data_6G69 # _model_server_result.job_id ueU-u-hVEDuyzus9Sd2SiQ _model_server_result.datetime_utc '2025-01-03 22:15:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6g69 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"P","auth_seq_id":101}' # _entry.id 6G69 # _exptl.entry_id 6G69 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 118.174 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4S)-2-METHYL-2,4-PENTANEDIOL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6G69 _cell.length_a 66.77 _cell.length_b 66.77 _cell.length_c 243.197 _cell.Z_PDB 126 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6G69 _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA heptameric 7 software_defined_assembly 1 PISA heptameric 7 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,O,P,T,U,V,W,X 1 1 H,I,J,K,L,M,N,Q,R,S,Y,Z,AA,BA 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 O N N ? 2 P N N ? 2 R N N ? 2 S N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 D C ACE 1 D ACE 0 1_555 D N GLY 2 D GLY 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? covale ? covale2 E C ACE 1 E ACE 0 1_555 E N GLY 2 E GLY 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.357 ? covale ? covale3 F C ACE 1 F ACE 0 1_555 F N GLY 2 F GLY 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale4 G C ACE 1 G ACE 0 1_555 G N GLY 2 G GLY 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.374 ? covale ? covale5 L C ACE 1 L ACE 0 1_555 L N GLY 2 L GLY 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? # _chem_comp.formula 'C6 H14 O2' _chem_comp.formula_weight 118.174 _chem_comp.id MPD _chem_comp.mon_nstd_flag . _chem_comp.name (4S)-2-METHYL-2,4-PENTANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MPD sing 133 n n C1 H11 MPD sing 134 n n C1 H12 MPD sing 135 n n C1 H13 MPD sing 136 n n C2 O2 MPD sing 137 n n C2 CM MPD sing 138 n n C2 C3 MPD sing 139 n n O2 HO2 MPD sing 140 n n CM HM1 MPD sing 141 n n CM HM2 MPD sing 142 n n CM HM3 MPD sing 143 n n C3 C4 MPD sing 144 n n C3 H31 MPD sing 145 n n C3 H32 MPD sing 146 n n C4 O4 MPD sing 147 n n C4 C5 MPD sing 148 n n C4 H4 MPD sing 149 n n O4 HO4 MPD sing 150 n n C5 H51 MPD sing 151 n n C5 H52 MPD sing 152 n n C5 H53 MPD sing 153 n n # _atom_sites.entry_id 6G69 _atom_sites.fract_transf_matrix[1][1] 0.014977 _atom_sites.fract_transf_matrix[1][2] 0.008647 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017294 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004112 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code O 2 MPD A 1 101 2 MPD MPD . P 2 MPD B 1 101 3 MPD MPD . Q 3 MRD H 1 101 1 MRD MPD . R 2 MPD H 1 102 5 MPD MPD . S 2 MPD M 1 101 4 MPD MPD . T 4 HOH A 1 201 2 HOH HOH . T 4 HOH A 2 202 3 HOH HOH . U 4 HOH B 1 201 8 HOH HOH . U 4 HOH B 2 202 6 HOH HOH . V 4 HOH D 1 101 7 HOH HOH . W 4 HOH F 1 101 5 HOH HOH . X 4 HOH G 1 101 10 HOH HOH . X 4 HOH G 2 102 4 HOH HOH . Y 4 HOH I 1 101 14 HOH HOH . Y 4 HOH I 2 102 12 HOH HOH . Y 4 HOH I 3 103 15 HOH HOH . Z 4 HOH K 1 101 11 HOH HOH . AA 4 HOH M 1 201 1 HOH HOH . AA 4 HOH M 2 202 9 HOH HOH . BA 4 HOH N 1 101 13 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MPD . . . P 2 48.676 69.736 1.227 1 80.9 ? C1 MPD 101 B 1 HETATM 2 C C2 MPD . . . P 2 48.194 68.777 2.314 1 72.96 ? C2 MPD 101 B 1 HETATM 3 O O2 MPD . . . P 2 47.875 69.611 3.449 1 79.96 ? O2 MPD 101 B 1 HETATM 4 C CM MPD . . . P 2 46.961 68.11 1.811 1 78.07 ? CM MPD 101 B 1 HETATM 5 C C3 MPD . . . P 2 49.207 67.671 2.646 1 78.07 ? C3 MPD 101 B 1 HETATM 6 C C4 MPD . . . P 2 49.758 67.845 4.083 1 94.6 ? C4 MPD 101 B 1 HETATM 7 O O4 MPD . . . P 2 48.612 67.608 4.933 1 68.74 ? O4 MPD 101 B 1 HETATM 8 C C5 MPD . . . P 2 51.01 67.023 4.493 1 78.71 ? C5 MPD 101 B 1 # _model_server_stats.io_time_ms 78 _model_server_stats.parse_time_ms 89 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 266 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 8 #