data_6G7K # _model_server_result.job_id Keq5VfRl2XTAFdmqnW5hSg _model_server_result.datetime_utc '2024-11-21 14:09:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6g7k # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":309}' # _entry.id 6G7K # _exptl.entry_id 6G7K _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.54 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6G7K _cell.length_a 62.32 _cell.length_b 62.32 _cell.length_c 111.1 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6G7K _symmetry.cell_setting ? _symmetry.Int_Tables_number 173 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -y+1,x-y+1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 31.16 53.970703 0 3 'crystal symmetry operation' 3_565 -x+y,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 -31.16 53.970703 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 J N N ? 4 K N N ? 4 L N N ? 4 M N N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NZ _struct_conn.ptnr1_label_comp_id LYS _struct_conn.ptnr1_label_seq_id 229 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id LYS _struct_conn.ptnr1_auth_seq_id 216 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C15 _struct_conn.ptnr2_label_comp_id RET _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id RET _struct_conn.ptnr2_auth_seq_id 301 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.326 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C21 H40 O4' _chem_comp.formula_weight 356.54 _chem_comp.id OLC _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1-Oleoyl-R-glycerol # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C18 C17 OLC sing 333 n n C10 C9 OLC doub 334 n n C10 C11 OLC sing 335 n n C9 C8 OLC sing 336 n n C17 C16 OLC sing 337 z n C11 C12 OLC sing 338 n n C8 C7 OLC sing 339 n n C24 C22 OLC sing 340 n n C24 O25 OLC sing 341 n n C16 C15 OLC sing 342 n n C12 C13 OLC sing 343 n n C7 C6 OLC sing 344 n n C15 C14 OLC sing 345 n n C13 C14 OLC sing 346 n n C6 C5 OLC sing 347 n n C5 C4 OLC sing 348 n n C4 C3 OLC sing 349 n n C3 C2 OLC sing 350 n n C2 C1 OLC sing 351 n n C21 C22 OLC sing 352 n n C21 O20 OLC sing 353 n n C1 O19 OLC doub 354 n n C1 O20 OLC sing 355 n n C22 O23 OLC sing 356 n n C18 H18 OLC sing 357 n n C18 H18A OLC sing 358 n n C18 H18B OLC sing 359 n n C10 H10 OLC sing 360 n n C9 H9 OLC sing 361 n n C17 H17 OLC sing 362 n n C17 H17A OLC sing 363 n n C11 H11 OLC sing 364 n n C11 H11A OLC sing 365 n n C8 H8 OLC sing 366 n n C8 H8A OLC sing 367 n n C24 H24 OLC sing 368 n n C24 H24A OLC sing 369 n n C16 H16 OLC sing 370 n n C16 H16A OLC sing 371 n n C12 H12 OLC sing 372 n n C12 H12A OLC sing 373 n n C7 H7 OLC sing 374 n n C7 H7A OLC sing 375 n n C15 H15 OLC sing 376 n n C15 H15A OLC sing 377 n n C13 H13 OLC sing 378 n n C13 H13A OLC sing 379 n n C6 H6 OLC sing 380 n n C6 H6A OLC sing 381 n n C14 H14 OLC sing 382 n n C14 H14A OLC sing 383 n n C5 H5 OLC sing 384 n n C5 H5A OLC sing 385 n n C4 H4 OLC sing 386 n n C4 H4A OLC sing 387 n n C3 H3 OLC sing 388 n n C3 H3A OLC sing 389 n n C2 H2 OLC sing 390 n n C2 H2A OLC sing 391 n n C21 H21 OLC sing 392 n n C21 H21A OLC sing 393 n n C22 H22 OLC sing 394 n n O25 HO25 OLC sing 395 n n O23 HO23 OLC sing 396 n n # _atom_sites.entry_id 6G7K _atom_sites.fract_transf_matrix[1][1] 0.016046 _atom_sites.fract_transf_matrix[1][2] 0.009264 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018529 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009001 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 RET A 1 301 301 RET RET . C 3 LI1 A 1 302 615 LI1 LI1 . D 3 LI1 A 1 303 618 LI1 LI1 . E 3 LI1 A 1 304 601 LI1 LI1 . F 3 LI1 A 1 305 606 LI1 LI1 . G 3 LI1 A 1 306 607 LI1 LI1 . H 3 LI1 A 1 307 609 LI1 LI1 . I 3 LI1 A 1 308 610 LI1 LI1 . J 4 OLC A 1 309 2 OLC XXX . K 4 OLC A 1 310 3 OLC XXX . L 4 OLC A 1 311 4 OLC XXX . M 4 OLC A 1 312 5 OLC XXX . N 5 HOH A 1 401 400 HOH HOH . N 5 HOH A 2 402 441 HOH HOH . N 5 HOH A 3 403 442 HOH HOH . N 5 HOH A 4 404 414 HOH HOH . N 5 HOH A 5 405 402 HOH HOH . N 5 HOH A 6 406 1 HOH HOH . N 5 HOH A 7 407 425 HOH HOH . N 5 HOH A 8 408 424 HOH HOH . N 5 HOH A 9 409 443 HOH HOH . N 5 HOH A 10 410 438 HOH HOH . N 5 HOH A 11 411 433 HOH HOH . N 5 HOH A 12 412 401 HOH HOH . N 5 HOH A 13 413 408 HOH HOH . N 5 HOH A 14 414 4 HOH HOH . N 5 HOH A 15 415 33 HOH HOH . N 5 HOH A 16 416 24 HOH HOH . N 5 HOH A 17 417 29 HOH HOH . N 5 HOH A 18 418 13 HOH HOH . N 5 HOH A 19 419 26 HOH HOH . N 5 HOH A 20 420 20 HOH HOH . N 5 HOH A 21 421 5 HOH HOH . N 5 HOH A 22 422 35 HOH HOH . N 5 HOH A 23 423 3 HOH HOH . N 5 HOH A 24 424 11 HOH HOH . N 5 HOH A 25 425 7 HOH HOH . N 5 HOH A 26 426 403 HOH HOH . N 5 HOH A 27 427 405 HOH HOH . N 5 HOH A 28 428 31 HOH HOH . N 5 HOH A 29 429 9 HOH HOH . N 5 HOH A 30 430 28 HOH HOH . N 5 HOH A 31 431 15 HOH HOH . N 5 HOH A 32 432 40 HOH HOH . N 5 HOH A 33 433 21 HOH HOH . N 5 HOH A 34 434 45 HOH HOH . N 5 HOH A 35 435 36 HOH HOH . N 5 HOH A 36 436 23 HOH HOH . N 5 HOH A 37 437 25 HOH HOH . N 5 HOH A 38 438 404 HOH HOH . N 5 HOH A 39 439 12 HOH HOH . N 5 HOH A 40 440 406 HOH HOH . N 5 HOH A 41 441 16 HOH HOH . N 5 HOH A 42 442 44 HOH HOH . N 5 HOH A 43 443 22 HOH HOH . N 5 HOH A 44 444 41 HOH HOH . N 5 HOH A 45 445 8 HOH HOH . N 5 HOH A 46 446 14 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C18 OLC . . . J 4 20.452 19.671 33.142 1 37.09 ? C18 OLC 309 A 1 HETATM 2 C C10 OLC . . . J 4 12.379 20.526 36.009 1 32.77 ? C10 OLC 309 A 1 HETATM 3 C C9 OLC . . . J 4 11.949 20.528 37.259 1 30.85 ? C9 OLC 309 A 1 HETATM 4 C C17 OLC . . . J 4 19.476 20.037 34.222 1 32.78 ? C17 OLC 309 A 1 HETATM 5 C C11 OLC . . . J 4 12.899 21.691 35.226 1 36.2 ? C11 OLC 309 A 1 HETATM 6 C C8 OLC . . . J 4 11.865 21.693 38.199 1 35.17 ? C8 OLC 309 A 1 HETATM 7 C C24 OLC . . . J 4 10.991 22.638 49.087 1 38.1 ? C24 OLC 309 A 1 HETATM 8 C C16 OLC . . . J 4 18.456 21.061 33.768 1 32.39 ? C16 OLC 309 A 1 HETATM 9 C C12 OLC . . . J 4 14.413 21.842 35.349 1 36.27 ? C12 OLC 309 A 1 HETATM 10 C C7 OLC . . . J 4 12.666 21.428 39.467 1 35.43 ? C7 OLC 309 A 1 HETATM 11 C C15 OLC . . . J 4 17.569 21.577 34.887 1 28.08 ? C15 OLC 309 A 1 HETATM 12 C C13 OLC . . . J 4 15.2 20.649 34.824 1 35.28 ? C13 OLC 309 A 1 HETATM 13 C C6 OLC . . . J 4 12.076 22.029 40.731 1 33.27 ? C6 OLC 309 A 1 HETATM 14 C C14 OLC . . . J 4 16.593 20.543 35.412 1 35.54 ? C14 OLC 309 A 1 HETATM 15 C C5 OLC . . . J 4 12.17 23.54 40.815 1 30.57 ? C5 OLC 309 A 1 HETATM 16 C C4 OLC . . . J 4 11.725 24.11 42.157 1 28.3 ? C4 OLC 309 A 1 HETATM 17 C C3 OLC . . . J 4 12.583 23.664 43.339 1 28.44 ? C3 OLC 309 A 1 HETATM 18 C C2 OLC . . . J 4 12.274 24.421 44.623 1 29.17 ? C2 OLC 309 A 1 HETATM 19 C C21 OLC . . . J 4 13.15 23.396 48.057 1 33.56 ? C21 OLC 309 A 1 HETATM 20 C C1 OLC . . . J 4 13.139 24.01 45.779 1 29.49 ? C1 OLC 309 A 1 HETATM 21 C C22 OLC . . . J 4 12.165 23.585 49.184 1 34.65 ? C22 OLC 309 A 1 HETATM 22 O O19 OLC . . . J 4 14.336 23.917 45.744 1 33.15 ? O19 OLC 309 A 1 HETATM 23 O O25 OLC . . . J 4 10.112 22.806 50.191 1 35.74 ? O25 OLC 309 A 1 HETATM 24 O O23 OLC . . . J 4 12.84 23.394 50.43 1 39.64 ? O23 OLC 309 A 1 HETATM 25 O O20 OLC . . . J 4 12.414 23.759 46.867 1 32.06 ? O20 OLC 309 A 1 HETATM 26 H H18 OLC . . . J 4 21.02 20.531 32.79 1 44.51 ? H18 OLC 309 A 1 HETATM 27 H H18A OLC . . . J 4 21.18 18.933 33.476 1 44.51 ? H18A OLC 309 A 1 HETATM 28 H H18B OLC . . . J 4 19.949 19.249 32.274 1 44.51 ? H18B OLC 309 A 1 HETATM 29 H H10 OLC . . . J 4 12.368 19.587 35.457 1 39.33 ? H10 OLC 309 A 1 HETATM 30 H H9 OLC . . . J 4 11.607 19.586 37.687 1 37.02 ? H9 OLC 309 A 1 HETATM 31 H H17 OLC . . . J 4 20.011 20.407 35.095 1 39.33 ? H17 OLC 309 A 1 HETATM 32 H H17A OLC . . . J 4 18.963 19.142 34.572 1 39.33 ? H17A OLC 309 A 1 HETATM 33 H H11 OLC . . . J 4 12.616 21.564 34.182 1 43.44 ? H11 OLC 309 A 1 HETATM 34 H H11A OLC . . . J 4 12.401 22.606 35.543 1 43.44 ? H11A OLC 309 A 1 HETATM 35 H H8 OLC . . . J 4 10.822 21.895 38.44 1 42.2 ? H8 OLC 309 A 1 HETATM 36 H H8A OLC . . . J 4 12.224 22.59 37.698 1 42.2 ? H8A OLC 309 A 1 HETATM 37 H H24 OLC . . . J 4 11.358 21.613 49.047 1 45.71 ? H24 OLC 309 A 1 HETATM 38 H H24A OLC . . . J 4 10.446 22.796 48.158 1 45.71 ? H24A OLC 309 A 1 HETATM 39 H H16 OLC . . . J 4 18.96 21.9 33.29 1 38.87 ? H16 OLC 309 A 1 HETATM 40 H H16A OLC . . . J 4 17.838 20.636 32.979 1 38.87 ? H16A OLC 309 A 1 HETATM 41 H H12 OLC . . . J 4 14.727 22.746 34.83 1 43.52 ? H12 OLC 309 A 1 HETATM 42 H H12A OLC . . . J 4 14.679 22.017 36.391 1 43.52 ? H12A OLC 309 A 1 HETATM 43 H H7 OLC . . . J 4 12.766 20.351 39.598 1 42.52 ? H7 OLC 309 A 1 HETATM 44 H H7A OLC . . . J 4 13.688 21.782 39.339 1 42.52 ? H7A OLC 309 A 1 HETATM 45 H H15 OLC . . . J 4 17.022 22.453 34.542 1 33.7 ? H15 OLC 309 A 1 HETATM 46 H H15A OLC . . . J 4 18.186 21.945 35.705 1 33.7 ? H15A OLC 309 A 1 HETATM 47 H H13 OLC . . . J 4 15.267 20.706 33.738 1 42.33 ? H13 OLC 309 A 1 HETATM 48 H H13A OLC . . . J 4 14.649 19.73 35.015 1 42.33 ? H13A OLC 309 A 1 HETATM 49 H H6 OLC . . . J 4 11.032 21.732 40.822 1 39.93 ? H6 OLC 309 A 1 HETATM 50 H H6A OLC . . . J 4 12.56 21.579 41.597 1 39.93 ? H6A OLC 309 A 1 HETATM 51 H H14 OLC . . . J 4 16.53 20.616 36.497 1 42.65 ? H14 OLC 309 A 1 HETATM 52 H H14A OLC . . . J 4 16.986 19.544 35.234 1 42.65 ? H14A OLC 309 A 1 HETATM 53 H H5 OLC . . . J 4 11.574 23.987 40.021 1 36.68 ? H5 OLC 309 A 1 HETATM 54 H H5A OLC . . . J 4 13.191 23.852 40.6 1 36.68 ? H5A OLC 309 A 1 HETATM 55 H H4 OLC . . . J 4 11.731 25.197 42.1 1 33.95 ? H4 OLC 309 A 1 HETATM 56 H H4A OLC . . . J 4 10.682 23.849 42.33 1 33.95 ? H4A OLC 309 A 1 HETATM 57 H H3 OLC . . . J 4 12.469 22.595 43.513 1 34.13 ? H3 OLC 309 A 1 HETATM 58 H H3A OLC . . . J 4 13.638 23.788 43.099 1 34.13 ? H3A OLC 309 A 1 HETATM 59 H H2 OLC . . . J 4 12.422 25.487 44.458 1 35 ? H2 OLC 309 A 1 HETATM 60 H H2A OLC . . . J 4 11.219 24.32 44.874 1 35 ? H2A OLC 309 A 1 HETATM 61 H H21 OLC . . . J 4 14.006 24.062 48.148 1 40.27 ? H21 OLC 309 A 1 HETATM 62 H H21A OLC . . . J 4 13.535 22.378 48.023 1 40.27 ? H21A OLC 309 A 1 HETATM 63 H H22 OLC . . . J 4 11.792 24.607 49.14 1 41.59 ? H22 OLC 309 A 1 HETATM 64 H HO25 OLC . . . J 4 10.476 22.24 50.921 1 42.89 ? HO25 OLC 309 A 1 HETATM 65 H HO23 OLC . . . J 4 12.77 24.257 50.918 1 47.57 ? HO23 OLC 309 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 633 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 65 #