data_6G67 # _model_server_result.job_id '_v72HSMMgHFuiqQsXIBSIA' _model_server_result.datetime_utc '2025-01-03 21:52:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6g67 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":101}' # _entry.id 6G67 # _exptl.entry_id 6G67 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6G67 _cell.length_a 48.11 _cell.length_b 48.11 _cell.length_c 126.969 _cell.Z_PDB 32 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6G67 _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_775 -x+2,-y+2,z -1 0 0 0 -1 0 0 0 1 96.22 96.22 0 3 'crystal symmetry operation' 3_755 -y+2,x,z 0 -1 0 1 0 0 0 0 1 96.22 0 0 4 'crystal symmetry operation' 4_575 y,-x+2,z 0 1 0 -1 0 0 0 0 1 0 96.22 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ACE 1 A ACE 0 1_555 A N GLY 2 A GLY 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale2 A C GLY 31 A GLY 30 1_555 A N NH2 32 A NH2 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.352 ? covale ? covale3 B C ACE 1 B ACE 0 1_555 B N GLY 2 B GLY 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale4 B C GLY 31 B GLY 30 1_555 B N NH2 32 B NH2 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.351 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 65 n n C1 C2 GOL sing 66 n n C1 H11 GOL sing 67 n n C1 H12 GOL sing 68 n n O1 HO1 GOL sing 69 n n C2 O2 GOL sing 70 n n C2 C3 GOL sing 71 n n C2 H2 GOL sing 72 n n O2 HO2 GOL sing 73 n n C3 O3 GOL sing 74 n n C3 H31 GOL sing 75 n n C3 H32 GOL sing 76 n n O3 HO3 GOL sing 77 n n # _atom_sites.entry_id 6G67 _atom_sites.fract_transf_matrix[1][1] 0.020786 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020786 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007876 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GOL B 1 101 1 GOL GOL . D 3 HOH A 1 101 23 HOH HOH . D 3 HOH A 2 102 7 HOH HOH . D 3 HOH A 3 103 22 HOH HOH . D 3 HOH A 4 104 12 HOH HOH . D 3 HOH A 5 105 39 HOH HOH . D 3 HOH A 6 106 17 HOH HOH . D 3 HOH A 7 107 5 HOH HOH . D 3 HOH A 8 108 56 HOH HOH . D 3 HOH A 9 109 9 HOH HOH . D 3 HOH A 10 110 8 HOH HOH . D 3 HOH A 11 111 3 HOH HOH . D 3 HOH A 12 112 35 HOH HOH . D 3 HOH A 13 113 45 HOH HOH . D 3 HOH A 14 114 18 HOH HOH . D 3 HOH A 15 115 10 HOH HOH . D 3 HOH A 16 116 49 HOH HOH . D 3 HOH A 17 117 55 HOH HOH . D 3 HOH A 18 118 31 HOH HOH . D 3 HOH A 19 119 58 HOH HOH . D 3 HOH A 20 120 61 HOH HOH . D 3 HOH A 21 121 19 HOH HOH . D 3 HOH A 22 122 44 HOH HOH . D 3 HOH A 23 123 33 HOH HOH . D 3 HOH A 24 124 27 HOH HOH . D 3 HOH A 25 125 26 HOH HOH . D 3 HOH A 26 126 52 HOH HOH . D 3 HOH A 27 127 15 HOH HOH . D 3 HOH A 28 128 46 HOH HOH . D 3 HOH A 29 129 51 HOH HOH . D 3 HOH A 30 130 40 HOH HOH . D 3 HOH A 31 131 69 HOH HOH . D 3 HOH A 32 132 16 HOH HOH . D 3 HOH A 33 133 48 HOH HOH . D 3 HOH A 34 134 60 HOH HOH . D 3 HOH A 35 135 68 HOH HOH . D 3 HOH A 36 136 14 HOH HOH . D 3 HOH A 37 137 64 HOH HOH . D 3 HOH A 38 138 65 HOH HOH . E 3 HOH B 1 201 11 HOH HOH . E 3 HOH B 2 202 30 HOH HOH . E 3 HOH B 3 203 54 HOH HOH . E 3 HOH B 4 204 20 HOH HOH . E 3 HOH B 5 205 28 HOH HOH . E 3 HOH B 6 206 62 HOH HOH . E 3 HOH B 7 207 24 HOH HOH . E 3 HOH B 8 208 42 HOH HOH . E 3 HOH B 9 209 2 HOH HOH . E 3 HOH B 10 210 13 HOH HOH . E 3 HOH B 11 211 41 HOH HOH . E 3 HOH B 12 212 6 HOH HOH . E 3 HOH B 13 213 34 HOH HOH . E 3 HOH B 14 214 21 HOH HOH . E 3 HOH B 15 215 43 HOH HOH . E 3 HOH B 16 216 4 HOH HOH . E 3 HOH B 17 217 1 HOH HOH . E 3 HOH B 18 218 53 HOH HOH . E 3 HOH B 19 219 25 HOH HOH . E 3 HOH B 20 220 59 HOH HOH . E 3 HOH B 21 221 57 HOH HOH . E 3 HOH B 22 222 47 HOH HOH . E 3 HOH B 23 223 38 HOH HOH . E 3 HOH B 24 224 66 HOH HOH . E 3 HOH B 25 225 29 HOH HOH . E 3 HOH B 26 226 37 HOH HOH . E 3 HOH B 27 227 50 HOH HOH . E 3 HOH B 28 228 32 HOH HOH . E 3 HOH B 29 229 63 HOH HOH . E 3 HOH B 30 230 36 HOH HOH . E 3 HOH B 31 231 67 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . C 2 47.179 46.976 36.641 0.38 59.9 ? C1 GOL 101 B 1 HETATM 2 O O1 GOL . . . C 2 45.939 47.546 37.002 0.38 57.11 ? O1 GOL 101 B 1 HETATM 3 C C2 GOL . . . C 2 48.222 48.074 36.441 0.38 61.25 ? C2 GOL 101 B 1 HETATM 4 O O2 GOL . . . C 2 47.719 49.309 36.906 0.38 61.79 ? O2 GOL 101 B 1 HETATM 5 C C3 GOL . . . C 2 49.5 47.713 37.196 0.38 60.53 ? C3 GOL 101 B 1 HETATM 6 O O3 GOL . . . C 2 50.399 48.8 37.171 0.38 56.77 ? O3 GOL 101 B 1 # _model_server_stats.io_time_ms 53 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 337 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #