data_6G7J # _model_server_result.job_id GXeEme6Xmw7m41l5zP0F0w _model_server_result.datetime_utc '2024-11-08 06:45:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6g7j # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 6G7J # _exptl.entry_id 6G7J _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 284.436 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description RETINAL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6G7J _cell.length_a 62.32 _cell.length_b 62.32 _cell.length_c 111.1 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6G7J _symmetry.cell_setting ? _symmetry.Int_Tables_number 173 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -y+1,x-y+1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 31.16 53.970703 0 3 'crystal symmetry operation' 3_565 -x+y,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 -31.16 53.970703 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NZ _struct_conn.ptnr1_label_comp_id LYS _struct_conn.ptnr1_label_seq_id 229 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id LYS _struct_conn.ptnr1_auth_seq_id 216 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C15 _struct_conn.ptnr2_label_comp_id RET _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id RET _struct_conn.ptnr2_auth_seq_id 301 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.346 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C20 H28 O' _chem_comp.formula_weight 284.436 _chem_comp.id RET _chem_comp.mon_nstd_flag . _chem_comp.name RETINAL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 RET sing 437 n n C1 C6 RET sing 438 n n C1 C16 RET sing 439 n n C1 C17 RET sing 440 n n C2 C3 RET sing 441 n n C2 H21 RET sing 442 n n C2 H22 RET sing 443 n n C3 C4 RET sing 444 n n C3 H31 RET sing 445 n n C3 H32 RET sing 446 n n C4 C5 RET sing 447 n n C4 H41 RET sing 448 n n C4 H42 RET sing 449 n n C5 C6 RET doub 450 n n C5 C18 RET sing 451 n n C6 C7 RET sing 452 n n C7 C8 RET doub 453 e n C7 H7 RET sing 454 n n C8 C9 RET sing 455 n n C8 H8 RET sing 456 n n C9 C10 RET doub 457 e n C9 C19 RET sing 458 n n C10 C11 RET sing 459 n n C10 H10 RET sing 460 n n C11 C12 RET doub 461 e n C11 H11 RET sing 462 n n C12 C13 RET sing 463 n n C12 H12 RET sing 464 n n C13 C14 RET doub 465 e n C13 C20 RET sing 466 n n C14 C15 RET sing 467 n n C14 H14 RET sing 468 n n C15 O1 RET doub 469 n n C15 H15 RET sing 470 n n C16 H161 RET sing 471 n n C16 H162 RET sing 472 n n C16 H163 RET sing 473 n n C17 H171 RET sing 474 n n C17 H172 RET sing 475 n n C17 H173 RET sing 476 n n C18 H181 RET sing 477 n n C18 H182 RET sing 478 n n C18 H183 RET sing 479 n n C19 H191 RET sing 480 n n C19 H192 RET sing 481 n n C19 H193 RET sing 482 n n C20 H201 RET sing 483 n n C20 H202 RET sing 484 n n C20 H203 RET sing 485 n n # _atom_sites.entry_id 6G7J _atom_sites.fract_transf_matrix[1][1] 0.016046 _atom_sites.fract_transf_matrix[1][2] 0.009264 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018529 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009001 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 RET A 1 301 301 RET RES . C 3 LI1 A 1 302 615 LI1 LI1 . D 3 LI1 A 1 303 618 LI1 LI1 . E 3 LI1 A 1 304 601 LI1 LI1 . F 3 LI1 A 1 305 606 LI1 LI1 . G 3 LI1 A 1 306 607 LI1 LI1 . H 3 LI1 A 1 307 609 LI1 LI1 . I 3 LI1 A 1 308 610 LI1 LI1 . J 4 OLC A 1 309 2 OLC XXX . K 4 OLC A 1 310 3 OLC XXX . L 4 OLC A 1 311 4 OLC XXX . M 4 OLC A 1 312 5 OLC XXX . N 5 HOH A 1 401 4 HOH HOH . N 5 HOH A 2 402 27 HOH HOH . N 5 HOH A 3 403 9 HOH HOH . N 5 HOH A 4 404 438 HOH HOH . N 5 HOH A 5 405 33 HOH HOH . N 5 HOH A 6 406 28 HOH HOH . N 5 HOH A 7 407 11 HOH HOH . N 5 HOH A 8 408 414 HOH HOH . N 5 HOH A 9 409 1 HOH HOH . N 5 HOH A 10 410 26 HOH HOH . N 5 HOH A 11 411 5 HOH HOH . N 5 HOH A 12 412 31 HOH HOH . N 5 HOH A 13 413 12 HOH HOH . N 5 HOH A 14 414 24 HOH HOH . N 5 HOH A 15 415 13 HOH HOH . N 5 HOH A 16 416 424 HOH HOH . N 5 HOH A 17 417 433 HOH HOH . N 5 HOH A 18 418 35 HOH HOH . N 5 HOH A 19 419 3 HOH HOH . N 5 HOH A 20 420 441 HOH HOH . N 5 HOH A 21 421 401 HOH HOH . N 5 HOH A 22 422 25 HOH HOH . N 5 HOH A 23 423 442 HOH HOH . N 5 HOH A 24 424 405 HOH HOH . N 5 HOH A 25 425 20 HOH HOH . N 5 HOH A 26 426 443 HOH HOH . N 5 HOH A 27 427 402 HOH HOH . N 5 HOH A 28 428 45 HOH HOH . N 5 HOH A 29 429 7 HOH HOH . N 5 HOH A 30 430 425 HOH HOH . N 5 HOH A 31 431 408 HOH HOH . N 5 HOH A 32 432 403 HOH HOH . N 5 HOH A 33 433 2 HOH HOH . N 5 HOH A 34 434 19 HOH HOH . N 5 HOH A 35 435 15 HOH HOH . N 5 HOH A 36 436 407 HOH HOH . N 5 HOH A 37 437 406 HOH HOH . N 5 HOH A 38 438 23 HOH HOH . N 5 HOH A 39 439 404 HOH HOH . N 5 HOH A 40 440 400 HOH HOH . N 5 HOH A 41 441 32 HOH HOH . N 5 HOH A 42 442 6 HOH HOH . N 5 HOH A 43 443 16 HOH HOH . N 5 HOH A 44 444 22 HOH HOH . N 5 HOH A 45 445 36 HOH HOH . N 5 HOH A 46 446 18 HOH HOH . N 5 HOH A 47 447 10 HOH HOH . N 5 HOH A 48 448 40 HOH HOH . N 5 HOH A 49 449 8 HOH HOH . N 5 HOH A 50 450 14 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 RET . . . B 2 15.084 46.11 29.819 1 33.79 ? C1 RET 301 A 1 HETATM 2 C C2 RET . . . B 2 15.175 46.954 28.553 1 39.24 ? C2 RET 301 A 1 HETATM 3 C C3 RET . . . B 2 14.386 48.247 28.656 1 38.37 ? C3 RET 301 A 1 HETATM 4 C C4 RET . . . B 2 14.833 49.094 29.829 1 33.83 ? C4 RET 301 A 1 HETATM 5 C C5 RET . . . B 2 15.094 48.276 31.073 1 34.9 ? C5 RET 301 A 1 HETATM 6 C C6 RET . . . B 2 15.249 46.935 31.077 1 29.75 ? C6 RET 301 A 1 HETATM 7 C C7 RET . . . B 2 15.528 46.301 32.394 1 30.79 ? C7 RET 301 A 1 HETATM 8 C C8 RET . . . B 2 15.604 44.975 32.593 1 32.01 ? C8 RET 301 A 1 HETATM 9 C C9 RET . . . B 2 16.275 44.299 33.711 1 35.06 ? C9 RET 301 A 1 HETATM 10 C C10 RET . . . B 2 16.344 42.936 33.697 1 36.64 ? C10 RET 301 A 1 HETATM 11 C C11 RET . . . B 2 17.005 42.192 34.779 1 33.54 ? C11 RET 301 A 1 HETATM 12 C C12 RET . . . B 2 17.165 40.838 34.662 1 36.28 ? C12 RET 301 A 1 HETATM 13 C C13 RET . . . B 2 18.039 39.95 35.468 1 43.5 ? C13 RET 301 A 1 HETATM 14 C C14 RET . . . B 2 18.459 38.692 35.153 1 41.46 ? C14 RET 301 A 1 HETATM 15 C C15 RET . . . B 2 17.641 37.511 35.38 1 44.36 ? C15 RET 301 A 1 HETATM 16 C C16 RET . . . B 2 13.727 45.379 29.932 1 34.83 ? C16 RET 301 A 1 HETATM 17 C C17 RET . . . B 2 16.161 45.058 29.657 1 31.65 ? C17 RET 301 A 1 HETATM 18 C C18 RET . . . B 2 15.221 49.053 32.351 1 34.77 ? C18 RET 301 A 1 HETATM 19 C C19 RET . . . B 2 16.871 45.085 34.877 1 31.93 ? C19 RET 301 A 1 HETATM 20 C C20 RET . . . B 2 18.81 40.597 36.584 1 40.3 ? C20 RET 301 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 323 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 20 #