data_6G5F # _model_server_result.job_id FYjn1OSPAEq_vZIO2O9avg _model_server_result.datetime_utc '2024-12-26 19:33:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6g5f # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":1303}' # _entry.id 6G5F # _exptl.entry_id 6G5F _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6G5F _cell.length_a 176.078 _cell.length_b 356.419 _cell.length_c 103.939 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6G5F _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 F N N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 437 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 437 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 446 _struct_conn.ptnr2_auth_asym_id B _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 446 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.069 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 6G5F _atom_sites.fract_transf_matrix[1][1] 0.005679 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.002806 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009621 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 GOL A 1 1301 1 GOL GOL . E 3 GOL A 1 1302 2 GOL GOL . F 3 GOL A 1 1303 3 GOL GOL . G 4 MLI B 1 1301 1 MLI MLI . H 5 HOH A 1 1401 142 HOH HOH . H 5 HOH A 2 1402 67 HOH HOH . H 5 HOH A 3 1403 25 HOH HOH . H 5 HOH A 4 1404 321 HOH HOH . H 5 HOH A 5 1405 323 HOH HOH . H 5 HOH A 6 1406 191 HOH HOH . H 5 HOH A 7 1407 40 HOH HOH . H 5 HOH A 8 1408 90 HOH HOH . H 5 HOH A 9 1409 364 HOH HOH . H 5 HOH A 10 1410 103 HOH HOH . H 5 HOH A 11 1411 160 HOH HOH . H 5 HOH A 12 1412 309 HOH HOH . H 5 HOH A 13 1413 26 HOH HOH . H 5 HOH A 14 1414 105 HOH HOH . H 5 HOH A 15 1415 57 HOH HOH . H 5 HOH A 16 1416 75 HOH HOH . H 5 HOH A 17 1417 37 HOH HOH . H 5 HOH A 18 1418 336 HOH HOH . H 5 HOH A 19 1419 344 HOH HOH . H 5 HOH A 20 1420 238 HOH HOH . H 5 HOH A 21 1421 114 HOH HOH . H 5 HOH A 22 1422 96 HOH HOH . H 5 HOH A 23 1423 233 HOH HOH . H 5 HOH A 24 1424 17 HOH HOH . H 5 HOH A 25 1425 41 HOH HOH . H 5 HOH A 26 1426 58 HOH HOH . H 5 HOH A 27 1427 104 HOH HOH . H 5 HOH A 28 1428 173 HOH HOH . H 5 HOH A 29 1429 2 HOH HOH . H 5 HOH A 30 1430 3 HOH HOH . H 5 HOH A 31 1431 20 HOH HOH . H 5 HOH A 32 1432 94 HOH HOH . H 5 HOH A 33 1433 360 HOH HOH . H 5 HOH A 34 1434 106 HOH HOH . H 5 HOH A 35 1435 240 HOH HOH . H 5 HOH A 36 1436 23 HOH HOH . H 5 HOH A 37 1437 249 HOH HOH . H 5 HOH A 38 1438 348 HOH HOH . H 5 HOH A 39 1439 108 HOH HOH . H 5 HOH A 40 1440 65 HOH HOH . H 5 HOH A 41 1441 119 HOH HOH . H 5 HOH A 42 1442 317 HOH HOH . H 5 HOH A 43 1443 42 HOH HOH . H 5 HOH A 44 1444 113 HOH HOH . H 5 HOH A 45 1445 38 HOH HOH . H 5 HOH A 46 1446 328 HOH HOH . H 5 HOH A 47 1447 10 HOH HOH . H 5 HOH A 48 1448 80 HOH HOH . H 5 HOH A 49 1449 1 HOH HOH . H 5 HOH A 50 1450 164 HOH HOH . H 5 HOH A 51 1451 193 HOH HOH . H 5 HOH A 52 1452 157 HOH HOH . H 5 HOH A 53 1453 224 HOH HOH . H 5 HOH A 54 1454 399 HOH HOH . H 5 HOH A 55 1455 186 HOH HOH . H 5 HOH A 56 1456 393 HOH HOH . H 5 HOH A 57 1457 183 HOH HOH . H 5 HOH A 58 1458 101 HOH HOH . H 5 HOH A 59 1459 32 HOH HOH . H 5 HOH A 60 1460 231 HOH HOH . H 5 HOH A 61 1461 83 HOH HOH . H 5 HOH A 62 1462 352 HOH HOH . H 5 HOH A 63 1463 54 HOH HOH . H 5 HOH A 64 1464 278 HOH HOH . H 5 HOH A 65 1465 307 HOH HOH . H 5 HOH A 66 1466 394 HOH HOH . H 5 HOH A 67 1467 45 HOH HOH . H 5 HOH A 68 1468 22 HOH HOH . H 5 HOH A 69 1469 73 HOH HOH . H 5 HOH A 70 1470 366 HOH HOH . H 5 HOH A 71 1471 35 HOH HOH . H 5 HOH A 72 1472 207 HOH HOH . H 5 HOH A 73 1473 305 HOH HOH . H 5 HOH A 74 1474 396 HOH HOH . H 5 HOH A 75 1475 329 HOH HOH . H 5 HOH A 76 1476 131 HOH HOH . H 5 HOH A 77 1477 74 HOH HOH . H 5 HOH A 78 1478 390 HOH HOH . H 5 HOH A 79 1479 107 HOH HOH . H 5 HOH A 80 1480 277 HOH HOH . H 5 HOH A 81 1481 24 HOH HOH . H 5 HOH A 82 1482 335 HOH HOH . H 5 HOH A 83 1483 320 HOH HOH . H 5 HOH A 84 1484 367 HOH HOH . H 5 HOH A 85 1485 146 HOH HOH . H 5 HOH A 86 1486 279 HOH HOH . H 5 HOH A 87 1487 365 HOH HOH . H 5 HOH A 88 1488 112 HOH HOH . H 5 HOH A 89 1489 60 HOH HOH . H 5 HOH A 90 1490 144 HOH HOH . H 5 HOH A 91 1491 368 HOH HOH . H 5 HOH A 92 1492 331 HOH HOH . H 5 HOH A 93 1493 272 HOH HOH . H 5 HOH A 94 1494 39 HOH HOH . H 5 HOH A 95 1495 221 HOH HOH . H 5 HOH A 96 1496 63 HOH HOH . H 5 HOH A 97 1497 346 HOH HOH . H 5 HOH A 98 1498 314 HOH HOH . H 5 HOH A 99 1499 79 HOH HOH . H 5 HOH A 100 1500 303 HOH HOH . H 5 HOH A 101 1501 154 HOH HOH . H 5 HOH A 102 1502 7 HOH HOH . H 5 HOH A 103 1503 204 HOH HOH . H 5 HOH A 104 1504 49 HOH HOH . H 5 HOH A 105 1505 318 HOH HOH . H 5 HOH A 106 1506 30 HOH HOH . H 5 HOH A 107 1507 234 HOH HOH . H 5 HOH A 108 1508 138 HOH HOH . H 5 HOH A 109 1509 397 HOH HOH . H 5 HOH A 110 1510 316 HOH HOH . H 5 HOH A 111 1511 69 HOH HOH . H 5 HOH A 112 1512 356 HOH HOH . H 5 HOH A 113 1513 370 HOH HOH . H 5 HOH A 114 1514 59 HOH HOH . H 5 HOH A 115 1515 315 HOH HOH . H 5 HOH A 116 1516 50 HOH HOH . H 5 HOH A 117 1517 302 HOH HOH . H 5 HOH A 118 1518 140 HOH HOH . H 5 HOH A 119 1519 295 HOH HOH . H 5 HOH A 120 1520 189 HOH HOH . H 5 HOH A 121 1521 55 HOH HOH . H 5 HOH A 122 1522 327 HOH HOH . H 5 HOH A 123 1523 371 HOH HOH . H 5 HOH A 124 1524 310 HOH HOH . H 5 HOH A 125 1525 389 HOH HOH . H 5 HOH A 126 1526 355 HOH HOH . H 5 HOH A 127 1527 333 HOH HOH . H 5 HOH A 128 1528 334 HOH HOH . H 5 HOH A 129 1529 97 HOH HOH . H 5 HOH A 130 1530 184 HOH HOH . H 5 HOH A 131 1531 380 HOH HOH . H 5 HOH A 132 1532 211 HOH HOH . H 5 HOH A 133 1533 246 HOH HOH . H 5 HOH A 134 1534 311 HOH HOH . H 5 HOH A 135 1535 354 HOH HOH . H 5 HOH A 136 1536 392 HOH HOH . H 5 HOH A 137 1537 362 HOH HOH . H 5 HOH A 138 1538 330 HOH HOH . H 5 HOH A 139 1539 345 HOH HOH . H 5 HOH A 140 1540 324 HOH HOH . H 5 HOH A 141 1541 402 HOH HOH . H 5 HOH A 142 1542 332 HOH HOH . H 5 HOH A 143 1543 391 HOH HOH . H 5 HOH A 144 1544 363 HOH HOH . H 5 HOH A 145 1545 319 HOH HOH . H 5 HOH A 146 1546 369 HOH HOH . H 5 HOH A 147 1547 61 HOH HOH . H 5 HOH A 148 1548 31 HOH HOH . H 5 HOH A 149 1549 259 HOH HOH . H 5 HOH A 150 1550 353 HOH HOH . H 5 HOH A 151 1551 388 HOH HOH . H 5 HOH A 152 1552 87 HOH HOH . H 5 HOH A 153 1553 99 HOH HOH . I 5 HOH B 1 1401 411 HOH HOH . I 5 HOH B 2 1402 322 HOH HOH . I 5 HOH B 3 1403 11 HOH HOH . I 5 HOH B 4 1404 52 HOH HOH . I 5 HOH B 5 1405 171 HOH HOH . I 5 HOH B 6 1406 304 HOH HOH . I 5 HOH B 7 1407 357 HOH HOH . I 5 HOH B 8 1408 190 HOH HOH . I 5 HOH B 9 1409 27 HOH HOH . I 5 HOH B 10 1410 313 HOH HOH . I 5 HOH B 11 1411 379 HOH HOH . I 5 HOH B 12 1412 247 HOH HOH . I 5 HOH B 13 1413 21 HOH HOH . I 5 HOH B 14 1414 48 HOH HOH . I 5 HOH B 15 1415 100 HOH HOH . I 5 HOH B 16 1416 19 HOH HOH . I 5 HOH B 17 1417 168 HOH HOH . I 5 HOH B 18 1418 33 HOH HOH . I 5 HOH B 19 1419 196 HOH HOH . I 5 HOH B 20 1420 341 HOH HOH . I 5 HOH B 21 1421 102 HOH HOH . I 5 HOH B 22 1422 127 HOH HOH . I 5 HOH B 23 1423 135 HOH HOH . I 5 HOH B 24 1424 92 HOH HOH . I 5 HOH B 25 1425 159 HOH HOH . I 5 HOH B 26 1426 195 HOH HOH . I 5 HOH B 27 1427 401 HOH HOH . I 5 HOH B 28 1428 406 HOH HOH . I 5 HOH B 29 1429 260 HOH HOH . I 5 HOH B 30 1430 308 HOH HOH . I 5 HOH B 31 1431 14 HOH HOH . I 5 HOH B 32 1432 300 HOH HOH . I 5 HOH B 33 1433 12 HOH HOH . I 5 HOH B 34 1434 412 HOH HOH . I 5 HOH B 35 1435 218 HOH HOH . I 5 HOH B 36 1436 214 HOH HOH . I 5 HOH B 37 1437 239 HOH HOH . I 5 HOH B 38 1438 134 HOH HOH . I 5 HOH B 39 1439 51 HOH HOH . I 5 HOH B 40 1440 158 HOH HOH . I 5 HOH B 41 1441 339 HOH HOH . I 5 HOH B 42 1442 374 HOH HOH . I 5 HOH B 43 1443 387 HOH HOH . I 5 HOH B 44 1444 232 HOH HOH . I 5 HOH B 45 1445 299 HOH HOH . I 5 HOH B 46 1446 270 HOH HOH . I 5 HOH B 47 1447 88 HOH HOH . I 5 HOH B 48 1448 312 HOH HOH . I 5 HOH B 49 1449 250 HOH HOH . I 5 HOH B 50 1450 404 HOH HOH . I 5 HOH B 51 1451 66 HOH HOH . I 5 HOH B 52 1452 120 HOH HOH . I 5 HOH B 53 1453 82 HOH HOH . I 5 HOH B 54 1454 358 HOH HOH . I 5 HOH B 55 1455 407 HOH HOH . I 5 HOH B 56 1456 359 HOH HOH . I 5 HOH B 57 1457 385 HOH HOH . I 5 HOH B 58 1458 163 HOH HOH . I 5 HOH B 59 1459 337 HOH HOH . I 5 HOH B 60 1460 122 HOH HOH . I 5 HOH B 61 1461 263 HOH HOH . I 5 HOH B 62 1462 343 HOH HOH . I 5 HOH B 63 1463 64 HOH HOH . I 5 HOH B 64 1464 361 HOH HOH . I 5 HOH B 65 1465 229 HOH HOH . I 5 HOH B 66 1466 296 HOH HOH . I 5 HOH B 67 1467 273 HOH HOH . I 5 HOH B 68 1468 115 HOH HOH . I 5 HOH B 69 1469 347 HOH HOH . I 5 HOH B 70 1470 72 HOH HOH . I 5 HOH B 71 1471 400 HOH HOH . I 5 HOH B 72 1472 338 HOH HOH . I 5 HOH B 73 1473 395 HOH HOH . I 5 HOH B 74 1474 282 HOH HOH . I 5 HOH B 75 1475 301 HOH HOH . I 5 HOH B 76 1476 383 HOH HOH . I 5 HOH B 77 1477 378 HOH HOH . I 5 HOH B 78 1478 230 HOH HOH . I 5 HOH B 79 1479 76 HOH HOH . I 5 HOH B 80 1480 403 HOH HOH . I 5 HOH B 81 1481 150 HOH HOH . I 5 HOH B 82 1482 372 HOH HOH . I 5 HOH B 83 1483 382 HOH HOH . I 5 HOH B 84 1484 375 HOH HOH . I 5 HOH B 85 1485 212 HOH HOH . I 5 HOH B 86 1486 340 HOH HOH . I 5 HOH B 87 1487 84 HOH HOH . I 5 HOH B 88 1488 326 HOH HOH . I 5 HOH B 89 1489 373 HOH HOH . I 5 HOH B 90 1490 350 HOH HOH . I 5 HOH B 91 1491 398 HOH HOH . I 5 HOH B 92 1492 285 HOH HOH . I 5 HOH B 93 1493 43 HOH HOH . I 5 HOH B 94 1494 386 HOH HOH . I 5 HOH B 95 1495 384 HOH HOH . I 5 HOH B 96 1496 28 HOH HOH . I 5 HOH B 97 1497 409 HOH HOH . I 5 HOH B 98 1498 381 HOH HOH . I 5 HOH B 99 1499 376 HOH HOH . I 5 HOH B 100 1500 408 HOH HOH . I 5 HOH B 101 1501 298 HOH HOH . I 5 HOH B 102 1502 377 HOH HOH . I 5 HOH B 103 1503 36 HOH HOH . I 5 HOH B 104 1504 306 HOH HOH . I 5 HOH B 105 1505 349 HOH HOH . I 5 HOH B 106 1506 117 HOH HOH . I 5 HOH B 107 1507 126 HOH HOH . I 5 HOH B 108 1508 56 HOH HOH . I 5 HOH B 109 1509 405 HOH HOH . I 5 HOH B 110 1510 85 HOH HOH . I 5 HOH B 111 1511 410 HOH HOH . I 5 HOH B 112 1512 95 HOH HOH . I 5 HOH B 113 1513 325 HOH HOH . I 5 HOH B 114 1514 68 HOH HOH . I 5 HOH B 115 1515 297 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . F 3 84.63 16.836 -25.169 1 72.15 ? C1 GOL 1303 A 1 HETATM 2 O O1 GOL . . . F 3 84.384 17.481 -26.421 1 66.35 ? O1 GOL 1303 A 1 HETATM 3 C C2 GOL . . . F 3 86.005 17.181 -24.6 1 74.67 ? C2 GOL 1303 A 1 HETATM 4 O O2 GOL . . . F 3 85.853 17.9 -23.373 1 74.78 ? O2 GOL 1303 A 1 HETATM 5 C C3 GOL . . . F 3 86.81 15.918 -24.303 1 77.73 ? C3 GOL 1303 A 1 HETATM 6 O O3 GOL . . . F 3 87.013 15.119 -25.479 1 82.68 ? O3 GOL 1303 A 1 # _model_server_stats.io_time_ms 28 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #