data_6G6F # _model_server_result.job_id h-ZbBJbSo-AY2betg-UoPw _model_server_result.datetime_utc '2025-01-03 21:32:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6g6f # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":101}' # _entry.id 6G6F # _exptl.entry_id 6G6F _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 122.143 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 109.13 _cell.angle_gamma 90 _cell.entry_id 6G6F _cell.length_a 42 _cell.length_b 58.99 _cell.length_c 47.05 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6G6F _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id I _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ACE 1 A ACE 0 1_555 A N GLY 2 A GLY 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale2 A C GLY 31 A GLY 30 1_555 A N NH2 32 A NH2 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.353 ? covale ? covale3 B C ACE 1 B ACE 0 1_555 B N GLY 2 B GLY 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale4 C C ACE 1 C ACE 0 1_555 C N GLY 2 C GLY 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale5 C C GLY 31 C GLY 30 1_555 C N NH2 32 C NH2 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.349 ? covale ? covale6 D C ACE 1 D ACE 0 1_555 D N GLY 2 D GLY 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale7 E C ACE 1 E ACE 0 1_555 E N GLY 2 E GLY 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale8 F C ACE 1 F ACE 0 1_555 F N GLY 2 F GLY 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? covale ? covale9 G C ACE 1 G ACE 0 1_555 G N GLY 2 G GLY 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale10 G C GLY 31 G GLY 30 1_555 G N NH2 32 G NH2 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.351 ? covale ? covale11 H C ACE 1 H ACE 0 1_555 H N GLY 2 H GLY 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? # _chem_comp.formula 'C4 H12 N O3 1' _chem_comp.formula_weight 122.143 _chem_comp.id TRS _chem_comp.mon_nstd_flag . _chem_comp.name 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'TRIS BUFFER' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C C1 TRS sing 165 n n C C2 TRS sing 166 n n C C3 TRS sing 167 n n C N TRS sing 168 n n C1 O1 TRS sing 169 n n C1 H11 TRS sing 170 n n C1 H12 TRS sing 171 n n C2 O2 TRS sing 172 n n C2 H21 TRS sing 173 n n C2 H22 TRS sing 174 n n C3 O3 TRS sing 175 n n C3 H31 TRS sing 176 n n C3 H32 TRS sing 177 n n N HN1 TRS sing 178 n n N HN2 TRS sing 179 n n N HN3 TRS sing 180 n n O1 HO1 TRS sing 181 n n O2 HO2 TRS sing 182 n n O3 HO3 TRS sing 183 n n # _atom_sites.entry_id 6G6F _atom_sites.fract_transf_matrix[1][1] 0.02381 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.008259 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016952 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022496 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 2 TRS A 1 101 1 TRS TRS . J 3 HOH A 1 201 175 HOH HOH . J 3 HOH A 2 202 202 HOH HOH . J 3 HOH A 3 203 195 HOH HOH . J 3 HOH A 4 204 81 HOH HOH . J 3 HOH A 5 205 85 HOH HOH . J 3 HOH A 6 206 116 HOH HOH . J 3 HOH A 7 207 3 HOH HOH . J 3 HOH A 8 208 70 HOH HOH . J 3 HOH A 9 209 49 HOH HOH . J 3 HOH A 10 210 200 HOH HOH . J 3 HOH A 11 211 125 HOH HOH . J 3 HOH A 12 212 39 HOH HOH . J 3 HOH A 13 213 22 HOH HOH . J 3 HOH A 14 214 114 HOH HOH . J 3 HOH A 15 215 216 HOH HOH . J 3 HOH A 16 216 164 HOH HOH . J 3 HOH A 17 217 21 HOH HOH . J 3 HOH A 18 218 63 HOH HOH . J 3 HOH A 19 219 55 HOH HOH . J 3 HOH A 20 220 163 HOH HOH . J 3 HOH A 21 221 23 HOH HOH . J 3 HOH A 22 222 107 HOH HOH . J 3 HOH A 23 223 159 HOH HOH . J 3 HOH A 24 224 24 HOH HOH . J 3 HOH A 25 225 46 HOH HOH . J 3 HOH A 26 226 141 HOH HOH . J 3 HOH A 27 227 68 HOH HOH . J 3 HOH A 28 228 196 HOH HOH . J 3 HOH A 29 229 135 HOH HOH . J 3 HOH A 30 230 229 HOH HOH . J 3 HOH A 31 231 133 HOH HOH . J 3 HOH A 32 232 173 HOH HOH . J 3 HOH A 33 233 228 HOH HOH . J 3 HOH A 34 234 156 HOH HOH . J 3 HOH A 35 235 178 HOH HOH . J 3 HOH A 36 236 40 HOH HOH . J 3 HOH A 37 237 154 HOH HOH . J 3 HOH A 38 238 217 HOH HOH . J 3 HOH A 39 239 168 HOH HOH . J 3 HOH A 40 240 227 HOH HOH . J 3 HOH A 41 241 94 HOH HOH . J 3 HOH A 42 242 224 HOH HOH . J 3 HOH A 43 243 140 HOH HOH . J 3 HOH A 44 244 106 HOH HOH . J 3 HOH A 45 245 187 HOH HOH . J 3 HOH A 46 246 219 HOH HOH . J 3 HOH A 47 247 169 HOH HOH . J 3 HOH A 48 248 221 HOH HOH . K 3 HOH B 1 101 36 HOH HOH . K 3 HOH B 2 102 204 HOH HOH . K 3 HOH B 3 103 80 HOH HOH . K 3 HOH B 4 104 37 HOH HOH . K 3 HOH B 5 105 127 HOH HOH . K 3 HOH B 6 106 20 HOH HOH . K 3 HOH B 7 107 97 HOH HOH . K 3 HOH B 8 108 177 HOH HOH . K 3 HOH B 9 109 66 HOH HOH . K 3 HOH B 10 110 102 HOH HOH . K 3 HOH B 11 111 83 HOH HOH . K 3 HOH B 12 112 82 HOH HOH . K 3 HOH B 13 113 126 HOH HOH . K 3 HOH B 14 114 4 HOH HOH . K 3 HOH B 15 115 234 HOH HOH . K 3 HOH B 16 116 74 HOH HOH . K 3 HOH B 17 117 124 HOH HOH . K 3 HOH B 18 118 167 HOH HOH . K 3 HOH B 19 119 189 HOH HOH . K 3 HOH B 20 120 58 HOH HOH . K 3 HOH B 21 121 166 HOH HOH . K 3 HOH B 22 122 194 HOH HOH . K 3 HOH B 23 123 120 HOH HOH . K 3 HOH B 24 124 157 HOH HOH . K 3 HOH B 25 125 93 HOH HOH . K 3 HOH B 26 126 183 HOH HOH . K 3 HOH B 27 127 233 HOH HOH . K 3 HOH B 28 128 161 HOH HOH . K 3 HOH B 29 129 222 HOH HOH . K 3 HOH B 30 130 176 HOH HOH . L 3 HOH C 1 101 28 HOH HOH . L 3 HOH C 2 102 73 HOH HOH . L 3 HOH C 3 103 26 HOH HOH . L 3 HOH C 4 104 237 HOH HOH . L 3 HOH C 5 105 130 HOH HOH . L 3 HOH C 6 106 79 HOH HOH . L 3 HOH C 7 107 86 HOH HOH . L 3 HOH C 8 108 122 HOH HOH . L 3 HOH C 9 109 54 HOH HOH . L 3 HOH C 10 110 162 HOH HOH . L 3 HOH C 11 111 150 HOH HOH . L 3 HOH C 12 112 112 HOH HOH . L 3 HOH C 13 113 151 HOH HOH . L 3 HOH C 14 114 128 HOH HOH . L 3 HOH C 15 115 53 HOH HOH . L 3 HOH C 16 116 72 HOH HOH . L 3 HOH C 17 117 110 HOH HOH . L 3 HOH C 18 118 60 HOH HOH . L 3 HOH C 19 119 230 HOH HOH . L 3 HOH C 20 120 5 HOH HOH . L 3 HOH C 21 121 171 HOH HOH . L 3 HOH C 22 122 118 HOH HOH . L 3 HOH C 23 123 69 HOH HOH . L 3 HOH C 24 124 67 HOH HOH . L 3 HOH C 25 125 215 HOH HOH . L 3 HOH C 26 126 145 HOH HOH . L 3 HOH C 27 127 147 HOH HOH . L 3 HOH C 28 128 170 HOH HOH . L 3 HOH C 29 129 117 HOH HOH . M 3 HOH D 1 101 198 HOH HOH . M 3 HOH D 2 102 32 HOH HOH . M 3 HOH D 3 103 27 HOH HOH . M 3 HOH D 4 104 30 HOH HOH . M 3 HOH D 5 105 35 HOH HOH . M 3 HOH D 6 106 182 HOH HOH . M 3 HOH D 7 107 34 HOH HOH . M 3 HOH D 8 108 100 HOH HOH . M 3 HOH D 9 109 8 HOH HOH . M 3 HOH D 10 110 61 HOH HOH . M 3 HOH D 11 111 31 HOH HOH . M 3 HOH D 12 112 9 HOH HOH . M 3 HOH D 13 113 174 HOH HOH . M 3 HOH D 14 114 75 HOH HOH . M 3 HOH D 15 115 111 HOH HOH . M 3 HOH D 16 116 148 HOH HOH . M 3 HOH D 17 117 101 HOH HOH . M 3 HOH D 18 118 6 HOH HOH . M 3 HOH D 19 119 181 HOH HOH . M 3 HOH D 20 120 205 HOH HOH . M 3 HOH D 21 121 153 HOH HOH . M 3 HOH D 22 122 10 HOH HOH . M 3 HOH D 23 123 152 HOH HOH . M 3 HOH D 24 124 103 HOH HOH . M 3 HOH D 25 125 146 HOH HOH . M 3 HOH D 26 126 209 HOH HOH . M 3 HOH D 27 127 7 HOH HOH . M 3 HOH D 28 128 213 HOH HOH . M 3 HOH D 29 129 188 HOH HOH . M 3 HOH D 30 130 197 HOH HOH . M 3 HOH D 31 131 29 HOH HOH . M 3 HOH D 32 132 158 HOH HOH . M 3 HOH D 33 133 226 HOH HOH . N 3 HOH E 1 101 232 HOH HOH . N 3 HOH E 2 102 14 HOH HOH . N 3 HOH E 3 103 184 HOH HOH . N 3 HOH E 4 104 210 HOH HOH . N 3 HOH E 5 105 144 HOH HOH . N 3 HOH E 6 106 212 HOH HOH . N 3 HOH E 7 107 121 HOH HOH . N 3 HOH E 8 108 220 HOH HOH . N 3 HOH E 9 109 88 HOH HOH . N 3 HOH E 10 110 77 HOH HOH . N 3 HOH E 11 111 139 HOH HOH . N 3 HOH E 12 112 95 HOH HOH . N 3 HOH E 13 113 11 HOH HOH . N 3 HOH E 14 114 2 HOH HOH . N 3 HOH E 15 115 193 HOH HOH . N 3 HOH E 16 116 52 HOH HOH . N 3 HOH E 17 117 172 HOH HOH . N 3 HOH E 18 118 92 HOH HOH . N 3 HOH E 19 119 191 HOH HOH . N 3 HOH E 20 120 149 HOH HOH . N 3 HOH E 21 121 214 HOH HOH . N 3 HOH E 22 122 235 HOH HOH . N 3 HOH E 23 123 134 HOH HOH . O 3 HOH F 1 101 142 HOH HOH . O 3 HOH F 2 102 185 HOH HOH . O 3 HOH F 3 103 18 HOH HOH . O 3 HOH F 4 104 136 HOH HOH . O 3 HOH F 5 105 78 HOH HOH . O 3 HOH F 6 106 56 HOH HOH . O 3 HOH F 7 107 89 HOH HOH . O 3 HOH F 8 108 131 HOH HOH . O 3 HOH F 9 109 62 HOH HOH . O 3 HOH F 10 110 218 HOH HOH . O 3 HOH F 11 111 91 HOH HOH . O 3 HOH F 12 112 33 HOH HOH . O 3 HOH F 13 113 99 HOH HOH . O 3 HOH F 14 114 12 HOH HOH . O 3 HOH F 15 115 16 HOH HOH . O 3 HOH F 16 116 76 HOH HOH . O 3 HOH F 17 117 201 HOH HOH . O 3 HOH F 18 118 129 HOH HOH . O 3 HOH F 19 119 1 HOH HOH . O 3 HOH F 20 120 225 HOH HOH . O 3 HOH F 21 121 105 HOH HOH . O 3 HOH F 22 122 13 HOH HOH . O 3 HOH F 23 123 231 HOH HOH . O 3 HOH F 24 124 207 HOH HOH . O 3 HOH F 25 125 109 HOH HOH . O 3 HOH F 26 126 59 HOH HOH . P 3 HOH G 1 101 223 HOH HOH . P 3 HOH G 2 102 180 HOH HOH . P 3 HOH G 3 103 203 HOH HOH . P 3 HOH G 4 104 44 HOH HOH . P 3 HOH G 5 105 71 HOH HOH . P 3 HOH G 6 106 57 HOH HOH . P 3 HOH G 7 107 47 HOH HOH . P 3 HOH G 8 108 38 HOH HOH . P 3 HOH G 9 109 51 HOH HOH . P 3 HOH G 10 110 43 HOH HOH . P 3 HOH G 11 111 206 HOH HOH . P 3 HOH G 12 112 48 HOH HOH . P 3 HOH G 13 113 65 HOH HOH . P 3 HOH G 14 114 25 HOH HOH . P 3 HOH G 15 115 104 HOH HOH . P 3 HOH G 16 116 17 HOH HOH . P 3 HOH G 17 117 96 HOH HOH . P 3 HOH G 18 118 45 HOH HOH . P 3 HOH G 19 119 98 HOH HOH . P 3 HOH G 20 120 19 HOH HOH . P 3 HOH G 21 121 108 HOH HOH . P 3 HOH G 22 122 15 HOH HOH . P 3 HOH G 23 123 143 HOH HOH . P 3 HOH G 24 124 50 HOH HOH . P 3 HOH G 25 125 236 HOH HOH . P 3 HOH G 26 126 208 HOH HOH . Q 3 HOH H 1 101 211 HOH HOH . Q 3 HOH H 2 102 165 HOH HOH . Q 3 HOH H 3 103 192 HOH HOH . Q 3 HOH H 4 104 199 HOH HOH . Q 3 HOH H 5 105 84 HOH HOH . Q 3 HOH H 6 106 119 HOH HOH . Q 3 HOH H 7 107 90 HOH HOH . Q 3 HOH H 8 108 123 HOH HOH . Q 3 HOH H 9 109 41 HOH HOH . Q 3 HOH H 10 110 64 HOH HOH . Q 3 HOH H 11 111 186 HOH HOH . Q 3 HOH H 12 112 179 HOH HOH . Q 3 HOH H 13 113 138 HOH HOH . Q 3 HOH H 14 114 113 HOH HOH . Q 3 HOH H 15 115 87 HOH HOH . Q 3 HOH H 16 116 137 HOH HOH . Q 3 HOH H 17 117 160 HOH HOH . Q 3 HOH H 18 118 42 HOH HOH . Q 3 HOH H 19 119 155 HOH HOH . Q 3 HOH H 20 120 132 HOH HOH . Q 3 HOH H 21 121 115 HOH HOH . Q 3 HOH H 22 122 190 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C TRS . . . I 2 5.088 -13.671 14.079 1 25.85 ? C TRS 101 A 1 HETATM 2 C C1 TRS . . . I 2 4.377 -12.633 13.218 1 39.6 ? C1 TRS 101 A 1 HETATM 3 C C2 TRS . . . I 2 4.069 -14.528 14.824 1 37.92 ? C2 TRS 101 A 1 HETATM 4 C C3 TRS . . . I 2 6.017 -12.993 15.067 1 26.27 ? C3 TRS 101 A 1 HETATM 5 N N TRS . . . I 2 5.892 -14.532 13.209 1 34.21 ? N TRS 101 A 1 HETATM 6 O O1 TRS . . . I 2 3.49 -11.875 14.012 1 59.53 ? O1 TRS 101 A 1 HETATM 7 O O2 TRS . . . I 2 3.252 -15.216 13.901 1 56.82 ? O2 TRS 101 A 1 HETATM 8 O O3 TRS . . . I 2 5.271 -12.35 16.077 1 60.78 ? O3 TRS 101 A 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 249 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 8 #