data_6G5J # _model_server_result.job_id sLOP44daK5OOFzgJR0qFQw _model_server_result.datetime_utc '2024-11-08 14:11:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6g5j # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":204}' # _entry.id 6G5J # _exptl.entry_id 6G5J _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 106.12 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DI(HYDROXYETHYL)ETHER _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6G5J _cell.length_a 27.962 _cell.length_b 85.501 _cell.length_c 103.079 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6G5J _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,J 1 1 B,H,I,K 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 53 A CYS 11 1_555 A SG CYS 111 A CYS 69 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf2 A SG CYS 67 A CYS 25 1_555 A SG CYS 157 A CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? disulf ? disulf3 A SG CYS 69 A CYS 27 1_555 A SG CYS 85 A CYS 43 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf4 A SG CYS 84 A CYS 42 1_555 A SG CYS 139 A CYS 97 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? disulf ? disulf5 A SG CYS 90 A CYS 48 1_555 A SG CYS 164 A CYS 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf6 A SG CYS 91 A CYS 49 1_555 A SG CYS 132 A CYS 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf7 A SG CYS 100 A CYS 58 1_555 A SG CYS 125 A CYS 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf8 A SG CYS 118 A CYS 76 1_555 A SG CYS 130 A CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf9 B SG CYS 53 B CYS 11 1_555 B SG CYS 111 B CYS 69 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf10 B SG CYS 67 B CYS 25 1_555 B SG CYS 157 B CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? disulf ? disulf11 B SG CYS 69 B CYS 27 1_555 B SG CYS 85 B CYS 43 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? disulf ? disulf12 B SG CYS 84 B CYS 42 1_555 B SG CYS 139 B CYS 97 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? disulf ? disulf13 B SG CYS 90 B CYS 48 1_555 B SG CYS 164 B CYS 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? disulf ? disulf14 B SG CYS 91 B CYS 49 1_555 B SG CYS 132 B CYS 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf15 B SG CYS 100 B CYS 58 1_555 B SG CYS 125 B CYS 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf16 B SG CYS 118 B CYS 76 1_555 B SG CYS 130 B CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? metalc ? metalc1 A O PHE 68 A PHE 26 1_555 C CA CA . A CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? metalc ? metalc2 A O GLY 70 A GLY 28 1_555 C CA CA . A CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? metalc ? metalc3 A O GLY 72 A GLY 30 1_555 C CA CA . A CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.365 ? metalc ? metalc4 A OD1 ASP 89 A ASP 47 1_555 C CA CA . A CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.544 ? metalc ? metalc5 A OD2 ASP 89 A ASP 47 1_555 C CA CA . A CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.49 ? metalc ? metalc6 C CA CA . A CA 201 1_555 D O23 EM8 . A EM8 202 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.48 ? metalc ? metalc7 C CA CA . A CA 201 1_555 D O23 EM8 . A EM8 202 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.446 ? metalc ? metalc8 C CA CA . A CA 201 1_555 D O6 EM8 . A EM8 202 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.283 ? metalc ? metalc9 C CA CA . A CA 201 1_555 D O6 EM8 . A EM8 202 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.265 ? metalc ? metalc10 B O PHE 68 B PHE 26 1_555 H CA CA . B CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? metalc ? metalc11 B O GLY 70 B GLY 28 1_555 H CA CA . B CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.349 ? metalc ? metalc12 B O GLY 72 B GLY 30 1_555 H CA CA . B CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.351 ? metalc ? metalc13 B OD1 ASP 89 B ASP 47 1_555 H CA CA . B CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.541 ? metalc ? metalc14 B OD2 ASP 89 B ASP 47 1_555 H CA CA . B CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.401 ? metalc ? metalc15 H CA CA . B CA 201 1_555 I O6 EM8 . B EM8 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.238 ? metalc ? metalc16 H CA CA . B CA 201 1_555 I O23 EM8 . B EM8 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.492 ? # _chem_comp.formula 'C4 H10 O3' _chem_comp.formula_weight 106.12 _chem_comp.id PEG _chem_comp.mon_nstd_flag . _chem_comp.name DI(HYDROXYETHYL)ETHER _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PEG sing 294 n n C1 C2 PEG sing 295 n n C1 H11 PEG sing 296 n n C1 H12 PEG sing 297 n n O1 HO1 PEG sing 298 n n C2 O2 PEG sing 299 n n C2 H21 PEG sing 300 n n C2 H22 PEG sing 301 n n O2 C3 PEG sing 302 n n C3 C4 PEG sing 303 n n C3 H31 PEG sing 304 n n C3 H32 PEG sing 305 n n C4 O4 PEG sing 306 n n C4 H41 PEG sing 307 n n C4 H42 PEG sing 308 n n O4 HO4 PEG sing 309 n n # _atom_sites.entry_id 6G5J _atom_sites.fract_transf_matrix[1][1] 0.035763 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011696 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009701 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CA A 1 201 200 CA CA . D 3 EM8 A 1 202 1 EM8 INH . E 3 EM8 A 1 203 2 EM8 INH . F 4 PEG A 1 204 1 PEG PEG . G 5 DMS A 1 205 1 DMS DMS . H 2 CA B 1 201 200 CA CA . I 3 EM8 B 1 202 1 EM8 INH . J 6 HOH A 1 301 52 HOH HOH . J 6 HOH A 2 302 28 HOH HOH . J 6 HOH A 3 303 56 HOH HOH . J 6 HOH A 4 304 60 HOH HOH . J 6 HOH A 5 305 7 HOH HOH . J 6 HOH A 6 306 109 HOH HOH . J 6 HOH A 7 307 26 HOH HOH . J 6 HOH A 8 308 108 HOH HOH . J 6 HOH A 9 309 83 HOH HOH . J 6 HOH A 10 310 118 HOH HOH . J 6 HOH A 11 311 78 HOH HOH . J 6 HOH A 12 312 55 HOH HOH . J 6 HOH A 13 313 15 HOH HOH . J 6 HOH A 14 314 33 HOH HOH . J 6 HOH A 15 315 75 HOH HOH . J 6 HOH A 16 316 12 HOH HOH . J 6 HOH A 17 317 29 HOH HOH . J 6 HOH A 18 318 137 HOH HOH . J 6 HOH A 19 319 8 HOH HOH . J 6 HOH A 20 320 39 HOH HOH . J 6 HOH A 21 321 79 HOH HOH . J 6 HOH A 22 322 48 HOH HOH . J 6 HOH A 23 323 133 HOH HOH . J 6 HOH A 24 324 70 HOH HOH . J 6 HOH A 25 325 6 HOH HOH . J 6 HOH A 26 326 16 HOH HOH . J 6 HOH A 27 327 35 HOH HOH . J 6 HOH A 28 328 69 HOH HOH . J 6 HOH A 29 329 37 HOH HOH . J 6 HOH A 30 330 62 HOH HOH . J 6 HOH A 31 331 45 HOH HOH . J 6 HOH A 32 332 18 HOH HOH . J 6 HOH A 33 333 76 HOH HOH . J 6 HOH A 34 334 21 HOH HOH . J 6 HOH A 35 335 10 HOH HOH . J 6 HOH A 36 336 41 HOH HOH . J 6 HOH A 37 337 122 HOH HOH . J 6 HOH A 38 338 73 HOH HOH . J 6 HOH A 39 339 128 HOH HOH . J 6 HOH A 40 340 120 HOH HOH . J 6 HOH A 41 341 36 HOH HOH . J 6 HOH A 42 342 85 HOH HOH . J 6 HOH A 43 343 81 HOH HOH . J 6 HOH A 44 344 119 HOH HOH . J 6 HOH A 45 345 5 HOH HOH . J 6 HOH A 46 346 89 HOH HOH . J 6 HOH A 47 347 47 HOH HOH . J 6 HOH A 48 348 17 HOH HOH . J 6 HOH A 49 349 25 HOH HOH . J 6 HOH A 50 350 54 HOH HOH . J 6 HOH A 51 351 58 HOH HOH . J 6 HOH A 52 352 97 HOH HOH . J 6 HOH A 53 353 99 HOH HOH . J 6 HOH A 54 354 44 HOH HOH . J 6 HOH A 55 355 22 HOH HOH . J 6 HOH A 56 356 59 HOH HOH . J 6 HOH A 57 357 34 HOH HOH . J 6 HOH A 58 358 38 HOH HOH . J 6 HOH A 59 359 103 HOH HOH . J 6 HOH A 60 360 96 HOH HOH . J 6 HOH A 61 361 126 HOH HOH . J 6 HOH A 62 362 40 HOH HOH . J 6 HOH A 63 363 102 HOH HOH . J 6 HOH A 64 364 57 HOH HOH . J 6 HOH A 65 365 104 HOH HOH . J 6 HOH A 66 366 84 HOH HOH . J 6 HOH A 67 367 46 HOH HOH . J 6 HOH A 68 368 91 HOH HOH . J 6 HOH A 69 369 43 HOH HOH . J 6 HOH A 70 370 72 HOH HOH . J 6 HOH A 71 371 61 HOH HOH . K 6 HOH B 1 301 87 HOH HOH . K 6 HOH B 2 302 71 HOH HOH . K 6 HOH B 3 303 2 HOH HOH . K 6 HOH B 4 304 116 HOH HOH . K 6 HOH B 5 305 42 HOH HOH . K 6 HOH B 6 306 80 HOH HOH . K 6 HOH B 7 307 74 HOH HOH . K 6 HOH B 8 308 106 HOH HOH . K 6 HOH B 9 309 14 HOH HOH . K 6 HOH B 10 310 131 HOH HOH . K 6 HOH B 11 311 136 HOH HOH . K 6 HOH B 12 312 105 HOH HOH . K 6 HOH B 13 313 31 HOH HOH . K 6 HOH B 14 314 107 HOH HOH . K 6 HOH B 15 315 19 HOH HOH . K 6 HOH B 16 316 129 HOH HOH . K 6 HOH B 17 317 9 HOH HOH . K 6 HOH B 18 318 88 HOH HOH . K 6 HOH B 19 319 134 HOH HOH . K 6 HOH B 20 320 94 HOH HOH . K 6 HOH B 21 321 50 HOH HOH . K 6 HOH B 22 322 23 HOH HOH . K 6 HOH B 23 323 100 HOH HOH . K 6 HOH B 24 324 117 HOH HOH . K 6 HOH B 25 325 32 HOH HOH . K 6 HOH B 26 326 130 HOH HOH . K 6 HOH B 27 327 66 HOH HOH . K 6 HOH B 28 328 20 HOH HOH . K 6 HOH B 29 329 93 HOH HOH . K 6 HOH B 30 330 4 HOH HOH . K 6 HOH B 31 331 51 HOH HOH . K 6 HOH B 32 332 3 HOH HOH . K 6 HOH B 33 333 1 HOH HOH . K 6 HOH B 34 334 27 HOH HOH . K 6 HOH B 35 335 90 HOH HOH . K 6 HOH B 36 336 121 HOH HOH . K 6 HOH B 37 337 98 HOH HOH . K 6 HOH B 38 338 65 HOH HOH . K 6 HOH B 39 339 64 HOH HOH . K 6 HOH B 40 340 101 HOH HOH . K 6 HOH B 41 341 124 HOH HOH . K 6 HOH B 42 342 111 HOH HOH . K 6 HOH B 43 343 112 HOH HOH . K 6 HOH B 44 344 135 HOH HOH . K 6 HOH B 45 345 110 HOH HOH . K 6 HOH B 46 346 77 HOH HOH . K 6 HOH B 47 347 49 HOH HOH . K 6 HOH B 48 348 123 HOH HOH . K 6 HOH B 49 349 114 HOH HOH . K 6 HOH B 50 350 67 HOH HOH . K 6 HOH B 51 351 24 HOH HOH . K 6 HOH B 52 352 132 HOH HOH . K 6 HOH B 53 353 11 HOH HOH . K 6 HOH B 54 354 68 HOH HOH . K 6 HOH B 55 355 115 HOH HOH . K 6 HOH B 56 356 30 HOH HOH . K 6 HOH B 57 357 92 HOH HOH . K 6 HOH B 58 358 113 HOH HOH . K 6 HOH B 59 359 86 HOH HOH . K 6 HOH B 60 360 63 HOH HOH . K 6 HOH B 61 361 13 HOH HOH . K 6 HOH B 62 362 82 HOH HOH . K 6 HOH B 63 363 95 HOH HOH . K 6 HOH B 64 364 127 HOH HOH . K 6 HOH B 65 365 125 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PEG . . . F 4 1.022 6.573 -16.411 1 35.18 ? C1 PEG 204 A 1 HETATM 2 O O1 PEG . . . F 4 2.084 6.154 -17.264 1 36.3 ? O1 PEG 204 A 1 HETATM 3 C C2 PEG . . . F 4 1.11 8.075 -16.186 1 35.6 ? C2 PEG 204 A 1 HETATM 4 O O2 PEG . . . F 4 2.478 8.476 -16.285 1 37.81 ? O2 PEG 204 A 1 HETATM 5 C C3 PEG . . . F 4 2.718 9.769 -16.822 1 37.84 ? C3 PEG 204 A 1 HETATM 6 C C4 PEG . . . F 4 3.731 9.673 -17.955 1 37.59 ? C4 PEG 204 A 1 HETATM 7 O O4 PEG . . . F 4 4.829 10.565 -17.739 1 39.06 ? O4 PEG 204 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 317 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 7 #