data_6G7K # _model_server_result.job_id 0lRgeWVUhsOw3HoLEsD8dQ _model_server_result.datetime_utc '2024-11-08 05:42:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6g7k # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":310}' # _entry.id 6G7K # _exptl.entry_id 6G7K _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.54 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6G7K _cell.length_a 62.32 _cell.length_b 62.32 _cell.length_c 111.1 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6G7K _symmetry.cell_setting ? _symmetry.Int_Tables_number 173 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -y+1,x-y+1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 31.16 53.970703 0 3 'crystal symmetry operation' 3_565 -x+y,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 -31.16 53.970703 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 J N N ? 4 K N N ? 4 L N N ? 4 M N N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NZ _struct_conn.ptnr1_label_comp_id LYS _struct_conn.ptnr1_label_seq_id 229 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id LYS _struct_conn.ptnr1_auth_seq_id 216 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C15 _struct_conn.ptnr2_label_comp_id RET _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id RET _struct_conn.ptnr2_auth_seq_id 301 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.326 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C21 H40 O4' _chem_comp.formula_weight 356.54 _chem_comp.id OLC _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1-Oleoyl-R-glycerol # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C18 C17 OLC sing 333 n n C10 C9 OLC doub 334 n n C10 C11 OLC sing 335 n n C9 C8 OLC sing 336 n n C17 C16 OLC sing 337 z n C11 C12 OLC sing 338 n n C8 C7 OLC sing 339 n n C24 C22 OLC sing 340 n n C24 O25 OLC sing 341 n n C16 C15 OLC sing 342 n n C12 C13 OLC sing 343 n n C7 C6 OLC sing 344 n n C15 C14 OLC sing 345 n n C13 C14 OLC sing 346 n n C6 C5 OLC sing 347 n n C5 C4 OLC sing 348 n n C4 C3 OLC sing 349 n n C3 C2 OLC sing 350 n n C2 C1 OLC sing 351 n n C21 C22 OLC sing 352 n n C21 O20 OLC sing 353 n n C1 O19 OLC doub 354 n n C1 O20 OLC sing 355 n n C22 O23 OLC sing 356 n n C18 H18 OLC sing 357 n n C18 H18A OLC sing 358 n n C18 H18B OLC sing 359 n n C10 H10 OLC sing 360 n n C9 H9 OLC sing 361 n n C17 H17 OLC sing 362 n n C17 H17A OLC sing 363 n n C11 H11 OLC sing 364 n n C11 H11A OLC sing 365 n n C8 H8 OLC sing 366 n n C8 H8A OLC sing 367 n n C24 H24 OLC sing 368 n n C24 H24A OLC sing 369 n n C16 H16 OLC sing 370 n n C16 H16A OLC sing 371 n n C12 H12 OLC sing 372 n n C12 H12A OLC sing 373 n n C7 H7 OLC sing 374 n n C7 H7A OLC sing 375 n n C15 H15 OLC sing 376 n n C15 H15A OLC sing 377 n n C13 H13 OLC sing 378 n n C13 H13A OLC sing 379 n n C6 H6 OLC sing 380 n n C6 H6A OLC sing 381 n n C14 H14 OLC sing 382 n n C14 H14A OLC sing 383 n n C5 H5 OLC sing 384 n n C5 H5A OLC sing 385 n n C4 H4 OLC sing 386 n n C4 H4A OLC sing 387 n n C3 H3 OLC sing 388 n n C3 H3A OLC sing 389 n n C2 H2 OLC sing 390 n n C2 H2A OLC sing 391 n n C21 H21 OLC sing 392 n n C21 H21A OLC sing 393 n n C22 H22 OLC sing 394 n n O25 HO25 OLC sing 395 n n O23 HO23 OLC sing 396 n n # _atom_sites.entry_id 6G7K _atom_sites.fract_transf_matrix[1][1] 0.016046 _atom_sites.fract_transf_matrix[1][2] 0.009264 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018529 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009001 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 RET A 1 301 301 RET RET . C 3 LI1 A 1 302 615 LI1 LI1 . D 3 LI1 A 1 303 618 LI1 LI1 . E 3 LI1 A 1 304 601 LI1 LI1 . F 3 LI1 A 1 305 606 LI1 LI1 . G 3 LI1 A 1 306 607 LI1 LI1 . H 3 LI1 A 1 307 609 LI1 LI1 . I 3 LI1 A 1 308 610 LI1 LI1 . J 4 OLC A 1 309 2 OLC XXX . K 4 OLC A 1 310 3 OLC XXX . L 4 OLC A 1 311 4 OLC XXX . M 4 OLC A 1 312 5 OLC XXX . N 5 HOH A 1 401 400 HOH HOH . N 5 HOH A 2 402 441 HOH HOH . N 5 HOH A 3 403 442 HOH HOH . N 5 HOH A 4 404 414 HOH HOH . N 5 HOH A 5 405 402 HOH HOH . N 5 HOH A 6 406 1 HOH HOH . N 5 HOH A 7 407 425 HOH HOH . N 5 HOH A 8 408 424 HOH HOH . N 5 HOH A 9 409 443 HOH HOH . N 5 HOH A 10 410 438 HOH HOH . N 5 HOH A 11 411 433 HOH HOH . N 5 HOH A 12 412 401 HOH HOH . N 5 HOH A 13 413 408 HOH HOH . N 5 HOH A 14 414 4 HOH HOH . N 5 HOH A 15 415 33 HOH HOH . N 5 HOH A 16 416 24 HOH HOH . N 5 HOH A 17 417 29 HOH HOH . N 5 HOH A 18 418 13 HOH HOH . N 5 HOH A 19 419 26 HOH HOH . N 5 HOH A 20 420 20 HOH HOH . N 5 HOH A 21 421 5 HOH HOH . N 5 HOH A 22 422 35 HOH HOH . N 5 HOH A 23 423 3 HOH HOH . N 5 HOH A 24 424 11 HOH HOH . N 5 HOH A 25 425 7 HOH HOH . N 5 HOH A 26 426 403 HOH HOH . N 5 HOH A 27 427 405 HOH HOH . N 5 HOH A 28 428 31 HOH HOH . N 5 HOH A 29 429 9 HOH HOH . N 5 HOH A 30 430 28 HOH HOH . N 5 HOH A 31 431 15 HOH HOH . N 5 HOH A 32 432 40 HOH HOH . N 5 HOH A 33 433 21 HOH HOH . N 5 HOH A 34 434 45 HOH HOH . N 5 HOH A 35 435 36 HOH HOH . N 5 HOH A 36 436 23 HOH HOH . N 5 HOH A 37 437 25 HOH HOH . N 5 HOH A 38 438 404 HOH HOH . N 5 HOH A 39 439 12 HOH HOH . N 5 HOH A 40 440 406 HOH HOH . N 5 HOH A 41 441 16 HOH HOH . N 5 HOH A 42 442 44 HOH HOH . N 5 HOH A 43 443 22 HOH HOH . N 5 HOH A 44 444 41 HOH HOH . N 5 HOH A 45 445 8 HOH HOH . N 5 HOH A 46 446 14 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C18 OLC . . . K 4 5.795 32.071 41.994 1 42.6 ? C18 OLC 310 A 1 HETATM 2 C C10 OLC . . . K 4 8.06 29.186 32.699 1 31.23 ? C10 OLC 310 A 1 HETATM 3 C C9 OLC . . . K 4 8.016 28.662 31.491 1 34.78 ? C9 OLC 310 A 1 HETATM 4 C C17 OLC . . . K 4 5.396 32.23 40.536 1 46.51 ? C17 OLC 310 A 1 HETATM 5 C C11 OLC . . . K 4 6.944 29.864 33.439 1 29.92 ? C11 OLC 310 A 1 HETATM 6 C C8 OLC . . . K 4 6.842 28.631 30.567 1 35.74 ? C8 OLC 310 A 1 HETATM 7 C C24 OLC . . . K 4 4.842 32.202 19.327 1 52.63 ? C24 OLC 310 A 1 HETATM 8 C C16 OLC . . . K 4 6.052 31.201 39.637 1 41.29 ? C16 OLC 310 A 1 HETATM 9 C C12 OLC . . . K 4 7.083 29.649 34.944 1 27.89 ? C12 OLC 310 A 1 HETATM 10 C C7 OLC . . . K 4 6.789 29.787 29.568 1 40.65 ? C7 OLC 310 A 1 HETATM 11 C C15 OLC . . . K 4 5.67 31.311 38.169 1 37.97 ? C15 OLC 310 A 1 HETATM 12 C C13 OLC . . . K 4 6.149 30.481 35.795 1 30.47 ? C13 OLC 310 A 1 HETATM 13 C C6 OLC . . . K 4 5.816 29.536 28.428 1 38.09 ? C6 OLC 310 A 1 HETATM 14 C C14 OLC . . . K 4 6.412 30.325 37.286 1 33.27 ? C14 OLC 310 A 1 HETATM 15 C C5 OLC . . . K 4 5.656 30.702 27.466 1 43.64 ? C5 OLC 310 A 1 HETATM 16 C C4 OLC . . . K 4 4.905 30.333 26.198 1 42.2 ? C4 OLC 310 A 1 HETATM 17 C C3 OLC . . . K 4 4.545 31.513 25.314 1 47.09 ? C3 OLC 310 A 1 HETATM 18 C C2 OLC . . . K 4 3.841 31.086 24.031 1 46.56 ? C2 OLC 310 A 1 HETATM 19 C C21 OLC . . . K 4 3.405 33.276 21.087 1 56.09 ? C21 OLC 310 A 1 HETATM 20 C C1 OLC . . . K 4 3.333 32.241 23.22 1 52.01 ? C1 OLC 310 A 1 HETATM 21 C C22 OLC . . . K 4 3.466 32.717 19.686 1 56.24 ? C22 OLC 310 A 1 HETATM 22 O O19 OLC . . . K 4 2.632 33.121 23.644 1 54.11 ? O19 OLC 310 A 1 HETATM 23 O O25 OLC . . . K 4 5.813 33.236 19.416 1 49.5 ? O25 OLC 310 A 1 HETATM 24 O O23 OLC . . . K 4 2.503 31.667 19.563 1 55.96 ? O23 OLC 310 A 1 HETATM 25 O O20 OLC . . . K 4 3.76 32.175 21.956 1 52.48 ? O20 OLC 310 A 1 HETATM 26 H H18 OLC . . . K 4 5.321 32.813 42.636 1 51.12 ? H18 OLC 310 A 1 HETATM 27 H H18A OLC . . . K 4 5.523 31.095 42.393 1 51.12 ? H18A OLC 310 A 1 HETATM 28 H H18B OLC . . . K 4 6.87 32.179 42.129 1 51.12 ? H18B OLC 310 A 1 HETATM 29 H H10 OLC . . . K 4 8.997 29.139 33.252 1 37.48 ? H10 OLC 310 A 1 HETATM 30 H H9 OLC . . . K 4 8.915 28.194 31.093 1 41.73 ? H9 OLC 310 A 1 HETATM 31 H H17 OLC . . . K 4 4.313 32.172 40.439 1 55.82 ? H17 OLC 310 A 1 HETATM 32 H H17A OLC . . . K 4 5.651 33.231 40.192 1 55.82 ? H17A OLC 310 A 1 HETATM 33 H H11 OLC . . . K 4 6.955 30.927 33.201 1 35.9 ? H11 OLC 310 A 1 HETATM 34 H H11A OLC . . . K 4 5.98 29.501 33.087 1 35.9 ? H11A OLC 310 A 1 HETATM 35 H H8 OLC . . . K 4 5.928 28.612 31.158 1 42.89 ? H8 OLC 310 A 1 HETATM 36 H H8A OLC . . . K 4 6.844 27.681 30.034 1 42.89 ? H8A OLC 310 A 1 HETATM 37 H H24 OLC . . . K 4 4.82 31.791 18.319 1 63.15 ? H24 OLC 310 A 1 HETATM 38 H H24A OLC . . . K 4 5.125 31.378 19.979 1 63.15 ? H24A OLC 310 A 1 HETATM 39 H H16 OLC . . . K 4 7.135 31.266 39.733 1 49.55 ? H16 OLC 310 A 1 HETATM 40 H H16A OLC . . . K 4 5.815 30.201 39.998 1 49.55 ? H16A OLC 310 A 1 HETATM 41 H H12 OLC . . . K 4 6.935 28.594 35.168 1 33.47 ? H12 OLC 310 A 1 HETATM 42 H H12A OLC . . . K 4 8.111 29.848 35.244 1 33.47 ? H12A OLC 310 A 1 HETATM 43 H H7 OLC . . . K 4 6.508 30.699 30.092 1 48.78 ? H7 OLC 310 A 1 HETATM 44 H H7A OLC . . . K 4 7.783 29.988 29.171 1 48.78 ? H7A OLC 310 A 1 HETATM 45 H H15 OLC . . . K 4 5.852 32.326 37.819 1 45.57 ? H15 OLC 310 A 1 HETATM 46 H H15A OLC . . . K 4 4.597 31.17 38.055 1 45.57 ? H15A OLC 310 A 1 HETATM 47 H H13 OLC . . . K 4 5.117 30.214 35.574 1 36.56 ? H13 OLC 310 A 1 HETATM 48 H H13A OLC . . . K 4 6.227 31.53 35.513 1 36.56 ? H13A OLC 310 A 1 HETATM 49 H H6 OLC . . . K 4 6.129 28.654 27.87 1 45.7 ? H6 OLC 310 A 1 HETATM 50 H H6A OLC . . . K 4 4.847 29.262 28.843 1 45.7 ? H6A OLC 310 A 1 HETATM 51 H H14 OLC . . . K 4 6.164 29.308 37.587 1 39.92 ? H14 OLC 310 A 1 HETATM 52 H H14A OLC . . . K 4 7.482 30.402 37.473 1 39.92 ? H14A OLC 310 A 1 HETATM 53 H H5 OLC . . . K 4 5.139 31.521 27.965 1 52.37 ? H5 OLC 310 A 1 HETATM 54 H H5A OLC . . . K 4 6.635 31.106 27.215 1 52.37 ? H5A OLC 310 A 1 HETATM 55 H H4 OLC . . . K 4 5.505 29.628 25.625 1 50.64 ? H4 OLC 310 A 1 HETATM 56 H H4A OLC . . . K 4 4.008 29.776 26.464 1 50.64 ? H4A OLC 310 A 1 HETATM 57 H H3 OLC . . . K 4 3.92 32.223 25.853 1 56.51 ? H3 OLC 310 A 1 HETATM 58 H H3A OLC . . . K 4 5.442 32.076 25.059 1 56.51 ? H3A OLC 310 A 1 HETATM 59 H H2 OLC . . . K 4 4.535 30.522 23.409 1 55.87 ? H2 OLC 310 A 1 HETATM 60 H H2A OLC . . . K 4 3.037 30.389 24.259 1 55.87 ? H2A OLC 310 A 1 HETATM 61 H H21 OLC . . . K 4 4.129 34.075 21.236 1 67.31 ? H21 OLC 310 A 1 HETATM 62 H H21A OLC . . . K 4 2.423 33.69 21.311 1 67.31 ? H21A OLC 310 A 1 HETATM 63 H H22 OLC . . . K 4 3.202 33.514 18.993 1 67.49 ? H22 OLC 310 A 1 HETATM 64 H HO25 OLC . . . K 4 5.901 33.612 18.501 1 59.41 ? HO25 OLC 310 A 1 HETATM 65 H HO23 OLC . . . K 4 1.613 32.107 19.556 1 67.15 ? HO23 OLC 310 A 1 # _model_server_stats.io_time_ms 54 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 331 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 65 #