data_6G7J # _model_server_result.job_id kTEOAm7RsU4O1MvpPHqeFw _model_server_result.datetime_utc '2024-11-08 06:46:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6g7j # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":309}' # _entry.id 6G7J # _exptl.entry_id 6G7J _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.54 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6G7J _cell.length_a 62.32 _cell.length_b 62.32 _cell.length_c 111.1 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6G7J _symmetry.cell_setting ? _symmetry.Int_Tables_number 173 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -y+1,x-y+1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 31.16 53.970703 0 3 'crystal symmetry operation' 3_565 -x+y,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 -31.16 53.970703 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 J N N ? 4 K N N ? 4 L N N ? 4 M N N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NZ _struct_conn.ptnr1_label_comp_id LYS _struct_conn.ptnr1_label_seq_id 229 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id LYS _struct_conn.ptnr1_auth_seq_id 216 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C15 _struct_conn.ptnr2_label_comp_id RET _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id RET _struct_conn.ptnr2_auth_seq_id 301 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.346 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C21 H40 O4' _chem_comp.formula_weight 356.54 _chem_comp.id OLC _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1-Oleoyl-R-glycerol # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C18 C17 OLC sing 333 n n C10 C9 OLC doub 334 n n C10 C11 OLC sing 335 n n C9 C8 OLC sing 336 n n C17 C16 OLC sing 337 z n C11 C12 OLC sing 338 n n C8 C7 OLC sing 339 n n C24 C22 OLC sing 340 n n C24 O25 OLC sing 341 n n C16 C15 OLC sing 342 n n C12 C13 OLC sing 343 n n C7 C6 OLC sing 344 n n C15 C14 OLC sing 345 n n C13 C14 OLC sing 346 n n C6 C5 OLC sing 347 n n C5 C4 OLC sing 348 n n C4 C3 OLC sing 349 n n C3 C2 OLC sing 350 n n C2 C1 OLC sing 351 n n C21 C22 OLC sing 352 n n C21 O20 OLC sing 353 n n C1 O19 OLC doub 354 n n C1 O20 OLC sing 355 n n C22 O23 OLC sing 356 n n C18 H18 OLC sing 357 n n C18 H18A OLC sing 358 n n C18 H18B OLC sing 359 n n C10 H10 OLC sing 360 n n C9 H9 OLC sing 361 n n C17 H17 OLC sing 362 n n C17 H17A OLC sing 363 n n C11 H11 OLC sing 364 n n C11 H11A OLC sing 365 n n C8 H8 OLC sing 366 n n C8 H8A OLC sing 367 n n C24 H24 OLC sing 368 n n C24 H24A OLC sing 369 n n C16 H16 OLC sing 370 n n C16 H16A OLC sing 371 n n C12 H12 OLC sing 372 n n C12 H12A OLC sing 373 n n C7 H7 OLC sing 374 n n C7 H7A OLC sing 375 n n C15 H15 OLC sing 376 n n C15 H15A OLC sing 377 n n C13 H13 OLC sing 378 n n C13 H13A OLC sing 379 n n C6 H6 OLC sing 380 n n C6 H6A OLC sing 381 n n C14 H14 OLC sing 382 n n C14 H14A OLC sing 383 n n C5 H5 OLC sing 384 n n C5 H5A OLC sing 385 n n C4 H4 OLC sing 386 n n C4 H4A OLC sing 387 n n C3 H3 OLC sing 388 n n C3 H3A OLC sing 389 n n C2 H2 OLC sing 390 n n C2 H2A OLC sing 391 n n C21 H21 OLC sing 392 n n C21 H21A OLC sing 393 n n C22 H22 OLC sing 394 n n O25 HO25 OLC sing 395 n n O23 HO23 OLC sing 396 n n # _atom_sites.entry_id 6G7J _atom_sites.fract_transf_matrix[1][1] 0.016046 _atom_sites.fract_transf_matrix[1][2] 0.009264 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018529 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009001 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 RET A 1 301 301 RET RES . C 3 LI1 A 1 302 615 LI1 LI1 . D 3 LI1 A 1 303 618 LI1 LI1 . E 3 LI1 A 1 304 601 LI1 LI1 . F 3 LI1 A 1 305 606 LI1 LI1 . G 3 LI1 A 1 306 607 LI1 LI1 . H 3 LI1 A 1 307 609 LI1 LI1 . I 3 LI1 A 1 308 610 LI1 LI1 . J 4 OLC A 1 309 2 OLC XXX . K 4 OLC A 1 310 3 OLC XXX . L 4 OLC A 1 311 4 OLC XXX . M 4 OLC A 1 312 5 OLC XXX . N 5 HOH A 1 401 4 HOH HOH . N 5 HOH A 2 402 27 HOH HOH . N 5 HOH A 3 403 9 HOH HOH . N 5 HOH A 4 404 438 HOH HOH . N 5 HOH A 5 405 33 HOH HOH . N 5 HOH A 6 406 28 HOH HOH . N 5 HOH A 7 407 11 HOH HOH . N 5 HOH A 8 408 414 HOH HOH . N 5 HOH A 9 409 1 HOH HOH . N 5 HOH A 10 410 26 HOH HOH . N 5 HOH A 11 411 5 HOH HOH . N 5 HOH A 12 412 31 HOH HOH . N 5 HOH A 13 413 12 HOH HOH . N 5 HOH A 14 414 24 HOH HOH . N 5 HOH A 15 415 13 HOH HOH . N 5 HOH A 16 416 424 HOH HOH . N 5 HOH A 17 417 433 HOH HOH . N 5 HOH A 18 418 35 HOH HOH . N 5 HOH A 19 419 3 HOH HOH . N 5 HOH A 20 420 441 HOH HOH . N 5 HOH A 21 421 401 HOH HOH . N 5 HOH A 22 422 25 HOH HOH . N 5 HOH A 23 423 442 HOH HOH . N 5 HOH A 24 424 405 HOH HOH . N 5 HOH A 25 425 20 HOH HOH . N 5 HOH A 26 426 443 HOH HOH . N 5 HOH A 27 427 402 HOH HOH . N 5 HOH A 28 428 45 HOH HOH . N 5 HOH A 29 429 7 HOH HOH . N 5 HOH A 30 430 425 HOH HOH . N 5 HOH A 31 431 408 HOH HOH . N 5 HOH A 32 432 403 HOH HOH . N 5 HOH A 33 433 2 HOH HOH . N 5 HOH A 34 434 19 HOH HOH . N 5 HOH A 35 435 15 HOH HOH . N 5 HOH A 36 436 407 HOH HOH . N 5 HOH A 37 437 406 HOH HOH . N 5 HOH A 38 438 23 HOH HOH . N 5 HOH A 39 439 404 HOH HOH . N 5 HOH A 40 440 400 HOH HOH . N 5 HOH A 41 441 32 HOH HOH . N 5 HOH A 42 442 6 HOH HOH . N 5 HOH A 43 443 16 HOH HOH . N 5 HOH A 44 444 22 HOH HOH . N 5 HOH A 45 445 36 HOH HOH . N 5 HOH A 46 446 18 HOH HOH . N 5 HOH A 47 447 10 HOH HOH . N 5 HOH A 48 448 40 HOH HOH . N 5 HOH A 49 449 8 HOH HOH . N 5 HOH A 50 450 14 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C18 OLC . . . J 4 20.179 19.396 33.577 1 64.09 ? C18 OLC 309 A 1 HETATM 2 C C10 OLC . . . J 4 12.453 20.742 35.778 1 43.98 ? C10 OLC 309 A 1 HETATM 3 C C9 OLC . . . J 4 11.925 20.578 36.975 1 52.82 ? C9 OLC 309 A 1 HETATM 4 C C17 OLC . . . J 4 18.903 19.39 34.382 1 58.06 ? C17 OLC 309 A 1 HETATM 5 C C11 OLC . . . J 4 13.019 21.993 35.164 1 50.85 ? C11 OLC 309 A 1 HETATM 6 C C8 OLC . . . J 4 11.737 21.584 38.081 1 52.08 ? C8 OLC 309 A 1 HETATM 7 C C24 OLC . . . J 4 10.826 23.123 49.293 1 61 ? C24 OLC 309 A 1 HETATM 8 C C16 OLC . . . J 4 17.843 20.277 33.798 1 52 ? C16 OLC 309 A 1 HETATM 9 C C12 OLC . . . J 4 14.482 22.181 35.552 1 55.15 ? C12 OLC 309 A 1 HETATM 10 C C7 OLC . . . J 4 11.993 20.939 39.439 1 66.01 ? C7 OLC 309 A 1 HETATM 11 C C15 OLC . . . J 4 17.518 21.464 34.681 1 51.46 ? C15 OLC 309 A 1 HETATM 12 C C13 OLC . . . J 4 15.262 20.882 35.564 1 62.23 ? C13 OLC 309 A 1 HETATM 13 C C6 OLC . . . J 4 11.477 21.705 40.663 1 52.25 ? C6 OLC 309 A 1 HETATM 14 C C14 OLC . . . J 4 16.721 21.057 35.874 1 57.14 ? C14 OLC 309 A 1 HETATM 15 C C5 OLC . . . J 4 12.048 23.087 40.832 1 49.97 ? C5 OLC 309 A 1 HETATM 16 C C4 OLC . . . J 4 11.689 23.729 42.159 1 45.41 ? C4 OLC 309 A 1 HETATM 17 C C3 OLC . . . J 4 12.532 23.297 43.333 1 46.83 ? C3 OLC 309 A 1 HETATM 18 C C2 OLC . . . J 4 12.124 24.021 44.606 1 47.34 ? C2 OLC 309 A 1 HETATM 19 C C21 OLC . . . J 4 13.039 23.372 48.115 1 49.65 ? C21 OLC 309 A 1 HETATM 20 C C1 OLC . . . J 4 13.004 23.722 45.78 1 42.76 ? C1 OLC 309 A 1 HETATM 21 C C22 OLC . . . J 4 12.196 23.769 49.304 1 49.62 ? C22 OLC 309 A 1 HETATM 22 O O19 OLC . . . J 4 14.17 23.451 45.707 1 49.32 ? O19 OLC 309 A 1 HETATM 23 O O25 OLC . . . J 4 10.422 22.722 50.6 1 55.7 ? O25 OLC 309 A 1 HETATM 24 O O23 OLC . . . J 4 12.9 23.37 50.479 1 59.94 ? O23 OLC 309 A 1 HETATM 25 O O20 OLC . . . J 4 12.327 23.778 46.923 1 47.95 ? O20 OLC 309 A 1 HETATM 26 H H18 OLC . . . J 4 20.618 20.39 33.507 1 76.91 ? H18 OLC 309 A 1 HETATM 27 H H18A OLC . . . J 4 20.942 18.749 34.006 1 76.91 ? H18A OLC 309 A 1 HETATM 28 H H18B OLC . . . J 4 20.01 19.054 32.557 1 76.91 ? H18B OLC 309 A 1 HETATM 29 H H10 OLC . . . J 4 12.501 19.875 35.12 1 52.78 ? H10 OLC 309 A 1 HETATM 30 H H9 OLC . . . J 4 11.562 19.583 37.231 1 63.38 ? H9 OLC 309 A 1 HETATM 31 H H17 OLC . . . J 4 19.111 19.687 35.409 1 69.67 ? H17 OLC 309 A 1 HETATM 32 H H17A OLC . . . J 4 18.523 18.373 34.462 1 69.67 ? H17A OLC 309 A 1 HETATM 33 H H11 OLC . . . J 4 12.915 21.934 34.081 1 61.03 ? H11 OLC 309 A 1 HETATM 34 H H11A OLC . . . J 4 12.43 22.86 35.46 1 61.03 ? H11A OLC 309 A 1 HETATM 35 H H8 OLC . . . J 4 10.731 21.998 38.035 1 62.5 ? H8 OLC 309 A 1 HETATM 36 H H8A OLC . . . J 4 12.406 22.429 37.922 1 62.5 ? H8A OLC 309 A 1 HETATM 37 H H24 OLC . . . J 4 10.841 22.264 48.625 1 73.21 ? H24 OLC 309 A 1 HETATM 38 H H24A OLC . . . J 4 10.086 23.807 48.879 1 73.21 ? H24A OLC 309 A 1 HETATM 39 H H16 OLC . . . J 4 18.149 20.626 32.813 1 62.4 ? H16 OLC 309 A 1 HETATM 40 H H16A OLC . . . J 4 16.94 19.698 33.611 1 62.4 ? H16A OLC 309 A 1 HETATM 41 H H12 OLC . . . J 4 14.951 22.89 34.871 1 66.18 ? H12 OLC 309 A 1 HETATM 42 H H12A OLC . . . J 4 14.546 22.652 36.532 1 66.18 ? H12A OLC 309 A 1 HETATM 43 H H7 OLC . . . J 4 11.55 19.945 39.436 1 79.21 ? H7 OLC 309 A 1 HETATM 44 H H7A OLC . . . J 4 13.06 20.754 39.557 1 79.21 ? H7A OLC 309 A 1 HETATM 45 H H15 OLC . . . J 4 16.975 22.214 34.108 1 61.75 ? H15 OLC 309 A 1 HETATM 46 H H15A OLC . . . J 4 18.435 21.96 34.995 1 61.75 ? H15A OLC 309 A 1 HETATM 47 H H13 OLC . . . J 4 15.153 20.385 34.601 1 74.67 ? H13 OLC 309 A 1 HETATM 48 H H13A OLC . . . J 4 14.815 20.192 36.277 1 74.67 ? H13A OLC 309 A 1 HETATM 49 H H6 OLC . . . J 4 10.392 21.772 40.616 1 62.7 ? H6 OLC 309 A 1 HETATM 50 H H6A OLC . . . J 4 11.671 21.114 41.557 1 62.7 ? H6A OLC 309 A 1 HETATM 51 H H14 OLC . . . J 4 16.84 21.792 36.669 1 68.56 ? H14 OLC 309 A 1 HETATM 52 H H14A OLC . . . J 4 17.122 20.135 36.293 1 68.56 ? H14A OLC 309 A 1 HETATM 53 H H5 OLC . . . J 4 11.706 23.726 40.019 1 59.97 ? H5 OLC 309 A 1 HETATM 54 H H5A OLC . . . J 4 13.13 23.051 40.717 1 59.97 ? H5A OLC 309 A 1 HETATM 55 H H4 OLC . . . J 4 11.756 24.811 42.054 1 54.5 ? H4 OLC 309 A 1 HETATM 56 H H4A OLC . . . J 4 10.636 23.543 42.369 1 54.5 ? H4A OLC 309 A 1 HETATM 57 H H3 OLC . . . J 4 12.467 22.221 43.485 1 56.2 ? H3 OLC 309 A 1 HETATM 58 H H3A OLC . . . J 4 13.585 23.486 43.132 1 56.2 ? H3A OLC 309 A 1 HETATM 59 H H2 OLC . . . J 4 12.154 25.096 44.433 1 56.81 ? H2 OLC 309 A 1 HETATM 60 H H2A OLC . . . J 4 11.082 23.806 44.84 1 56.81 ? H2A OLC 309 A 1 HETATM 61 H H21 OLC . . . J 4 14 23.884 48.12 1 59.58 ? H21 OLC 309 A 1 HETATM 62 H H21A OLC . . . J 4 13.255 22.305 48.125 1 59.58 ? H21A OLC 309 A 1 HETATM 63 H H22 OLC . . . J 4 12.082 24.852 49.305 1 59.54 ? H22 OLC 309 A 1 HETATM 64 H HO25 OLC . . . J 4 10.804 21.817 50.74 1 66.84 ? HO25 OLC 309 A 1 HETATM 65 H HO23 OLC . . . J 4 13.031 24.194 51.017 1 71.93 ? HO23 OLC 309 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 65 #