data_6G3Y # _model_server_result.job_id pIunV6KrG54pqXXGMMLdAA _model_server_result.datetime_utc '2024-12-14 09:05:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6g3y # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":402}' # _entry.id 6G3Y # _exptl.entry_id 6G3Y _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 58.693 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NICKEL (II) ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6G3Y _cell.length_a 80.817 _cell.length_b 81.357 _cell.length_c 169.157 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6G3Y _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,I 1 1 B,F,G,J 2 1 C,H,K 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 269 A HIS 276 1_555 E NI NI . A NI 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.208 ? metalc ? metalc2 A NE2 HIS 275 A HIS 282 1_555 E NI NI . A NI 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.208 ? metalc ? metalc3 E NI NI . A NI 402 1_555 B NE2 HIS 269 B HIS 276 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.155 ? metalc ? metalc4 E NI NI . A NI 402 1_555 B NE2 HIS 275 B HIS 282 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.193 ? metalc ? metalc5 E NI NI . A NI 402 1_555 C NE2 HIS 269 C HIS 276 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.234 ? metalc ? metalc6 E NI NI . A NI 402 1_555 C NE2 HIS 275 C HIS 282 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.205 ? # _chem_comp.formula 'Ni 2' _chem_comp.formula_weight 58.693 _chem_comp.id NI _chem_comp.mon_nstd_flag . _chem_comp.name 'NICKEL (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6G3Y _atom_sites.fract_transf_matrix[1][1] 0.012374 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012292 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005912 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 ELB A 1 401 1 ELB LIG . E 3 NI A 1 402 1 NI NI . F 2 ELB B 1 401 2 ELB LIG . G 4 ACT B 1 402 1 ACT ACT . H 2 ELB C 1 401 3 ELB LIG . I 5 HOH A 1 501 135 HOH HOH . I 5 HOH A 2 502 31 HOH HOH . I 5 HOH A 3 503 94 HOH HOH . I 5 HOH A 4 504 2 HOH HOH . I 5 HOH A 5 505 128 HOH HOH . I 5 HOH A 6 506 130 HOH HOH . I 5 HOH A 7 507 173 HOH HOH . I 5 HOH A 8 508 4 HOH HOH . I 5 HOH A 9 509 109 HOH HOH . I 5 HOH A 10 510 189 HOH HOH . I 5 HOH A 11 511 121 HOH HOH . I 5 HOH A 12 512 6 HOH HOH . I 5 HOH A 13 513 129 HOH HOH . I 5 HOH A 14 514 89 HOH HOH . I 5 HOH A 15 515 3 HOH HOH . I 5 HOH A 16 516 122 HOH HOH . I 5 HOH A 17 517 57 HOH HOH . I 5 HOH A 18 518 1 HOH HOH . I 5 HOH A 19 519 87 HOH HOH . I 5 HOH A 20 520 181 HOH HOH . I 5 HOH A 21 521 118 HOH HOH . I 5 HOH A 22 522 58 HOH HOH . I 5 HOH A 23 523 167 HOH HOH . I 5 HOH A 24 524 88 HOH HOH . I 5 HOH A 25 525 168 HOH HOH . I 5 HOH A 26 526 119 HOH HOH . I 5 HOH A 27 527 30 HOH HOH . I 5 HOH A 28 528 38 HOH HOH . I 5 HOH A 29 529 123 HOH HOH . I 5 HOH A 30 530 13 HOH HOH . I 5 HOH A 31 531 110 HOH HOH . I 5 HOH A 32 532 36 HOH HOH . I 5 HOH A 33 533 33 HOH HOH . I 5 HOH A 34 534 169 HOH HOH . I 5 HOH A 35 535 35 HOH HOH . I 5 HOH A 36 536 107 HOH HOH . I 5 HOH A 37 537 5 HOH HOH . I 5 HOH A 38 538 48 HOH HOH . I 5 HOH A 39 539 50 HOH HOH . I 5 HOH A 40 540 7 HOH HOH . I 5 HOH A 41 541 59 HOH HOH . I 5 HOH A 42 542 164 HOH HOH . I 5 HOH A 43 543 74 HOH HOH . I 5 HOH A 44 544 200 HOH HOH . I 5 HOH A 45 545 143 HOH HOH . I 5 HOH A 46 546 190 HOH HOH . I 5 HOH A 47 547 163 HOH HOH . I 5 HOH A 48 548 32 HOH HOH . I 5 HOH A 49 549 34 HOH HOH . I 5 HOH A 50 550 127 HOH HOH . J 5 HOH B 1 501 29 HOH HOH . J 5 HOH B 2 502 170 HOH HOH . J 5 HOH B 3 503 43 HOH HOH . J 5 HOH B 4 504 51 HOH HOH . J 5 HOH B 5 505 151 HOH HOH . J 5 HOH B 6 506 93 HOH HOH . J 5 HOH B 7 507 199 HOH HOH . J 5 HOH B 8 508 186 HOH HOH . J 5 HOH B 9 509 24 HOH HOH . J 5 HOH B 10 510 41 HOH HOH . J 5 HOH B 11 511 78 HOH HOH . J 5 HOH B 12 512 176 HOH HOH . J 5 HOH B 13 513 183 HOH HOH . J 5 HOH B 14 514 61 HOH HOH . J 5 HOH B 15 515 14 HOH HOH . J 5 HOH B 16 516 11 HOH HOH . J 5 HOH B 17 517 19 HOH HOH . J 5 HOH B 18 518 45 HOH HOH . J 5 HOH B 19 519 188 HOH HOH . J 5 HOH B 20 520 8 HOH HOH . J 5 HOH B 21 521 16 HOH HOH . J 5 HOH B 22 522 82 HOH HOH . J 5 HOH B 23 523 20 HOH HOH . J 5 HOH B 24 524 28 HOH HOH . J 5 HOH B 25 525 46 HOH HOH . J 5 HOH B 26 526 84 HOH HOH . J 5 HOH B 27 527 68 HOH HOH . J 5 HOH B 28 528 187 HOH HOH . J 5 HOH B 29 529 23 HOH HOH . J 5 HOH B 30 530 26 HOH HOH . J 5 HOH B 31 531 194 HOH HOH . J 5 HOH B 32 532 184 HOH HOH . J 5 HOH B 33 533 126 HOH HOH . J 5 HOH B 34 534 18 HOH HOH . J 5 HOH B 35 535 17 HOH HOH . J 5 HOH B 36 536 27 HOH HOH . J 5 HOH B 37 537 191 HOH HOH . J 5 HOH B 38 538 192 HOH HOH . J 5 HOH B 39 539 22 HOH HOH . J 5 HOH B 40 540 171 HOH HOH . J 5 HOH B 41 541 21 HOH HOH . J 5 HOH B 42 542 201 HOH HOH . J 5 HOH B 43 543 12 HOH HOH . J 5 HOH B 44 544 60 HOH HOH . J 5 HOH B 45 545 62 HOH HOH . J 5 HOH B 46 546 185 HOH HOH . J 5 HOH B 47 547 198 HOH HOH . J 5 HOH B 48 548 182 HOH HOH . J 5 HOH B 49 549 179 HOH HOH . J 5 HOH B 50 550 44 HOH HOH . J 5 HOH B 51 551 25 HOH HOH . K 5 HOH C 1 501 9 HOH HOH . K 5 HOH C 2 502 92 HOH HOH . K 5 HOH C 3 503 10 HOH HOH . K 5 HOH C 4 504 172 HOH HOH . K 5 HOH C 5 505 177 HOH HOH . K 5 HOH C 6 506 197 HOH HOH . K 5 HOH C 7 507 105 HOH HOH . K 5 HOH C 8 508 124 HOH HOH . K 5 HOH C 9 509 136 HOH HOH . K 5 HOH C 10 510 180 HOH HOH . K 5 HOH C 11 511 80 HOH HOH . K 5 HOH C 12 512 178 HOH HOH . K 5 HOH C 13 513 15 HOH HOH . K 5 HOH C 14 514 100 HOH HOH . K 5 HOH C 15 515 196 HOH HOH . K 5 HOH C 16 516 103 HOH HOH . K 5 HOH C 17 517 138 HOH HOH . K 5 HOH C 18 518 195 HOH HOH . K 5 HOH C 19 519 70 HOH HOH . K 5 HOH C 20 520 193 HOH HOH . K 5 HOH C 21 521 165 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NI _atom_site.label_atom_id NI _atom_site.label_comp_id NI _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 3 _atom_site.Cartn_x 0.427 _atom_site.Cartn_y -4.311 _atom_site.Cartn_z 13.178 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 40.09 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NI _atom_site.auth_comp_id NI _atom_site.auth_seq_id 402 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 29 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #