data_6G59 # _model_server_result.job_id nPUeZ9J4DirzOdYvZimeQw _model_server_result.datetime_utc '2024-11-01 00:40:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6g59 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":406}' # _entry.id 6G59 # _exptl.entry_id 6G59 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6G59 _cell.length_a 85.924 _cell.length_b 106.855 _cell.length_c 131.023 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6G59 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 H N N ? 4 I N N ? 4 J N N ? 4 O N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NZ LYS 61 A LYS 39 1_555 C C4A EM2 . A EM2 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.48 ? covale ? covale2 B NZ LYS 61 B LYS 39 1_555 L C4A EM2 . B EM2 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.479 ? metalc ? metalc1 A O ILE 176 A ILE 154 1_555 H NA NA . A NA 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.796 ? metalc ? metalc2 A O TYR 179 A TYR 157 1_555 H NA NA . A NA 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.883 ? metalc ? metalc3 A O LEU 182 A LEU 160 1_555 H NA NA . A NA 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.515 ? metalc ? metalc4 A OH TYR 249 A TYR 227 1_555 I NA NA . A NA 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.788 ? metalc ? metalc5 A O VAL 267 A VAL 245 1_555 I NA NA . A NA 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.624 ? metalc ? metalc6 A O SER 286 A SER 264 1_555 J NA NA . A NA 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.901 ? metalc ? metalc7 A O ASP 355 A ASP 333 1_555 I NA NA . A NA 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.758 ? metalc ? metalc8 I NA NA . A NA 407 1_555 Q O HOH . A HOH 574 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.998 ? metalc ? metalc9 B O ILE 176 B ILE 154 1_555 O NA NA . B NA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.779 ? metalc ? metalc10 B O TYR 179 B TYR 157 1_555 O NA NA . B NA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.692 ? metalc ? metalc11 B O LEU 182 B LEU 160 1_555 O NA NA . B NA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.411 ? metalc ? metalc12 O NA NA . B NA 404 1_555 R O HOH . B HOH 547 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.335 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6G59 _atom_sites.fract_transf_matrix[1][1] 0.011638 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009358 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007632 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 EM2 A 1 401 400 EM2 PLP . D 3 SO4 A 1 402 1 SO4 SO4 . E 3 SO4 A 1 403 2 SO4 SO4 . F 3 SO4 A 1 404 3 SO4 SO4 . G 3 SO4 A 1 405 5 SO4 SO4 . H 4 NA A 1 406 1 NA NA . I 4 NA A 1 407 2 NA NA . J 4 NA A 1 408 3 NA NA . K 5 CL A 1 409 1 CL CL . L 2 EM2 B 1 401 400 EM2 PLP . M 3 SO4 B 1 402 4 SO4 SO4 . N 3 SO4 B 1 403 6 SO4 SO4 . O 4 NA B 1 404 4 NA NA . P 5 CL B 1 405 2 CL CL . Q 6 HOH A 1 501 135 HOH HOH . Q 6 HOH A 2 502 176 HOH HOH . Q 6 HOH A 3 503 38 HOH HOH . Q 6 HOH A 4 504 104 HOH HOH . Q 6 HOH A 5 505 122 HOH HOH . Q 6 HOH A 6 506 1 HOH HOH . Q 6 HOH A 7 507 132 HOH HOH . Q 6 HOH A 8 508 130 HOH HOH . Q 6 HOH A 9 509 22 HOH HOH . Q 6 HOH A 10 510 102 HOH HOH . Q 6 HOH A 11 511 82 HOH HOH . Q 6 HOH A 12 512 3 HOH HOH . Q 6 HOH A 13 513 148 HOH HOH . Q 6 HOH A 14 514 133 HOH HOH . Q 6 HOH A 15 515 81 HOH HOH . Q 6 HOH A 16 516 87 HOH HOH . Q 6 HOH A 17 517 128 HOH HOH . Q 6 HOH A 18 518 121 HOH HOH . Q 6 HOH A 19 519 149 HOH HOH . Q 6 HOH A 20 520 68 HOH HOH . Q 6 HOH A 21 521 80 HOH HOH . Q 6 HOH A 22 522 129 HOH HOH . Q 6 HOH A 23 523 147 HOH HOH . Q 6 HOH A 24 524 6 HOH HOH . Q 6 HOH A 25 525 5 HOH HOH . Q 6 HOH A 26 526 116 HOH HOH . Q 6 HOH A 27 527 115 HOH HOH . Q 6 HOH A 28 528 56 HOH HOH . Q 6 HOH A 29 529 141 HOH HOH . Q 6 HOH A 30 530 94 HOH HOH . Q 6 HOH A 31 531 17 HOH HOH . Q 6 HOH A 32 532 158 HOH HOH . Q 6 HOH A 33 533 4 HOH HOH . Q 6 HOH A 34 534 110 HOH HOH . Q 6 HOH A 35 535 53 HOH HOH . Q 6 HOH A 36 536 93 HOH HOH . Q 6 HOH A 37 537 84 HOH HOH . Q 6 HOH A 38 538 23 HOH HOH . Q 6 HOH A 39 539 66 HOH HOH . Q 6 HOH A 40 540 138 HOH HOH . Q 6 HOH A 41 541 24 HOH HOH . Q 6 HOH A 42 542 28 HOH HOH . Q 6 HOH A 43 543 83 HOH HOH . Q 6 HOH A 44 544 119 HOH HOH . Q 6 HOH A 45 545 161 HOH HOH . Q 6 HOH A 46 546 95 HOH HOH . Q 6 HOH A 47 547 124 HOH HOH . Q 6 HOH A 48 548 18 HOH HOH . Q 6 HOH A 49 549 33 HOH HOH . Q 6 HOH A 50 550 131 HOH HOH . Q 6 HOH A 51 551 99 HOH HOH . Q 6 HOH A 52 552 103 HOH HOH . Q 6 HOH A 53 553 57 HOH HOH . Q 6 HOH A 54 554 120 HOH HOH . Q 6 HOH A 55 555 97 HOH HOH . Q 6 HOH A 56 556 105 HOH HOH . Q 6 HOH A 57 557 178 HOH HOH . Q 6 HOH A 58 558 60 HOH HOH . Q 6 HOH A 59 559 98 HOH HOH . Q 6 HOH A 60 560 77 HOH HOH . Q 6 HOH A 61 561 126 HOH HOH . Q 6 HOH A 62 562 12 HOH HOH . Q 6 HOH A 63 563 85 HOH HOH . Q 6 HOH A 64 564 19 HOH HOH . Q 6 HOH A 65 565 108 HOH HOH . Q 6 HOH A 66 566 9 HOH HOH . Q 6 HOH A 67 567 2 HOH HOH . Q 6 HOH A 68 568 21 HOH HOH . Q 6 HOH A 69 569 54 HOH HOH . Q 6 HOH A 70 570 127 HOH HOH . Q 6 HOH A 71 571 134 HOH HOH . Q 6 HOH A 72 572 123 HOH HOH . Q 6 HOH A 73 573 137 HOH HOH . Q 6 HOH A 74 574 136 HOH HOH . Q 6 HOH A 75 575 29 HOH HOH . Q 6 HOH A 76 576 92 HOH HOH . Q 6 HOH A 77 577 100 HOH HOH . Q 6 HOH A 78 578 152 HOH HOH . Q 6 HOH A 79 579 13 HOH HOH . Q 6 HOH A 80 580 109 HOH HOH . Q 6 HOH A 81 581 63 HOH HOH . Q 6 HOH A 82 582 101 HOH HOH . Q 6 HOH A 83 583 96 HOH HOH . Q 6 HOH A 84 584 146 HOH HOH . Q 6 HOH A 85 585 55 HOH HOH . Q 6 HOH A 86 586 139 HOH HOH . R 6 HOH B 1 501 79 HOH HOH . R 6 HOH B 2 502 48 HOH HOH . R 6 HOH B 3 503 163 HOH HOH . R 6 HOH B 4 504 112 HOH HOH . R 6 HOH B 5 505 46 HOH HOH . R 6 HOH B 6 506 67 HOH HOH . R 6 HOH B 7 507 155 HOH HOH . R 6 HOH B 8 508 74 HOH HOH . R 6 HOH B 9 509 69 HOH HOH . R 6 HOH B 10 510 113 HOH HOH . R 6 HOH B 11 511 174 HOH HOH . R 6 HOH B 12 512 43 HOH HOH . R 6 HOH B 13 513 154 HOH HOH . R 6 HOH B 14 514 142 HOH HOH . R 6 HOH B 15 515 72 HOH HOH . R 6 HOH B 16 516 90 HOH HOH . R 6 HOH B 17 517 117 HOH HOH . R 6 HOH B 18 518 7 HOH HOH . R 6 HOH B 19 519 26 HOH HOH . R 6 HOH B 20 520 47 HOH HOH . R 6 HOH B 21 521 173 HOH HOH . R 6 HOH B 22 522 70 HOH HOH . R 6 HOH B 23 523 59 HOH HOH . R 6 HOH B 24 524 40 HOH HOH . R 6 HOH B 25 525 73 HOH HOH . R 6 HOH B 26 526 64 HOH HOH . R 6 HOH B 27 527 52 HOH HOH . R 6 HOH B 28 528 50 HOH HOH . R 6 HOH B 29 529 162 HOH HOH . R 6 HOH B 30 530 27 HOH HOH . R 6 HOH B 31 531 51 HOH HOH . R 6 HOH B 32 532 89 HOH HOH . R 6 HOH B 33 533 165 HOH HOH . R 6 HOH B 34 534 168 HOH HOH . R 6 HOH B 35 535 16 HOH HOH . R 6 HOH B 36 536 44 HOH HOH . R 6 HOH B 37 537 61 HOH HOH . R 6 HOH B 38 538 31 HOH HOH . R 6 HOH B 39 539 91 HOH HOH . R 6 HOH B 40 540 175 HOH HOH . R 6 HOH B 41 541 107 HOH HOH . R 6 HOH B 42 542 114 HOH HOH . R 6 HOH B 43 543 71 HOH HOH . R 6 HOH B 44 544 58 HOH HOH . R 6 HOH B 45 545 88 HOH HOH . R 6 HOH B 46 546 172 HOH HOH . R 6 HOH B 47 547 167 HOH HOH . R 6 HOH B 48 548 166 HOH HOH . R 6 HOH B 49 549 41 HOH HOH . R 6 HOH B 50 550 140 HOH HOH . R 6 HOH B 51 551 151 HOH HOH . R 6 HOH B 52 552 159 HOH HOH . R 6 HOH B 53 553 62 HOH HOH . R 6 HOH B 54 554 14 HOH HOH . R 6 HOH B 55 555 171 HOH HOH . R 6 HOH B 56 556 65 HOH HOH . R 6 HOH B 57 557 32 HOH HOH . R 6 HOH B 58 558 36 HOH HOH . R 6 HOH B 59 559 39 HOH HOH . R 6 HOH B 60 560 143 HOH HOH . R 6 HOH B 61 561 150 HOH HOH . R 6 HOH B 62 562 156 HOH HOH . R 6 HOH B 63 563 86 HOH HOH . R 6 HOH B 64 564 160 HOH HOH . R 6 HOH B 65 565 157 HOH HOH . R 6 HOH B 66 566 164 HOH HOH . R 6 HOH B 67 567 78 HOH HOH . R 6 HOH B 68 568 49 HOH HOH . R 6 HOH B 69 569 30 HOH HOH . R 6 HOH B 70 570 170 HOH HOH . R 6 HOH B 71 571 45 HOH HOH . R 6 HOH B 72 572 153 HOH HOH . R 6 HOH B 73 573 169 HOH HOH . R 6 HOH B 74 574 118 HOH HOH . R 6 HOH B 75 575 8 HOH HOH . R 6 HOH B 76 576 144 HOH HOH . R 6 HOH B 77 577 177 HOH HOH . R 6 HOH B 78 578 34 HOH HOH . R 6 HOH B 79 579 76 HOH HOH . R 6 HOH B 80 580 75 HOH HOH . R 6 HOH B 81 581 125 HOH HOH . R 6 HOH B 82 582 25 HOH HOH . R 6 HOH B 83 583 37 HOH HOH . R 6 HOH B 84 584 145 HOH HOH . R 6 HOH B 85 585 111 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id H _atom_site.label_entity_id 4 _atom_site.Cartn_x -19.363 _atom_site.Cartn_y -0.577 _atom_site.Cartn_z 23.473 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 47.92 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 406 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 344 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #