 HOH A 17 417 26 HOH HOH . 
P 7 HOH A 18 418 35 HOH HOH . 
P 7 HOH A 19 419 4 HOH HOH . 
P 7 HOH A 20 420 114 HOH HOH . 
P 7 HOH A 21 421 23 HOH HOH . 
P 7 HOH A 22 422 100 HOH HOH . 
P 7 HOH A 23 423 115 HOH HOH . 
P 7 HOH A 24 424 12 HOH HOH . 
P 7 HOH A 25 425 28 HOH HOH . 
P 7 HOH A 26 426 127 HOH HOH . 
P 7 HOH A 27 427 117 HOH HOH . 
P 7 HOH A 28 428 19 HOH HOH . 
P 7 HOH A 29 429 11 HOH HOH . 
P 7 HOH A 30 430 67 HOH HOH . 
P 7 HOH A 31 431 128 HOH HOH . 
P 7 HOH A 32 432 126 HOH HOH . 
P 7 HOH A 33 433 69 HOH HOH . 
P 7 HOH A 34 434 119 HOH HOH . 
P 7 HOH A 35 435 118 HOH HOH . 
P 7 HOH A 36 436 122 HOH HOH . 
P 7 HOH A 37 437 112 HOH HOH . 
P 7 HOH A 38 438 86 HOH HOH . 
P 7 HOH A 39 439 43 HOH HOH . 
P 7 HOH A 40 440 46 HOH HOH . 
P 7 HOH A 41 441 6 HOH HOH . 
P 7 HOH A 42 442 77 HOH HOH . 
P 7 HOH A 43 443 89 HOH HOH . 
P 7 HOH A 44 444 57 HOH HOH . 
P 7 HOH A 45 445 96 HOH HOH . 
P 7 HOH A 46 446 7 HOH HOH . 
P 7 HOH A 47 447 106 HOH HOH . 
Q 7 HOH B 1 401 37 HOH HOH . 
Q 7 HOH B 2 402 80 HOH HOH . 
Q 7 HOH B 3 403 134 HOH HOH . 
Q 7 HOH B 4 404 91 HOH HOH . 
Q 7 HOH B 5 405 121 HOH HOH . 
Q 7 HOH B 6 406 42 HOH HOH . 
Q 7 HOH B 7 407 79 HOH HOH . 
Q 7 HOH B 8 408 39 HOH HOH . 
Q 7 HOH B 9 409 25 HOH HOH . 
Q 7 HOH B 10 410 136 HOH HOH . 
Q 7 HOH B 11 411 8 HOH HOH . 
Q 7 HOH B 12 412 9 HOH HOH . 
Q 7 HOH B 13 413 135 HOH HOH . 
Q 7 HOH B 14 414 21 HOH HOH . 
Q 7 HOH B 15 415 116 HOH HOH . 
Q 7 HOH B 16 416 105 HOH HOH . 
Q 7 HOH B 17 417 72 HOH HOH . 
Q 7 HOH B 18 418 88 HOH HOH . 
Q 7 HOH B 19 419 94 HOH HOH . 
Q 7 HOH B 20 420 92 HOH HOH . 
Q 7 HOH B 21 421 1 HOH HOH . 
Q 7 HOH B 22 422 129 HOH HOH . 
Q 7 HOH B 23 423 50 HOH HOH . 
Q 7 HOH B 24 424 78 HOH HOH . 
Q 7 HOH B 25 425 131 HOH HOH . 
Q 7 HOH B 26 426 13 HOH HOH . 
Q 7 HOH B 27 427 3 HOH HOH . 
Q 7 HOH B 28 428 99 HOH HOH . 
Q 7 HOH B 29 429 138 HOH HOH . 
Q 7 HOH B 30 430 58 HOH HOH . 
Q 7 HOH B 31 431 65 HOH HOH . 
Q 7 HOH B 32 432 85 HOH HOH . 
Q 7 HOH B 33 433 120 HOH HOH . 
Q 7 HOH B 34 434 2 HOH HOH . 
Q 7 HOH B 35 435 10 HOH HOH . 
Q 7 HOH B 36 436 140 HOH HOH . 
Q 7 HOH B 37 437 63 HOH HOH . 
Q 7 HOH B 38 438 93 HOH HOH . 
Q 7 HOH B 39 439 47 HOH HOH . 
Q 7 HOH B 40 440 81 HOH HOH . 
Q 7 HOH B 41 441 5 HOH HOH . 
Q 7 HOH B 42 442 137 HOH HOH . 
Q 7 HOH B 43 443 98 HOH HOH . 
Q 7 HOH B 44 444 20 HOH HOH . 
Q 7 HOH B 45 445 48 HOH HOH . 
Q 7 HOH B 46 446 54 HOH HOH . 
Q 7 HOH B 47 447 66 HOH HOH . 
Q 7 HOH B 48 448 59 HOH HOH . 
Q 7 HOH B 49 449 52 HOH HOH . 
Q 7 HOH B 50 450 53 HOH HOH . 
Q 7 HOH B 51 451 103 HOH HOH . 
Q 7 HOH B 52 452 113 HOH HOH . 
Q 7 HOH B 53 453 124 HOH HOH . 
Q 7 HOH B 54 454 125 HOH HOH . 
Q 7 HOH B 55 455 68 HOH HOH . 
Q 7 HOH B 56 456 75 HOH HOH . 
Q 7 HOH B 57 457 61 HOH HOH . 
Q 7 HOH B 58 458 87 HOH HOH . 
Q 7 HOH B 59 459 76 HOH HOH . 
R 7 HOH C 1 401 123 HOH HOH . 
R 7 HOH C 2 402 84 HOH HOH . 
R 7 HOH C 3 403 102 HOH HOH . 
R 7 HOH C 4 404 36 HOH HOH . 
R 7 HOH C 5 405 14 HOH HOH . 
R 7 HOH C 6 406 97 HOH HOH . 
R 7 HOH C 7 407 24 HOH HOH . 
R 7 HOH C 8 408 108 HOH HOH . 
R 7 HOH C 9 409 82 HOH HOH . 
R 7 HOH C 10 410 64 HOH HOH . 
R 7 HOH C 11 411 60 HOH HOH . 
R 7 HOH C 12 412 73 HOH HOH . 
R 7 HOH C 13 413 104 HOH HOH . 
R 7 HOH C 14 414 95 HOH HOH . 
R 7 HOH C 15 415 74 HOH HOH . 
R 7 HOH C 16 416 107 HOH HOH . 
R 7 HOH C 17 417 41 HOH HOH . 
R 7 HOH C 18 418 133 HOH HOH . 
R 7 HOH C 19 419 49 HOH HOH . 
R 7 HOH C 20 420 33 HOH HOH . 
R 7 HOH C 21 421 71 HOH HOH . 
R 7 HOH C 22 422 83 HOH HOH . 
R 7 HOH C 23 423 62 HOH HOH . 
S 7 HOH D 1 401 38 HOH HOH . 
S 7 HOH D 2 402 18 HOH HOH . 
S 7 HOH D 3 403 44 HOH HOH . 
S 7 HOH D 4 404 22 HOH HOH . 
S 7 HOH D 5 405 31 HOH HOH . 
S 7 HOH D 6 406 142 HOH HOH . 
S 7 HOH D 7 407 70 HOH HOH . 
S 7 HOH D 8 408 15 HOH HOH . 
S 7 HOH D 9 409 111 HOH HOH . 
S 7 HOH D 10 410 110 HOH HOH . 
S 7 HOH D 11 411 17 HOH HOH . 
S 7 HOH D 12 412 34 HOH HOH . 
S 7 HOH D 13 413 109 HOH HOH . 
S 7 HOH D 14 414 51 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . J 6 -35.773 1.398 155.92 1 60.1 ? C1 EDO 302 B 1 
HETATM 2 O O1 EDO . . . J 6 -34.544 0.895 156.466 1 58.62 ? O1 EDO 302 B 1 
HETATM 3 C C2 EDO . . . J 6 -35.553 2.793 155.335 1 58.16 ? C2 EDO 302 B 1 
HETATM 4 O O2 EDO . . . J 6 -36.803 3.391 154.947 1 55.21 ? O2 EDO 302 B 1 
#
_model_server_stats.io_time_ms              19 
_model_server_stats.parse_time_ms           18 
_model_server_stats.create_model_time_ms    21 
_model_server_stats.query_time_ms           340 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           4 
#