data_6G3Y # _model_server_result.job_id 8R3U3HkQD_4eY-DTXTY4fw _model_server_result.datetime_utc '2024-12-14 08:52:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6g3y # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":401}' # _entry.id 6G3Y # _exptl.entry_id 6G3Y _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 477.299 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-(4-azanyl-2-oxidanylidene-3~{H}-benzimidazol-1-yl)-~{N}-(4-iodophenyl)piperidine-1-carboxamide _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6G3Y _cell.length_a 80.817 _cell.length_b 81.357 _cell.length_c 169.157 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6G3Y _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,I 1 1 B,F,G,J 2 1 C,H,K 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 F N N ? 2 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 269 A HIS 276 1_555 E NI NI . A NI 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.208 ? metalc ? metalc2 A NE2 HIS 275 A HIS 282 1_555 E NI NI . A NI 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.208 ? metalc ? metalc3 E NI NI . A NI 402 1_555 B NE2 HIS 269 B HIS 276 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.155 ? metalc ? metalc4 E NI NI . A NI 402 1_555 B NE2 HIS 275 B HIS 282 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.193 ? metalc ? metalc5 E NI NI . A NI 402 1_555 C NE2 HIS 269 C HIS 276 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.234 ? metalc ? metalc6 E NI NI . A NI 402 1_555 C NE2 HIS 275 C HIS 282 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.205 ? # _chem_comp.formula 'C19 H20 I N5 O2' _chem_comp.formula_weight 477.299 _chem_comp.id ELB _chem_comp.mon_nstd_flag . _chem_comp.name 4-(4-azanyl-2-oxidanylidene-3~{H}-benzimidazol-1-yl)-~{N}-(4-iodophenyl)piperidine-1-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms TH5675 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N01 C02 ELB sing 89 n n N04 C03 ELB sing 90 n n N04 C05 ELB sing 91 n n C02 C03 ELB doub 92 n y C02 C27 ELB sing 93 n y C03 C24 ELB sing 94 n y O06 C05 ELB doub 95 n n C27 C26 ELB doub 96 n y C05 N07 ELB sing 97 n n C24 N07 ELB sing 98 n n C24 C25 ELB doub 99 n y N07 C08 ELB sing 100 n n C26 C25 ELB sing 101 n y C13 C08 ELB sing 102 n n C13 C12 ELB sing 103 n n C08 C09 ELB sing 104 n n C12 N11 ELB sing 105 n n C09 C10 ELB sing 106 n n N11 C10 ELB sing 107 n n N11 C14 ELB sing 108 n n O15 C14 ELB doub 109 n n C14 N16 ELB sing 110 n n N16 C17 ELB sing 111 n n C17 C23 ELB doub 112 n y C17 C18 ELB sing 113 n y C23 C22 ELB sing 114 n y C18 C19 ELB doub 115 n y C22 C20 ELB doub 116 n y C19 C20 ELB sing 117 n y C20 I21 ELB sing 118 n n C10 H1 ELB sing 119 n n C10 H2 ELB sing 120 n n C13 H3 ELB sing 121 n n C13 H4 ELB sing 122 n n C22 H5 ELB sing 123 n n C26 H6 ELB sing 124 n n N01 H7 ELB sing 125 n n N01 H8 ELB sing 126 n n N04 H9 ELB sing 127 n n C08 H10 ELB sing 128 n n C09 H11 ELB sing 129 n n C09 H12 ELB sing 130 n n C12 H13 ELB sing 131 n n C12 H14 ELB sing 132 n n N16 H15 ELB sing 133 n n C18 H16 ELB sing 134 n n C19 H17 ELB sing 135 n n C23 H18 ELB sing 136 n n C25 H19 ELB sing 137 n n C27 H20 ELB sing 138 n n # _atom_sites.entry_id 6G3Y _atom_sites.fract_transf_matrix[1][1] 0.012374 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012292 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005912 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 ELB A 1 401 1 ELB LIG . E 3 NI A 1 402 1 NI NI . F 2 ELB B 1 401 2 ELB LIG . G 4 ACT B 1 402 1 ACT ACT . H 2 ELB C 1 401 3 ELB LIG . I 5 HOH A 1 501 135 HOH HOH . I 5 HOH A 2 502 31 HOH HOH . I 5 HOH A 3 503 94 HOH HOH . I 5 HOH A 4 504 2 HOH HOH . I 5 HOH A 5 505 128 HOH HOH . I 5 HOH A 6 506 130 HOH HOH . I 5 HOH A 7 507 173 HOH HOH . I 5 HOH A 8 508 4 HOH HOH . I 5 HOH A 9 509 109 HOH HOH . I 5 HOH A 10 510 189 HOH HOH . I 5 HOH A 11 511 121 HOH HOH . I 5 HOH A 12 512 6 HOH HOH . I 5 HOH A 13 513 129 HOH HOH . I 5 HOH A 14 514 89 HOH HOH . I 5 HOH A 15 515 3 HOH HOH . I 5 HOH A 16 516 122 HOH HOH . I 5 HOH A 17 517 57 HOH HOH . I 5 HOH A 18 518 1 HOH HOH . I 5 HOH A 19 519 87 HOH HOH . I 5 HOH A 20 520 181 HOH HOH . I 5 HOH A 21 521 118 HOH HOH . I 5 HOH A 22 522 58 HOH HOH . I 5 HOH A 23 523 167 HOH HOH . I 5 HOH A 24 524 88 HOH HOH . I 5 HOH A 25 525 168 HOH HOH . I 5 HOH A 26 526 119 HOH HOH . I 5 HOH A 27 527 30 HOH HOH . I 5 HOH A 28 528 38 HOH HOH . I 5 HOH A 29 529 123 HOH HOH . I 5 HOH A 30 530 13 HOH HOH . I 5 HOH A 31 531 110 HOH HOH . I 5 HOH A 32 532 36 HOH HOH . I 5 HOH A 33 533 33 HOH HOH . I 5 HOH A 34 534 169 HOH HOH . I 5 HOH A 35 535 35 HOH HOH . I 5 HOH A 36 536 107 HOH HOH . I 5 HOH A 37 537 5 HOH HOH . I 5 HOH A 38 538 48 HOH HOH . I 5 HOH A 39 539 50 HOH HOH . I 5 HOH A 40 540 7 HOH HOH . I 5 HOH A 41 541 59 HOH HOH . I 5 HOH A 42 542 164 HOH HOH . I 5 HOH A 43 543 74 HOH HOH . I 5 HOH A 44 544 200 HOH HOH . I 5 HOH A 45 545 143 HOH HOH . I 5 HOH A 46 546 190 HOH HOH . I 5 HOH A 47 547 163 HOH HOH . I 5 HOH A 48 548 32 HOH HOH . I 5 HOH A 49 549 34 HOH HOH . I 5 HOH A 50 550 127 HOH HOH . J 5 HOH B 1 501 29 HOH HOH . J 5 HOH B 2 502 170 HOH HOH . J 5 HOH B 3 503 43 HOH HOH . J 5 HOH B 4 504 51 HOH HOH . J 5 HOH B 5 505 151 HOH HOH . J 5 HOH B 6 506 93 HOH HOH . J 5 HOH B 7 507 199 HOH HOH . J 5 HOH B 8 508 186 HOH HOH . J 5 HOH B 9 509 24 HOH HOH . J 5 HOH B 10 510 41 HOH HOH . J 5 HOH B 11 511 78 HOH HOH . J 5 HOH B 12 512 176 HOH HOH . J 5 HOH B 13 513 183 HOH HOH . J 5 HOH B 14 514 61 HOH HOH . J 5 HOH B 15 515 14 HOH HOH . J 5 HOH B 16 516 11 HOH HOH . J 5 HOH B 17 517 19 HOH HOH . J 5 HOH B 18 518 45 HOH HOH . J 5 HOH B 19 519 188 HOH HOH . J 5 HOH B 20 520 8 HOH HOH . J 5 HOH B 21 521 16 HOH HOH . J 5 HOH B 22 522 82 HOH HOH . J 5 HOH B 23 523 20 HOH HOH . J 5 HOH B 24 524 28 HOH HOH . J 5 HOH B 25 525 46 HOH HOH . J 5 HOH B 26 526 84 HOH HOH . J 5 HOH B 27 527 68 HOH HOH . J 5 HOH B 28 528 187 HOH HOH . J 5 HOH B 29 529 23 HOH HOH . J 5 HOH B 30 530 26 HOH HOH . J 5 HOH B 31 531 194 HOH HOH . J 5 HOH B 32 532 184 HOH HOH . J 5 HOH B 33 533 126 HOH HOH . J 5 HOH B 34 534 18 HOH HOH . J 5 HOH B 35 535 17 HOH HOH . J 5 HOH B 36 536 27 HOH HOH . J 5 HOH B 37 537 191 HOH HOH . J 5 HOH B 38 538 192 HOH HOH . J 5 HOH B 39 539 22 HOH HOH . J 5 HOH B 40 540 171 HOH HOH . J 5 HOH B 41 541 21 HOH HOH . J 5 HOH B 42 542 201 HOH HOH . J 5 HOH B 43 543 12 HOH HOH . J 5 HOH B 44 544 60 HOH HOH . J 5 HOH B 45 545 62 HOH HOH . J 5 HOH B 46 546 185 HOH HOH . J 5 HOH B 47 547 198 HOH HOH . J 5 HOH B 48 548 182 HOH HOH . J 5 HOH B 49 549 179 HOH HOH . J 5 HOH B 50 550 44 HOH HOH . J 5 HOH B 51 551 25 HOH HOH . K 5 HOH C 1 501 9 HOH HOH . K 5 HOH C 2 502 92 HOH HOH . K 5 HOH C 3 503 10 HOH HOH . K 5 HOH C 4 504 172 HOH HOH . K 5 HOH C 5 505 177 HOH HOH . K 5 HOH C 6 506 197 HOH HOH . K 5 HOH C 7 507 105 HOH HOH . K 5 HOH C 8 508 124 HOH HOH . K 5 HOH C 9 509 136 HOH HOH . K 5 HOH C 10 510 180 HOH HOH . K 5 HOH C 11 511 80 HOH HOH . K 5 HOH C 12 512 178 HOH HOH . K 5 HOH C 13 513 15 HOH HOH . K 5 HOH C 14 514 100 HOH HOH . K 5 HOH C 15 515 196 HOH HOH . K 5 HOH C 16 516 103 HOH HOH . K 5 HOH C 17 517 138 HOH HOH . K 5 HOH C 18 518 195 HOH HOH . K 5 HOH C 19 519 70 HOH HOH . K 5 HOH C 20 520 193 HOH HOH . K 5 HOH C 21 521 165 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 ELB . . . H 2 8.219 7.412 -8.018 1 82.25 ? C10 ELB 401 C 1 HETATM 2 C C13 ELB . . . H 2 8.468 5.061 -6.321 1 81.1 ? C13 ELB 401 C 1 HETATM 3 C C17 ELB . . . H 2 5.405 9.752 -5.674 1 93.25 ? C17 ELB 401 C 1 HETATM 4 C C20 ELB . . . H 2 4.025 11.337 -3.884 1 102.19 ? C20 ELB 401 C 1 HETATM 5 C C22 ELB . . . H 2 3.326 10.402 -4.659 1 99.45 ? C22 ELB 401 C 1 HETATM 6 C C24 ELB . . . H 2 9.828 5.86 -3.798 1 76.53 ? C24 ELB 401 C 1 HETATM 7 C C26 ELB . . . H 2 8.558 6.605 -1.814 1 75.15 ? C26 ELB 401 C 1 HETATM 8 N N01 ELB . . . H 2 11.572 4.685 -0.658 1 72.18 ? N01 ELB 401 C 1 HETATM 9 C C02 ELB . . . H 2 10.603 5.31 -1.512 1 75.56 ? C02 ELB 401 C 1 HETATM 10 C C03 ELB . . . H 2 10.753 5.247 -2.935 1 76.5 ? C03 ELB 401 C 1 HETATM 11 N N04 ELB . . . H 2 11.77 4.628 -3.74 1 78.05 ? N04 ELB 401 C 1 HETATM 12 C C05 ELB . . . H 2 11.45 4.861 -5.098 1 77.39 ? C05 ELB 401 C 1 HETATM 13 O O06 ELB . . . H 2 12.121 4.468 -6.028 1 75.33 ? O06 ELB 401 C 1 HETATM 14 N N07 ELB . . . H 2 10.238 5.598 -5.186 1 76.47 ? N07 ELB 401 C 1 HETATM 15 C C08 ELB . . . H 2 9.648 6.04 -6.475 1 79.16 ? C08 ELB 401 C 1 HETATM 16 C C09 ELB . . . H 2 9.333 7.428 -6.989 1 80.09 ? C09 ELB 401 C 1 HETATM 17 N N11 ELB . . . H 2 7.158 6.798 -7.254 1 83.88 ? N11 ELB 401 C 1 HETATM 18 C C12 ELB . . . H 2 7.281 5.35 -7.263 1 83.63 ? C12 ELB 401 C 1 HETATM 19 C C14 ELB . . . H 2 6.24 7.55 -6.438 1 86.11 ? C14 ELB 401 C 1 HETATM 20 O O15 ELB . . . H 2 5.403 6.97 -5.764 1 87.61 ? O15 ELB 401 C 1 HETATM 21 N N16 ELB . . . H 2 6.277 8.99 -6.489 1 87.34 ? N16 ELB 401 C 1 HETATM 22 C C18 ELB . . . H 2 6.094 10.669 -4.88 1 97.38 ? C18 ELB 401 C 1 HETATM 23 C C19 ELB . . . H 2 5.401 11.474 -3.993 1 100.19 ? C19 ELB 401 C 1 HETATM 24 I I21 ELB . . . H 2 3.087 12.6 -2.5 1 119.11 ? I21 ELB 401 C 1 HETATM 25 C C23 ELB . . . H 2 4.02 9.586 -5.561 1 96.55 ? C23 ELB 401 C 1 HETATM 26 C C25 ELB . . . H 2 8.707 6.545 -3.219 1 76.17 ? C25 ELB 401 C 1 HETATM 27 C C27 ELB . . . H 2 9.503 5.99 -0.956 1 74.68 ? C27 ELB 401 C 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 330 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 27 #