data_6G76 # _model_server_result.job_id UE2xGO2Vv_AidV-kbzsQIQ _model_server_result.datetime_utc '2024-11-23 04:28:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6g76 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 6G76 # _exptl.entry_id 6G76 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6G76 _cell.length_a 62.489 _cell.length_b 52.331 _cell.length_c 115.505 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6G76 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,G 1 1 B,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C TYR 189 A TYR 231 1_555 A N SEP 190 A SEP 232 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale2 A C SEP 190 A SEP 232 1_555 A N PHE 191 A PHE 233 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? metalc ? metalc1 A SG CYS 192 A CYS 234 1_555 E ZN ZN . A ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.517 ? metalc ? metalc2 A NE2 HIS 208 A HIS 250 1_555 E ZN ZN . A ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.438 ? metalc ? metalc3 D O3G ANP . A ANP 402 1_555 E ZN ZN . A ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? metalc ? metalc4 D O1B ANP . A ANP 402 1_555 E ZN ZN . A ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.989 ? metalc ? metalc5 D N3B ANP . A ANP 402 1_555 E ZN ZN . A ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.657 ? # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 13 n n PG O2G ANP sing 14 n n PG O3G ANP sing 15 n n PG N3B ANP sing 16 n n O2G HOG2 ANP sing 17 n n O3G HOG3 ANP sing 18 n n PB O1B ANP doub 19 n n PB O2B ANP sing 20 n n PB N3B ANP sing 21 n n PB O3A ANP sing 22 n n O2B HOB2 ANP sing 23 n n N3B HNB1 ANP sing 24 n n PA O1A ANP doub 25 n n PA O2A ANP sing 26 n n PA O3A ANP sing 27 n n PA O5' ANP sing 28 n n O2A HOA2 ANP sing 29 n n O5' C5' ANP sing 30 n n C5' C4' ANP sing 31 n n C5' "H5'1" ANP sing 32 n n C5' "H5'2" ANP sing 33 n n C4' O4' ANP sing 34 n n C4' C3' ANP sing 35 n n C4' H4' ANP sing 36 n n O4' C1' ANP sing 37 n n C3' O3' ANP sing 38 n n C3' C2' ANP sing 39 n n C3' H3' ANP sing 40 n n O3' HO3' ANP sing 41 n n C2' O2' ANP sing 42 n n C2' C1' ANP sing 43 n n C2' H2' ANP sing 44 n n O2' HO2' ANP sing 45 n n C1' N9 ANP sing 46 n n C1' H1' ANP sing 47 n n N9 C8 ANP sing 48 n y N9 C4 ANP sing 49 n y C8 N7 ANP doub 50 n y C8 H8 ANP sing 51 n n N7 C5 ANP sing 52 n y C5 C6 ANP sing 53 n y C5 C4 ANP doub 54 n y C6 N6 ANP sing 55 n n C6 N1 ANP doub 56 n y N6 HN61 ANP sing 57 n n N6 HN62 ANP sing 58 n n N1 C2 ANP sing 59 n y C2 N3 ANP doub 60 n y C2 H2 ANP sing 61 n n N3 C4 ANP sing 62 n y # _atom_sites.entry_id 6G76 _atom_sites.fract_transf_matrix[1][1] 0.016003 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019109 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008658 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ANP A 1 401 1 ANP ANP . D 2 ANP A 1 402 2 ANP ANP . E 3 ZN A 1 403 1 ZN ZN . F 2 ANP B 1 401 3 ANP ANP . G 4 HOH A 1 501 13 HOH HOH . G 4 HOH A 2 502 8 HOH HOH . G 4 HOH A 3 503 33 HOH HOH . G 4 HOH A 4 504 25 HOH HOH . G 4 HOH A 5 505 3 HOH HOH . G 4 HOH A 6 506 18 HOH HOH . G 4 HOH A 7 507 44 HOH HOH . G 4 HOH A 8 508 2 HOH HOH . G 4 HOH A 9 509 42 HOH HOH . G 4 HOH A 10 510 26 HOH HOH . G 4 HOH A 11 511 21 HOH HOH . G 4 HOH A 12 512 30 HOH HOH . G 4 HOH A 13 513 1 HOH HOH . G 4 HOH A 14 514 24 HOH HOH . G 4 HOH A 15 515 6 HOH HOH . G 4 HOH A 16 516 9 HOH HOH . G 4 HOH A 17 517 11 HOH HOH . H 4 HOH B 1 501 23 HOH HOH . H 4 HOH B 2 502 34 HOH HOH . H 4 HOH B 3 503 37 HOH HOH . H 4 HOH B 4 504 17 HOH HOH . H 4 HOH B 5 505 10 HOH HOH . H 4 HOH B 6 506 12 HOH HOH . H 4 HOH B 7 507 43 HOH HOH . H 4 HOH B 8 508 15 HOH HOH . H 4 HOH B 9 509 4 HOH HOH . H 4 HOH B 10 510 16 HOH HOH . H 4 HOH B 11 511 41 HOH HOH . H 4 HOH B 12 512 14 HOH HOH . H 4 HOH B 13 513 40 HOH HOH . H 4 HOH B 14 514 32 HOH HOH . H 4 HOH B 15 515 20 HOH HOH . H 4 HOH B 16 516 28 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . C 2 -6.438 5.75 -3.817 1 84.59 ? PG ANP 401 A 1 HETATM 2 O O1G ANP . . . C 2 -6.6 4.532 -4.668 1 69.11 ? O1G ANP 401 A 1 HETATM 3 O O2G ANP . . . C 2 -6.301 5.278 -2.321 1 58.6 ? O2G ANP 401 A 1 HETATM 4 O O3G ANP . . . C 2 -7.719 6.672 -3.95 1 59.92 ? O3G ANP 401 A 1 HETATM 5 P PB ANP . . . C 2 -4.873 6.936 -5.888 1 60.56 ? PB ANP 401 A 1 HETATM 6 O O1B ANP . . . C 2 -5.651 5.975 -6.718 1 48.06 ? O1B ANP 401 A 1 HETATM 7 O O2B ANP . . . C 2 -3.378 6.781 -6.267 1 35.69 ? O2B ANP 401 A 1 HETATM 8 N N3B ANP . . . C 2 -5.039 6.62 -4.245 1 72.84 ? N3B ANP 401 A 1 HETATM 9 P PA ANP . . . C 2 -6.817 8.59 -6.784 1 38.97 ? PA ANP 401 A 1 HETATM 10 O O1A ANP . . . C 2 -6.898 8.156 -8.199 1 34.89 ? O1A ANP 401 A 1 HETATM 11 O O2A ANP . . . C 2 -7.769 7.822 -5.869 1 29.88 ? O2A ANP 401 A 1 HETATM 12 O O3A ANP . . . C 2 -5.363 8.386 -6.185 1 56.77 ? O3A ANP 401 A 1 HETATM 13 O O5' ANP . . . C 2 -7.064 10.157 -6.75 1 28.81 ? O5' ANP 401 A 1 HETATM 14 C C5' ANP . . . C 2 -6.982 10.91 -5.528 1 35.51 ? C5' ANP 401 A 1 HETATM 15 C C4' ANP . . . C 2 -7.536 12.286 -5.802 1 36 ? C4' ANP 401 A 1 HETATM 16 O O4' ANP . . . C 2 -6.99 12.763 -7.042 1 39.67 ? O4' ANP 401 A 1 HETATM 17 C C3' ANP . . . C 2 -9.06 12.356 -5.898 1 29.38 ? C3' ANP 401 A 1 HETATM 18 O O3' ANP . . . C 2 -9.576 13.18 -4.861 1 48.79 ? O3' ANP 401 A 1 HETATM 19 C C2' ANP . . . C 2 -9.358 12.95 -7.285 1 30.01 ? C2' ANP 401 A 1 HETATM 20 O O2' ANP . . . C 2 -10.117 14.152 -7.194 1 50.21 ? O2' ANP 401 A 1 HETATM 21 C C1' ANP . . . C 2 -7.991 13.246 -7.907 1 26.43 ? C1' ANP 401 A 1 HETATM 22 N N9 ANP . . . C 2 -7.791 12.606 -9.192 1 22.2 ? N9 ANP 401 A 1 HETATM 23 C C8 ANP . . . C 2 -7.38 11.317 -9.414 1 19.74 ? C8 ANP 401 A 1 HETATM 24 N N7 ANP . . . C 2 -7.275 11 -10.681 1 16.61 ? N7 ANP 401 A 1 HETATM 25 C C5 ANP . . . C 2 -7.641 12.165 -11.342 1 16.65 ? C5 ANP 401 A 1 HETATM 26 C C6 ANP . . . C 2 -7.739 12.49 -12.711 1 18.19 ? C6 ANP 401 A 1 HETATM 27 N N6 ANP . . . C 2 -7.465 11.626 -13.691 1 18.18 ? N6 ANP 401 A 1 HETATM 28 N N1 ANP . . . C 2 -8.134 13.749 -13.034 1 28.66 ? N1 ANP 401 A 1 HETATM 29 C C2 ANP . . . C 2 -8.414 14.605 -12.044 1 36.67 ? C2 ANP 401 A 1 HETATM 30 N N3 ANP . . . C 2 -8.352 14.41 -10.722 1 39.77 ? N3 ANP 401 A 1 HETATM 31 C C4 ANP . . . C 2 -7.959 13.162 -10.437 1 20.97 ? C4 ANP 401 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 233 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 31 #