data_6G4P
#
_model_server_result.job_id            fs-qyt-ANd3p2L7fGwynKw 
_model_server_result.datetime_utc      '2024-11-13 11:25:56' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6g4p 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"N","auth_seq_id":604}' 
#
_entry.id    6G4P 
#
_exptl.entry_id    6G4P 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              424.923 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            6-[4-[(7-chloranyl-1,2,3,4-tetrahydroacridin-9-yl)amino]butyl]-2-[(~{Z})-hydroxyiminomethyl]pyridin-3-ol 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6G4P 
_cell.length_a            91.51 
_cell.length_b            106.56 
_cell.length_c            150.2 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6G4P 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 F N N 
? 4 N N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 67 A CYS 67 1_555 A SG CYS 94 A CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? 
disulf ? disulf2 A SG CYS 254 A CYS 254 1_555 A SG CYS 265 A CYS 265 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? 
disulf ? disulf3 A SG CYS 402 A CYS 402 1_555 A SG CYS 521 A CYS 521 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? 
disulf ? disulf4 B SG CYS 67 B CYS 67 1_555 B SG CYS 94 B CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? 
disulf ? disulf5 B SG CYS 254 B CYS 254 1_555 B SG CYS 265 B CYS 265 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
disulf ? disulf6 B SG CYS 402 B CYS 402 1_555 B SG CYS 521 B CYS 521 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? 
covale ? covale1 A ND2 ASN 59 A ASN 59 1_555 C C1 NAG . A NAG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? 
covale ? covale2 A OG SER 200 A SER 200 1_555 E P01 ELT . A ELT 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.631 ? 
covale ? covale3 A ND2 ASN 416 A ASN 416 1_555 D C1 NAG . A NAG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? 
covale ? covale4 B ND2 ASN 59 B ASN 59 1_555 K C1 NAG . B NAG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.453 ? 
covale ? covale5 B OG SER 200 B SER 200 1_555 M P01 ELT . B ELT 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.654 ? 
covale ? covale6 B ND2 ASN 416 B ASN 416 1_555 L C1 NAG . B NAG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.517 ? 
#
_chem_comp.formula           'C23 H25 Cl N4 O2' 
_chem_comp.formula_weight    424.923 
_chem_comp.id                JDS 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              6-[4-[(7-chloranyl-1,2,3,4-tetrahydroacridin-9-yl)amino]butyl]-2-[(~{Z})-hydroxyiminomethyl]pyridin-3-ol 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C15 C14 JDS sing 193 n n 
C15 C16 JDS sing 194 n n 
C14 N02 JDS sing 195 n n 
N02 C09 JDS sing 196 n n 
C16 C17 JDS sing 197 n n 
CL1 C12 JDS sing 198 n n 
C17 C18 JDS sing 199 n n 
C09 C08 JDS doub 200 n y 
C09 C06 JDS sing 201 n y 
C13 C08 JDS sing 202 n y 
C13 C12 JDS doub 203 n y 
C05 C06 JDS sing 204 n n 
C05 C04 JDS sing 205 n n 
C08 C07 JDS sing 206 n y 
C12 C11 JDS sing 207 n y 
C06 C01 JDS doub 208 n y 
C04 C03 JDS sing 209 n n 
C18 N03 JDS doub 210 n y 
C18 C19 JDS sing 211 n y 
N03 C22 JDS sing 212 n y 
C07 C10 JDS sing 213 n y 
C07 N01 JDS doub 214 n y 
C11 C10 JDS doub 215 n y 
C01 N01 JDS sing 216 n y 
C01 C02 JDS sing 217 n n 
C03 C02 JDS sing 218 n n 
C19 C20 JDS doub 219 n y 
C22 C23 JDS sing 220 n n 
C22 C21 JDS doub 221 n y 
C23 N04 JDS doub 222 z n 
C20 C21 JDS sing 223 n y 
N04 O01 JDS sing 224 n n 
C21 O02 JDS sing 225 n n 
O01 H1 JDS sing 226 n n 
C02 H2 JDS sing 227 n n 
C02 H3 JDS sing 228 n n 
N02 H4 JDS sing 229 n n 
O02 H5 JDS sing 230 n n 
C03 H6 JDS sing 231 n n 
C03 H7 JDS sing 232 n n 
C04 H8 JDS sing 233 n n 
C04 H9 JDS sing 234 n n 
C05 H10 JDS sing 235 n n 
C05 H11 JDS sing 236 n n 
C10 H12 JDS sing 237 n n 
C11 H13 JDS sing 238 n n 
C13 H14 JDS sing 239 n n 
C14 H15 JDS sing 240 n n 
C14 H16 JDS sing 241 n n 
C15 H17 JDS sing 242 n n 
C15 H18 JDS sing 243 n n 
C16 H19 JDS sing 244 n n 
C16 H20 JDS sing 245 n n 
C17 H21 JDS sing 246 n n 
C17 H22 JDS sing 247 n n 
C19 H23 JDS sing 248 n n 
C20 H24 JDS sing 249 n n 
C23 H25 JDS sing 250 n n 
#
_atom_sites.entry_id                     6G4P 
_atom_sites.fract_transf_matrix[1][1]    0.010928 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009384 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006658 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 NAG A 1 601 560 NAG NAG . 
D 2 NAG A 1 602 561 NAG NAG . 
E 3 ELT A 1 603 550 ELT TBN . 
F 4 JDS A 1 604 551 JDS JDS . 
G 5 CL A 1 605 1 CL CL . 
H 5 CL A 1 606 5 CL CL . 
I 5 CL A 1 607 8 CL CL . 
J 6 PG4 A 1 608 2 PG4 PG4 . 
K 2 NAG B 1 601 560 NAG NAG . 
L 2 NAG B 1 602 561 NAG NAG . 
M 3 ELT B 1 603 550 ELT TBN . 
N 4 JDS B 1 604 551 JDS JDS . 
O 5 CL B 1 605 2 CL CL . 
P 5 CL B 1 606 3 CL CL . 
Q 5 CL B 1 607 4 CL CL . 
R 5 CL B 1 608 6 CL CL . 
S 5 CL B 1 609 7 CL CL . 
T 6 PG4 B 1 610 1 PG4 PG4 . 
U 7 HOH A 1 701 38 HOH HOH . 
U 7 HOH A 2 702 26 HOH HOH . 
U 7 HOH A 3 703 51 HOH HOH . 
U 7 HOH A 4 704 27 HOH HOH . 
U 7 HOH A 5 705 36 HOH HOH . 
U 7 HOH A 6 706 8 HOH HOH . 
U 7 HOH A 7 707 35 HOH HOH . 
U 7 HOH A 8 708 37 HOH HOH . 
U 7 HOH A 9 709 10 HOH HOH . 
U 7 HOH A 10 710 11 HOH HOH . 
U 7 HOH A 11 711 34 HOH HOH . 
U 7 HOH A 12 712 29 HOH HOH . 
U 7 HOH A 13 713 39 HOH HOH . 
U 7 HOH A 14 714 50 HOH HOH . 
U 7 HOH A 15 715 49 HOH HOH . 
U 7 HOH A 16 716 46 HOH HOH . 
U 7 HOH A 17 717 32 HOH HOH . 
U 7 HOH A 18 718 12 HOH HOH . 
U 7 HOH A 19 719 9 HOH HOH . 
U 7 HOH A 20 720 33 HOH HOH . 
U 7 HOH A 21 721 25 HOH HOH . 
U 7 HOH A 22 722 24 HOH HOH . 
U 7 HOH A 23 723 52 HOH HOH . 
U 7 HOH A 24 724 53 HOH HOH . 
U 7 HOH A 25 725 31 HOH HOH . 
U 7 HOH A 26 726 28 HOH HOH . 
U 7 HOH A 27 727 14 HOH HOH . 
U 7 HOH A 28 728 57 HOH HOH . 
U 7 HOH A 29 729 13 HOH HOH . 
U 7 HOH A 30 730 30 HOH HOH . 
V 7 HOH B 1 701 7 HOH HOH . 
V 7 HOH B 2 702 47 HOH HOH . 
V 7 HOH B 3 703 20 HOH HOH . 
V 7 HOH B 4 704 23 HOH HOH . 
V 7 HOH B 5 705 48 HOH HOH . 
V 7 HOH B 6 706 22 HOH HOH . 
V 7 HOH B 7 707 56 HOH HOH . 
V 7 HOH B 8 708 44 HOH HOH . 
V 7 HOH B 9 709 6 HOH HOH . 
V 7 HOH B 10 710 21 HOH HOH . 
V 7 HOH B 11 711 45 HOH HOH . 
V 7 HOH B 12 712 15 HOH HOH . 
V 7 HOH B 13 713 16 HOH HOH . 
V 7 HOH B 14 714 19 HOH HOH . 
V 7 HOH B 15 715 55 HOH HOH . 
V 7 HOH B 16 716 4 HOH HOH . 
V 7 HOH B 17 717 42 HOH HOH . 
V 7 HOH B 18 718 5 HOH HOH . 
V 7 HOH B 19 719 40 HOH HOH . 
V 7 HOH B 20 720 3 HOH HOH . 
V 7 HOH B 21 721 18 HOH HOH . 
V 7 HOH B 22 722 54 HOH HOH . 
V 7 HOH B 23 723 17 HOH HOH . 
V 7 HOH B 24 724 41 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 CL CL1 JDS . . . N 4 12.905 8.112 -5.045 1 78.5 ? CL1 JDS 604 B 1 
HETATM 2 C C01 JDS . . . N 4 8.73 2.933 -5.39 1 46.03 ? C01 JDS 604 B 1 
HETATM 3 N N01 JDS . . . N 4 8.927 3.84 -4.431 1 41.78 ? N01 JDS 604 B 1 
HETATM 4 O O01 JDS . . . N 4 9.627 0.777 -2.161 1 75.96 ? O01 JDS 604 B 1 
HETATM 5 C C02 JDS . . . N 4 7.796 1.773 -5.029 1 46.76 ? C02 JDS 604 B 1 
HETATM 6 N N02 JDS . . . N 4 11.265 4.006 -7.988 1 60.8 ? N02 JDS 604 B 1 
HETATM 7 O O02 JDS . . . N 4 12.462 4.462 -2.091 1 89.74 ? O02 JDS 604 B 1 
HETATM 8 C C03 JDS . . . N 4 7.585 0.715 -6.109 1 44.11 ? C03 JDS 604 B 1 
HETATM 9 N N03 JDS . . . N 4 12.788 1.982 -4.721 1 67.3 ? N03 JDS 604 B 1 
HETATM 10 C C04 JDS . . . N 4 8.902 0.397 -6.773 1 43.15 ? C04 JDS 604 B 1 
HETATM 11 N N04 JDS . . . N 4 10.617 1.015 -3.014 1 68.99 ? N04 JDS 604 B 1 
HETATM 12 C C05 JDS . . . N 4 9.419 1.662 -7.434 1 38.33 ? C05 JDS 604 B 1 
HETATM 13 C C06 JDS . . . N 4 9.622 2.821 -6.534 1 44.53 ? C06 JDS 604 B 1 
HETATM 14 C C07 JDS . . . N 4 9.904 4.802 -4.65 1 50.62 ? C07 JDS 604 B 1 
HETATM 15 C C08 JDS . . . N 4 10.758 4.812 -5.759 1 54.9 ? C08 JDS 604 B 1 
HETATM 16 C C09 JDS . . . N 4 10.645 3.763 -6.732 1 52.23 ? C09 JDS 604 B 1 
HETATM 17 C C10 JDS . . . N 4 10.03 5.857 -3.702 1 51.72 ? C10 JDS 604 B 1 
HETATM 18 C C11 JDS . . . N 4 10.943 6.845 -3.823 1 56.11 ? C11 JDS 604 B 1 
HETATM 19 C C12 JDS . . . N 4 11.78 6.838 -4.915 1 67.22 ? C12 JDS 604 B 1 
HETATM 20 C C13 JDS . . . N 4 11.715 5.851 -5.885 1 64.9 ? C13 JDS 604 B 1 
HETATM 21 C C14 JDS . . . N 4 12.439 3.333 -8.6 1 56.28 ? C14 JDS 604 B 1 
HETATM 22 C C15 JDS . . . N 4 13.819 3.832 -8.212 1 51.74 ? C15 JDS 604 B 1 
HETATM 23 C C16 JDS . . . N 4 14.766 2.66 -7.823 1 60.15 ? C16 JDS 604 B 1 
HETATM 24 C C17 JDS . . . N 4 14.383 1.77 -6.624 1 62.14 ? C17 JDS 604 B 1 
HETATM 25 C C18 JDS . . . N 4 13.862 2.484 -5.399 1 69.05 ? C18 JDS 604 B 1 
HETATM 26 C C19 JDS . . . N 4 14.499 3.671 -4.992 1 74.31 ? C19 JDS 604 B 1 
HETATM 27 C C20 JDS . . . N 4 14.053 4.365 -3.884 1 79.49 ? C20 JDS 604 B 1 
HETATM 28 C C21 JDS . . . N 4 12.972 3.857 -3.197 1 82.51 ? C21 JDS 604 B 1 
HETATM 29 C C22 JDS . . . N 4 12.354 2.665 -3.642 1 72.7 ? C22 JDS 604 B 1 
HETATM 30 C C23 JDS . . . N 4 11.228 2.142 -2.889 1 69.28 ? C23 JDS 604 B 1 
#
_model_server_stats.io_time_ms              25 
_model_server_stats.parse_time_ms           26 
_model_server_stats.create_model_time_ms    18 
_model_server_stats.query_time_ms           312 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           30 
#