data_6G76 # _model_server_result.job_id YBmG4RMA_PrU45MsjisTFg _model_server_result.datetime_utc '2024-11-23 04:14:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6g76 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":402}' # _entry.id 6G76 # _exptl.entry_id 6G76 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6G76 _cell.length_a 62.489 _cell.length_b 52.331 _cell.length_c 115.505 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6G76 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,G 1 1 B,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C TYR 189 A TYR 231 1_555 A N SEP 190 A SEP 232 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale2 A C SEP 190 A SEP 232 1_555 A N PHE 191 A PHE 233 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? metalc ? metalc1 A SG CYS 192 A CYS 234 1_555 E ZN ZN . A ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.517 ? metalc ? metalc2 A NE2 HIS 208 A HIS 250 1_555 E ZN ZN . A ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.438 ? metalc ? metalc3 D O3G ANP . A ANP 402 1_555 E ZN ZN . A ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? metalc ? metalc4 D O1B ANP . A ANP 402 1_555 E ZN ZN . A ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.989 ? metalc ? metalc5 D N3B ANP . A ANP 402 1_555 E ZN ZN . A ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.657 ? # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 13 n n PG O2G ANP sing 14 n n PG O3G ANP sing 15 n n PG N3B ANP sing 16 n n O2G HOG2 ANP sing 17 n n O3G HOG3 ANP sing 18 n n PB O1B ANP doub 19 n n PB O2B ANP sing 20 n n PB N3B ANP sing 21 n n PB O3A ANP sing 22 n n O2B HOB2 ANP sing 23 n n N3B HNB1 ANP sing 24 n n PA O1A ANP doub 25 n n PA O2A ANP sing 26 n n PA O3A ANP sing 27 n n PA O5' ANP sing 28 n n O2A HOA2 ANP sing 29 n n O5' C5' ANP sing 30 n n C5' C4' ANP sing 31 n n C5' "H5'1" ANP sing 32 n n C5' "H5'2" ANP sing 33 n n C4' O4' ANP sing 34 n n C4' C3' ANP sing 35 n n C4' H4' ANP sing 36 n n O4' C1' ANP sing 37 n n C3' O3' ANP sing 38 n n C3' C2' ANP sing 39 n n C3' H3' ANP sing 40 n n O3' HO3' ANP sing 41 n n C2' O2' ANP sing 42 n n C2' C1' ANP sing 43 n n C2' H2' ANP sing 44 n n O2' HO2' ANP sing 45 n n C1' N9 ANP sing 46 n n C1' H1' ANP sing 47 n n N9 C8 ANP sing 48 n y N9 C4 ANP sing 49 n y C8 N7 ANP doub 50 n y C8 H8 ANP sing 51 n n N7 C5 ANP sing 52 n y C5 C6 ANP sing 53 n y C5 C4 ANP doub 54 n y C6 N6 ANP sing 55 n n C6 N1 ANP doub 56 n y N6 HN61 ANP sing 57 n n N6 HN62 ANP sing 58 n n N1 C2 ANP sing 59 n y C2 N3 ANP doub 60 n y C2 H2 ANP sing 61 n n N3 C4 ANP sing 62 n y # _atom_sites.entry_id 6G76 _atom_sites.fract_transf_matrix[1][1] 0.016003 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019109 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008658 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ANP A 1 401 1 ANP ANP . D 2 ANP A 1 402 2 ANP ANP . E 3 ZN A 1 403 1 ZN ZN . F 2 ANP B 1 401 3 ANP ANP . G 4 HOH A 1 501 13 HOH HOH . G 4 HOH A 2 502 8 HOH HOH . G 4 HOH A 3 503 33 HOH HOH . G 4 HOH A 4 504 25 HOH HOH . G 4 HOH A 5 505 3 HOH HOH . G 4 HOH A 6 506 18 HOH HOH . G 4 HOH A 7 507 44 HOH HOH . G 4 HOH A 8 508 2 HOH HOH . G 4 HOH A 9 509 42 HOH HOH . G 4 HOH A 10 510 26 HOH HOH . G 4 HOH A 11 511 21 HOH HOH . G 4 HOH A 12 512 30 HOH HOH . G 4 HOH A 13 513 1 HOH HOH . G 4 HOH A 14 514 24 HOH HOH . G 4 HOH A 15 515 6 HOH HOH . G 4 HOH A 16 516 9 HOH HOH . G 4 HOH A 17 517 11 HOH HOH . H 4 HOH B 1 501 23 HOH HOH . H 4 HOH B 2 502 34 HOH HOH . H 4 HOH B 3 503 37 HOH HOH . H 4 HOH B 4 504 17 HOH HOH . H 4 HOH B 5 505 10 HOH HOH . H 4 HOH B 6 506 12 HOH HOH . H 4 HOH B 7 507 43 HOH HOH . H 4 HOH B 8 508 15 HOH HOH . H 4 HOH B 9 509 4 HOH HOH . H 4 HOH B 10 510 16 HOH HOH . H 4 HOH B 11 511 41 HOH HOH . H 4 HOH B 12 512 14 HOH HOH . H 4 HOH B 13 513 40 HOH HOH . H 4 HOH B 14 514 32 HOH HOH . H 4 HOH B 15 515 20 HOH HOH . H 4 HOH B 16 516 28 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . D 2 -3.779 -6.422 -3.293 1 129.42 ? PG ANP 402 A 1 HETATM 2 O O1G ANP . . . D 2 -3.559 -6.245 -4.85 1 105.16 ? O1G ANP 402 A 1 HETATM 3 O O2G ANP . . . D 2 -2.665 -5.645 -2.487 1 103.88 ? O2G ANP 402 A 1 HETATM 4 O O3G ANP . . . D 2 -5.112 -5.831 -2.969 1 116.81 ? O3G ANP 402 A 1 HETATM 5 P PB ANP . . . D 2 -3.727 -8.344 -1.249 1 120.19 ? PB ANP 402 A 1 HETATM 6 O O1B ANP . . . D 2 -5.121 -8.481 -0.739 1 106.77 ? O1B ANP 402 A 1 HETATM 7 O O2B ANP . . . D 2 -3.021 -7.164 -0.525 1 114.68 ? O2B ANP 402 A 1 HETATM 8 N N3B ANP . . . D 2 -3.738 -8.077 -2.908 1 97.22 ? N3B ANP 402 A 1 HETATM 9 P PA ANP . . . D 2 -2.945 -10.717 -2.181 1 117.44 ? PA ANP 402 A 1 HETATM 10 O O1A ANP . . . D 2 -1.85 -10.407 -3.131 1 96.01 ? O1A ANP 402 A 1 HETATM 11 O O2A ANP . . . D 2 -2.852 -12.105 -1.546 1 106.48 ? O2A ANP 402 A 1 HETATM 12 O O3A ANP . . . D 2 -2.967 -9.674 -0.989 1 117.63 ? O3A ANP 402 A 1 HETATM 13 O O5' ANP . . . D 2 -4.313 -10.482 -2.954 1 107.76 ? O5' ANP 402 A 1 HETATM 14 C C5' ANP . . . D 2 -4.506 -11.029 -4.275 1 101.07 ? C5' ANP 402 A 1 HETATM 15 C C4' ANP . . . D 2 -5.436 -12.214 -4.16 1 103.12 ? C4' ANP 402 A 1 HETATM 16 O O4' ANP . . . D 2 -6.595 -11.991 -4.982 1 93.05 ? O4' ANP 402 A 1 HETATM 17 C C3' ANP . . . D 2 -4.837 -13.57 -4.538 1 103.07 ? C3' ANP 402 A 1 HETATM 18 O O3' ANP . . . D 2 -4.873 -14.465 -3.431 1 102.47 ? O3' ANP 402 A 1 HETATM 19 C C2' ANP . . . D 2 -5.693 -14.083 -5.71 1 84.05 ? C2' ANP 402 A 1 HETATM 20 O O2' ANP . . . D 2 -6.318 -15.33 -5.417 1 75.35 ? O2' ANP 402 A 1 HETATM 21 C C1' ANP . . . D 2 -6.756 -13.007 -5.944 1 73.6 ? C1' ANP 402 A 1 HETATM 22 N N9 ANP . . . D 2 -6.699 -12.392 -7.258 1 65.95 ? N9 ANP 402 A 1 HETATM 23 C C8 ANP . . . D 2 -6.002 -11.272 -7.633 1 63.17 ? C8 ANP 402 A 1 HETATM 24 N N7 ANP . . . D 2 -6.147 -10.947 -8.897 1 61.11 ? N7 ANP 402 A 1 HETATM 25 C C5 ANP . . . D 2 -7.004 -11.927 -9.387 1 58.51 ? C5 ANP 402 A 1 HETATM 26 C C6 ANP . . . D 2 -7.554 -12.152 -10.669 1 55.67 ? C6 ANP 402 A 1 HETATM 27 N N6 ANP . . . D 2 -7.305 -11.372 -11.722 1 62.46 ? N6 ANP 402 A 1 HETATM 28 N N1 ANP . . . D 2 -8.376 -13.224 -10.822 1 71.9 ? N1 ANP 402 A 1 HETATM 29 C C2 ANP . . . D 2 -8.62 -14 -9.759 1 78.35 ? C2 ANP 402 A 1 HETATM 30 N N3 ANP . . . D 2 -8.157 -13.882 -8.509 1 63.31 ? N3 ANP 402 A 1 HETATM 31 C C4 ANP . . . D 2 -7.351 -12.819 -8.391 1 61.7 ? C4 ANP 402 A 1 # _model_server_stats.io_time_ms 68 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 249 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 31 #