data_6G6U # _model_server_result.job_id ayc1urIYRYTNAa0OgAJCFA _model_server_result.datetime_utc '2025-01-16 02:42:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6g6u # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 6G6U # _exptl.entry_id 6G6U _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 677.933 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-DIMYRISTOYL-RAC-GLYCERO-3-PHOSPHOCHOLINE _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 94.03 _cell.angle_gamma 90 _cell.entry_id 6G6U _cell.length_a 51.4 _cell.length_b 58.15 _cell.length_c 122.72 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6G6U _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N ? 2 F N N # _chem_comp.formula 'C36 H72 N O8 P' _chem_comp.formula_weight 677.933 _chem_comp.id MC3 _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-DIMYRISTOYL-RAC-GLYCERO-3-PHOSPHOCHOLINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MC3 sing 218 n n C1 O3P MC3 sing 219 n n C1 H11 MC3 sing 220 n n C1 H12 MC3 sing 221 n n C2 C3 MC3 sing 222 n n C2 O2 MC3 sing 223 n n C2 H2 MC3 sing 224 n n C3 O3 MC3 sing 225 n n C3 H31 MC3 sing 226 n n C3 H32 MC3 sing 227 n n C4 C5 MC3 sing 228 n n C4 O4P MC3 sing 229 n n C4 H41 MC3 sing 230 n n C4 H42 MC3 sing 231 n n C5 N MC3 sing 232 n n C5 H51 MC3 sing 233 n n C5 H52 MC3 sing 234 n n C6 N MC3 sing 235 n n C6 H61 MC3 sing 236 n n C6 H62 MC3 sing 237 n n C6 H63 MC3 sing 238 n n C7 N MC3 sing 239 n n C7 H71 MC3 sing 240 n n C7 H72 MC3 sing 241 n n C7 H73 MC3 sing 242 n n C8 N MC3 sing 243 n n C8 H81 MC3 sing 244 n n C8 H82 MC3 sing 245 n n C8 H83 MC3 sing 246 n n C11 C12 MC3 sing 247 n n C11 O3 MC3 sing 248 n n C11 O11 MC3 doub 249 n n C12 C13 MC3 sing 250 n n C12 H121 MC3 sing 251 n n C12 H122 MC3 sing 252 n n C13 C14 MC3 sing 253 n n C13 H131 MC3 sing 254 n n C13 H132 MC3 sing 255 n n C14 C15 MC3 sing 256 n n C14 H141 MC3 sing 257 n n C14 H142 MC3 sing 258 n n C15 C16 MC3 sing 259 n n C15 H151 MC3 sing 260 n n C15 H152 MC3 sing 261 n n C16 C17 MC3 sing 262 n n C16 H161 MC3 sing 263 n n C16 H162 MC3 sing 264 n n C17 C18 MC3 sing 265 n n C17 H171 MC3 sing 266 n n C17 H172 MC3 sing 267 n n C18 C19 MC3 sing 268 n n C18 H181 MC3 sing 269 n n C18 H182 MC3 sing 270 n n C19 C20 MC3 sing 271 n n C19 H191 MC3 sing 272 n n C19 H192 MC3 sing 273 n n C20 C21 MC3 sing 274 n n C20 H201 MC3 sing 275 n n C20 H202 MC3 sing 276 n n C21 C22 MC3 sing 277 n n C21 H211 MC3 sing 278 n n C21 H212 MC3 sing 279 n n C22 C23 MC3 sing 280 n n C22 H221 MC3 sing 281 n n C22 H222 MC3 sing 282 n n C23 C24 MC3 sing 283 n n C23 H231 MC3 sing 284 n n C23 H232 MC3 sing 285 n n C24 H241 MC3 sing 286 n n C24 H242 MC3 sing 287 n n C24 H243 MC3 sing 288 n n C31 C32 MC3 sing 289 n n C31 O2 MC3 sing 290 n n C31 O31 MC3 doub 291 n n C32 C33 MC3 sing 292 n n C32 H321 MC3 sing 293 n n C32 H322 MC3 sing 294 n n C33 C34 MC3 sing 295 n n C33 H331 MC3 sing 296 n n C33 H332 MC3 sing 297 n n C34 C35 MC3 sing 298 n n C34 H341 MC3 sing 299 n n C34 H342 MC3 sing 300 n n C35 C36 MC3 sing 301 n n C35 H351 MC3 sing 302 n n C35 H352 MC3 sing 303 n n C36 C37 MC3 sing 304 n n C36 H361 MC3 sing 305 n n C36 H362 MC3 sing 306 n n C37 C38 MC3 sing 307 n n C37 H371 MC3 sing 308 n n C37 H372 MC3 sing 309 n n C38 C39 MC3 sing 310 n n C38 H381 MC3 sing 311 n n C38 H382 MC3 sing 312 n n C39 C40 MC3 sing 313 n n C39 H391 MC3 sing 314 n n C39 H392 MC3 sing 315 n n C40 C41 MC3 sing 316 n n C40 H401 MC3 sing 317 n n C40 H402 MC3 sing 318 n n C41 C42 MC3 sing 319 n n C41 H411 MC3 sing 320 n n C41 H412 MC3 sing 321 n n C42 C43 MC3 sing 322 n n C42 H421 MC3 sing 323 n n C42 H422 MC3 sing 324 n n C43 C44 MC3 sing 325 n n C43 H431 MC3 sing 326 n n C43 H432 MC3 sing 327 n n C44 H441 MC3 sing 328 n n C44 H442 MC3 sing 329 n n C44 H443 MC3 sing 330 n n O1P P MC3 doub 331 n n O2P P MC3 sing 332 n n O3P P MC3 sing 333 n n O4P P MC3 sing 334 n n # _atom_sites.entry_id 6G6U _atom_sites.fract_transf_matrix[1][1] 0.019455 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001371 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017197 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008169 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MC3 A 1 301 500 MC3 MC3 . D 3 NO3 A 1 302 600 NO3 NO3 . E 2 MC3 B 1 301 500 MC3 MC3 . F 2 MC3 B 1 302 550 MC3 MC3 . G 3 NO3 B 1 303 600 NO3 NO3 . H 4 HOH A 1 701 701 HOH HOH . H 4 HOH A 2 702 705 HOH HOH . H 4 HOH A 3 703 702 HOH HOH . H 4 HOH A 4 704 704 HOH HOH . H 4 HOH A 5 705 703 HOH HOH . H 4 HOH A 6 706 706 HOH HOH . I 4 HOH B 1 401 710 HOH HOH . I 4 HOH B 2 402 709 HOH HOH . I 4 HOH B 3 403 708 HOH HOH . I 4 HOH B 4 404 707 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MC3 . . . C 2 8.029 -4.427 -15.128 0.5 48.82 ? C1 MC3 301 A 1 HETATM 2 C C2 MC3 . . . C 2 8.001 -4.733 -13.649 0.5 45.81 ? C2 MC3 301 A 1 HETATM 3 C C3 MC3 . . . C 2 6.639 -4.256 -13.158 1 44.93 ? C3 MC3 301 A 1 HETATM 4 C C31 MC3 . . . C 2 8.398 -6.574 -12.087 0.5 41.96 ? C31 MC3 301 A 1 HETATM 5 C C32 MC3 . . . C 2 7.298 -6.426 -11.038 1 38.74 ? C32 MC3 301 A 1 HETATM 6 C C33 MC3 . . . C 2 5.95 -6.15 -11.72 1 36.44 ? C33 MC3 301 A 1 HETATM 7 C C34 MC3 . . . C 2 4.853 -5.735 -10.748 1 33.78 ? C34 MC3 301 A 1 HETATM 8 C C35 MC3 . . . C 2 3.92 -6.896 -10.425 1 31.66 ? C35 MC3 301 A 1 HETATM 9 C C36 MC3 . . . C 2 2.653 -6.397 -9.727 1 30.08 ? C36 MC3 301 A 1 HETATM 10 C C37 MC3 . . . C 2 2.472 -6.974 -8.324 1 28.57 ? C37 MC3 301 A 1 HETATM 11 C C38 MC3 . . . C 2 1.023 -7.279 -7.974 1 27.42 ? C38 MC3 301 A 1 HETATM 12 C C39 MC3 . . . C 2 0.899 -7.178 -6.466 1 26.66 ? C39 MC3 301 A 1 HETATM 13 C C40 MC3 . . . C 2 0.91 -8.493 -5.675 1 26.39 ? C40 MC3 301 A 1 HETATM 14 C C41 MC3 . . . C 2 1.638 -8.368 -4.341 1 25.57 ? C41 MC3 301 A 1 HETATM 15 C C42 MC3 . . . C 2 0.888 -9.093 -3.242 1 25.29 ? C42 MC3 301 A 1 HETATM 16 C C43 MC3 . . . C 2 1.698 -9.051 -1.96 1 24.83 ? C43 MC3 301 A 1 HETATM 17 C C44 MC3 . . . C 2 1.143 -9.909 -0.841 1 24.94 ? C44 MC3 301 A 1 HETATM 18 O O2 MC3 . . . C 2 8.176 -6.143 -13.486 0.5 43.38 ? O2 MC3 301 A 1 HETATM 19 O O31 MC3 . . . C 2 9.475 -7.102 -11.775 0.5 41.26 ? O31 MC3 301 A 1 HETATM 20 O O1P MC3 . . . C 2 9.172 -7.327 -15.417 0.5 54.8 ? O1P MC3 301 A 1 HETATM 21 O O2P MC3 . . . C 2 7.193 -7.654 -17.115 0.5 52.71 ? O2P MC3 301 A 1 HETATM 22 O O3P MC3 . . . C 2 7.384 -5.518 -15.797 0.5 52.38 ? O3P MC3 301 A 1 HETATM 23 P P MC3 . . . C 2 8.212 -6.739 -16.486 0.5 55.08 ? P MC3 301 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 328 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 23 #