data_6G4P # _model_server_result.job_id eYyp_MiKcXQaljWjesBDxQ _model_server_result.datetime_utc '2024-11-13 11:22:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6g4p # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":601}' # _entry.id 6G4P # _exptl.entry_id 6G4P _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6G4P _cell.length_a 91.51 _cell.length_b 106.56 _cell.length_c 150.2 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6G4P _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 K N N ? 2 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 67 A CYS 67 1_555 A SG CYS 94 A CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? disulf ? disulf2 A SG CYS 254 A CYS 254 1_555 A SG CYS 265 A CYS 265 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? disulf ? disulf3 A SG CYS 402 A CYS 402 1_555 A SG CYS 521 A CYS 521 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? disulf ? disulf4 B SG CYS 67 B CYS 67 1_555 B SG CYS 94 B CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? disulf ? disulf5 B SG CYS 254 B CYS 254 1_555 B SG CYS 265 B CYS 265 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf6 B SG CYS 402 B CYS 402 1_555 B SG CYS 521 B CYS 521 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? covale ? covale1 A ND2 ASN 59 A ASN 59 1_555 C C1 NAG . A NAG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale2 A OG SER 200 A SER 200 1_555 E P01 ELT . A ELT 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.631 ? covale ? covale3 A ND2 ASN 416 A ASN 416 1_555 D C1 NAG . A NAG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale4 B ND2 ASN 59 B ASN 59 1_555 K C1 NAG . B NAG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.453 ? covale ? covale5 B OG SER 200 B SER 200 1_555 M P01 ELT . B ELT 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.654 ? covale ? covale6 B ND2 ASN 416 B ASN 416 1_555 L C1 NAG . B NAG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.517 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 315 n n C1 O1 NAG sing 316 n n C1 O5 NAG sing 317 n n C1 H1 NAG sing 318 n n C2 C3 NAG sing 319 n n C2 N2 NAG sing 320 n n C2 H2 NAG sing 321 n n C3 C4 NAG sing 322 n n C3 O3 NAG sing 323 n n C3 H3 NAG sing 324 n n C4 C5 NAG sing 325 n n C4 O4 NAG sing 326 n n C4 H4 NAG sing 327 n n C5 C6 NAG sing 328 n n C5 O5 NAG sing 329 n n C5 H5 NAG sing 330 n n C6 O6 NAG sing 331 n n C6 H61 NAG sing 332 n n C6 H62 NAG sing 333 n n C7 C8 NAG sing 334 n n C7 N2 NAG sing 335 n n C7 O7 NAG doub 336 n n C8 H81 NAG sing 337 n n C8 H82 NAG sing 338 n n C8 H83 NAG sing 339 n n N2 HN2 NAG sing 340 n n O1 HO1 NAG sing 341 n n O3 HO3 NAG sing 342 n n O4 HO4 NAG sing 343 n n O6 HO6 NAG sing 344 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 6G4P _atom_sites.fract_transf_matrix[1][1] 0.010928 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009384 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006658 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAG A 1 601 560 NAG NAG . D 2 NAG A 1 602 561 NAG NAG . E 3 ELT A 1 603 550 ELT TBN . F 4 JDS A 1 604 551 JDS JDS . G 5 CL A 1 605 1 CL CL . H 5 CL A 1 606 5 CL CL . I 5 CL A 1 607 8 CL CL . J 6 PG4 A 1 608 2 PG4 PG4 . K 2 NAG B 1 601 560 NAG NAG . L 2 NAG B 1 602 561 NAG NAG . M 3 ELT B 1 603 550 ELT TBN . N 4 JDS B 1 604 551 JDS JDS . O 5 CL B 1 605 2 CL CL . P 5 CL B 1 606 3 CL CL . Q 5 CL B 1 607 4 CL CL . R 5 CL B 1 608 6 CL CL . S 5 CL B 1 609 7 CL CL . T 6 PG4 B 1 610 1 PG4 PG4 . U 7 HOH A 1 701 38 HOH HOH . U 7 HOH A 2 702 26 HOH HOH . U 7 HOH A 3 703 51 HOH HOH . U 7 HOH A 4 704 27 HOH HOH . U 7 HOH A 5 705 36 HOH HOH . U 7 HOH A 6 706 8 HOH HOH . U 7 HOH A 7 707 35 HOH HOH . U 7 HOH A 8 708 37 HOH HOH . U 7 HOH A 9 709 10 HOH HOH . U 7 HOH A 10 710 11 HOH HOH . U 7 HOH A 11 711 34 HOH HOH . U 7 HOH A 12 712 29 HOH HOH . U 7 HOH A 13 713 39 HOH HOH . U 7 HOH A 14 714 50 HOH HOH . U 7 HOH A 15 715 49 HOH HOH . U 7 HOH A 16 716 46 HOH HOH . U 7 HOH A 17 717 32 HOH HOH . U 7 HOH A 18 718 12 HOH HOH . U 7 HOH A 19 719 9 HOH HOH . U 7 HOH A 20 720 33 HOH HOH . U 7 HOH A 21 721 25 HOH HOH . U 7 HOH A 22 722 24 HOH HOH . U 7 HOH A 23 723 52 HOH HOH . U 7 HOH A 24 724 53 HOH HOH . U 7 HOH A 25 725 31 HOH HOH . U 7 HOH A 26 726 28 HOH HOH . U 7 HOH A 27 727 14 HOH HOH . U 7 HOH A 28 728 57 HOH HOH . U 7 HOH A 29 729 13 HOH HOH . U 7 HOH A 30 730 30 HOH HOH . V 7 HOH B 1 701 7 HOH HOH . V 7 HOH B 2 702 47 HOH HOH . V 7 HOH B 3 703 20 HOH HOH . V 7 HOH B 4 704 23 HOH HOH . V 7 HOH B 5 705 48 HOH HOH . V 7 HOH B 6 706 22 HOH HOH . V 7 HOH B 7 707 56 HOH HOH . V 7 HOH B 8 708 44 HOH HOH . V 7 HOH B 9 709 6 HOH HOH . V 7 HOH B 10 710 21 HOH HOH . V 7 HOH B 11 711 45 HOH HOH . V 7 HOH B 12 712 15 HOH HOH . V 7 HOH B 13 713 16 HOH HOH . V 7 HOH B 14 714 19 HOH HOH . V 7 HOH B 15 715 55 HOH HOH . V 7 HOH B 16 716 4 HOH HOH . V 7 HOH B 17 717 42 HOH HOH . V 7 HOH B 18 718 5 HOH HOH . V 7 HOH B 19 719 40 HOH HOH . V 7 HOH B 20 720 3 HOH HOH . V 7 HOH B 21 721 18 HOH HOH . V 7 HOH B 22 722 54 HOH HOH . V 7 HOH B 23 723 17 HOH HOH . V 7 HOH B 24 724 41 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . K 2 -6.932 -8.527 -36.922 1 76.92 ? C1 NAG 601 B 1 HETATM 2 C C2 NAG . . . K 2 -6.911 -9.15 -38.326 1 84.78 ? C2 NAG 601 B 1 HETATM 3 C C3 NAG . . . K 2 -6.186 -10.506 -38.308 1 86.44 ? C3 NAG 601 B 1 HETATM 4 C C4 NAG . . . K 2 -4.81 -10.406 -37.655 1 91.53 ? C4 NAG 601 B 1 HETATM 5 C C5 NAG . . . K 2 -4.921 -9.774 -36.268 1 86.61 ? C5 NAG 601 B 1 HETATM 6 C C6 NAG . . . K 2 -3.58 -9.544 -35.592 1 85.33 ? C6 NAG 601 B 1 HETATM 7 C C7 NAG . . . K 2 -8.844 -8.493 -39.745 1 73.45 ? C7 NAG 601 B 1 HETATM 8 C C8 NAG . . . K 2 -10.247 -8.841 -40.129 1 69.58 ? C8 NAG 601 B 1 HETATM 9 N N2 NAG . . . K 2 -8.268 -9.302 -38.837 1 83.21 ? N2 NAG 601 B 1 HETATM 10 O O3 NAG . . . K 2 -6.018 -10.967 -39.642 1 80.04 ? O3 NAG 601 B 1 HETATM 11 O O4 NAG . . . K 2 -4.226 -11.703 -37.559 1 88.12 ? O4 NAG 601 B 1 HETATM 12 O O5 NAG . . . K 2 -5.567 -8.494 -36.37 1 83.04 ? O5 NAG 601 B 1 HETATM 13 O O6 NAG . . . K 2 -2.495 -9.407 -36.505 1 81.29 ? O6 NAG 601 B 1 HETATM 14 O O7 NAG . . . K 2 -8.261 -7.528 -40.238 1 61.31 ? O7 NAG 601 B 1 # _model_server_stats.io_time_ms 25 _model_server_stats.parse_time_ms 27 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 283 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 14 #