data_6G7O # _model_server_result.job_id 7iImyvLd8p0VzZimfIPJAw _model_server_result.datetime_utc '2025-03-13 17:09:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6g7o # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":411}' # _entry.id 6G7O # _exptl.entry_id 6G7O _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.54 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2S)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6G7O _cell.length_a 60.88 _cell.length_b 68.83 _cell.length_c 257.52 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6G7O _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id L _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 21 A CYS 21 1_555 A SG CYS 196 A CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? metalc ? metalc1 A OD2 ASP 19 A ASP 19 1_555 K NA NA . A NA 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.113 ? metalc ? metalc2 A OD1 ASP 19 A ASP 19 1_555 M CA CA . A CA 412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.703 ? metalc ? metalc3 A OD2 ASP 19 A ASP 19 1_555 M CA CA . A CA 412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.922 ? metalc ? metalc4 A O TRP 20 A TRP 20 1_555 M CA CA . A CA 412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.176 ? metalc ? metalc5 A O GLU 22 A GLU 22 1_555 M CA CA . A CA 412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.259 ? metalc ? metalc6 A OD1 ASN 24 A ASN 24 1_555 M CA CA . A CA 412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.541 ? metalc ? metalc7 A OE2 GLU 33 A GLU 33 1_555 M CA CA . A CA 412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.708 ? metalc ? metalc8 A OE1 GLU 60 A GLU 60 1_555 O MG MG . A MG 414 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.527 ? metalc ? metalc9 A NE2 HIS 81 A HIS 81 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.416 ? metalc ? metalc10 A NE2 HIS 217 A HIS 217 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.409 ? metalc ? metalc11 A NE2 HIS 221 A HIS 221 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.378 ? metalc ? metalc12 A OD2 ASP 246 A ASP 246 1_555 J NA NA . A NA 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.476 ? metalc ? metalc13 B ZN ZN . A ZN 401 1_555 P O HOH . A HOH 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.207 ? metalc ? metalc14 C O1 SO4 . A SO4 402 1_555 O MG MG . A MG 414 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.807 ? metalc ? metalc15 J NA NA . A NA 409 1_555 P O HOH . A HOH 526 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.776 ? metalc ? metalc16 N MG MG . A MG 413 1_555 P O HOH . A HOH 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.494 ? metalc ? metalc17 N MG MG . A MG 413 1_555 P O HOH . A HOH 509 3_554 ? ? ? ? ? ? ? ? ? ? ? ? 2.494 ? # _chem_comp.formula 'C21 H40 O4' _chem_comp.formula_weight 356.54 _chem_comp.id OLB _chem_comp.mon_nstd_flag . _chem_comp.name '(2S)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O19 OLB doub 237 n n C1 O20 OLB sing 238 n n C2 C1 OLB sing 239 n n C3 C2 OLB sing 240 n n C4 C3 OLB sing 241 n n C5 C4 OLB sing 242 n n C5 C6 OLB sing 243 n n O20 C21 OLB sing 244 n n C21 C22 OLB sing 245 n n C22 C24 OLB sing 246 n n O23 C22 OLB sing 247 n n C24 O25 OLB sing 248 n n C6 C7 OLB sing 249 n n C7 C8 OLB sing 250 n n C8 C9 OLB sing 251 n n C9 C10 OLB doub 252 z n C10 C11 OLB sing 253 n n C2 H2 OLB sing 254 n n C2 H2A OLB sing 255 n n C3 H3 OLB sing 256 n n C3 H3A OLB sing 257 n n C4 H4 OLB sing 258 n n C4 H4A OLB sing 259 n n C5 H5 OLB sing 260 n n C5 H5A OLB sing 261 n n C21 H21 OLB sing 262 n n C21 H21A OLB sing 263 n n C22 H22 OLB sing 264 n n O23 HO23 OLB sing 265 n n C24 H24 OLB sing 266 n n C24 H24A OLB sing 267 n n O25 HO25 OLB sing 268 n n C6 H16 OLB sing 269 n n C6 H17 OLB sing 270 n n C7 H18 OLB sing 271 n n C7 H19 OLB sing 272 n n C8 H20 OLB sing 273 n n C8 H211 OLB sing 274 n n C9 H221 OLB sing 275 n n C10 H23 OLB sing 276 n n C11 H241 OLB sing 277 n n C11 H25 OLB sing 278 n n C11 C12 OLB sing 279 n n C12 H26 OLB sing 280 n n C12 C13 OLB sing 281 n n C12 H27 OLB sing 282 n n C13 C14 OLB sing 283 n n C13 H28 OLB sing 284 n n C13 H29 OLB sing 285 n n C14 H30 OLB sing 286 n n C14 H31 OLB sing 287 n n C14 C15 OLB sing 288 n n C15 C16 OLB sing 289 n n C15 H32 OLB sing 290 n n C15 H33 OLB sing 291 n n C16 H34 OLB sing 292 n n C16 H35 OLB sing 293 n n C16 C17 OLB sing 294 n n C17 C18 OLB sing 295 n n C17 H36 OLB sing 296 n n C17 H37 OLB sing 297 n n C18 H38 OLB sing 298 n n C18 H39 OLB sing 299 n n C18 H40 OLB sing 300 n n # _atom_sites.entry_id 6G7O _atom_sites.fract_transf_matrix[1][1] 0.016426 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014529 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003883 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 401 1 ZN ZN . C 3 SO4 A 1 402 1 SO4 SO4 . D 3 SO4 A 1 403 2 SO4 SO4 . E 3 SO4 A 1 404 5 SO4 SO4 . F 3 SO4 A 1 405 6 SO4 SO4 . G 3 SO4 A 1 406 8 SO4 SO4 . H 3 SO4 A 1 407 9 SO4 SO4 . I 4 NA A 1 408 1 NA NA . J 4 NA A 1 409 3 NA NA . K 4 NA A 1 410 4 NA NA . L 5 OLB A 1 411 1 OLB OLB . M 6 CA A 1 412 1 CA CA . N 7 MG A 1 413 1 MG MG . O 7 MG A 1 414 2 MG MG . P 8 HOH A 1 501 51 HOH HOH . P 8 HOH A 2 502 5 HOH HOH . P 8 HOH A 3 503 4 HOH HOH . P 8 HOH A 4 504 8 HOH HOH . P 8 HOH A 5 505 49 HOH HOH . P 8 HOH A 6 506 76 HOH HOH . P 8 HOH A 7 507 44 HOH HOH . P 8 HOH A 8 508 7 HOH HOH . P 8 HOH A 9 509 34 HOH HOH . P 8 HOH A 10 510 3 HOH HOH . P 8 HOH A 11 511 23 HOH HOH . P 8 HOH A 12 512 68 HOH HOH . P 8 HOH A 13 513 7 HOH HOH . P 8 HOH A 14 514 25 HOH HOH . P 8 HOH A 15 515 35 HOH HOH . P 8 HOH A 16 516 52 HOH HOH . P 8 HOH A 17 517 1 HOH HOH . P 8 HOH A 18 518 13 HOH HOH . P 8 HOH A 19 519 64 HOH HOH . P 8 HOH A 20 520 63 HOH HOH . P 8 HOH A 21 521 2 HOH HOH . P 8 HOH A 22 522 18 HOH HOH . P 8 HOH A 23 523 57 HOH HOH . P 8 HOH A 24 524 50 HOH HOH . P 8 HOH A 25 525 34 HOH HOH . P 8 HOH A 26 526 15 HOH HOH . P 8 HOH A 27 527 17 HOH HOH . P 8 HOH A 28 528 10 HOH HOH . P 8 HOH A 29 529 21 HOH HOH . P 8 HOH A 30 530 4 HOH HOH . P 8 HOH A 31 531 16 HOH HOH . P 8 HOH A 32 532 55 HOH HOH . P 8 HOH A 33 533 8 HOH HOH . P 8 HOH A 34 534 13 HOH HOH . P 8 HOH A 35 535 19 HOH HOH . P 8 HOH A 36 536 12 HOH HOH . P 8 HOH A 37 537 23 HOH HOH . P 8 HOH A 38 538 33 HOH HOH . P 8 HOH A 39 539 74 HOH HOH . P 8 HOH A 40 540 12 HOH HOH . P 8 HOH A 41 541 31 HOH HOH . P 8 HOH A 42 542 46 HOH HOH . P 8 HOH A 43 543 50 HOH HOH . P 8 HOH A 44 544 3 HOH HOH . P 8 HOH A 45 545 54 HOH HOH . P 8 HOH A 46 546 24 HOH HOH . P 8 HOH A 47 547 5 HOH HOH . P 8 HOH A 48 548 29 HOH HOH . P 8 HOH A 49 549 75 HOH HOH . P 8 HOH A 50 550 53 HOH HOH . P 8 HOH A 51 551 61 HOH HOH . P 8 HOH A 52 552 22 HOH HOH . P 8 HOH A 53 553 40 HOH HOH . P 8 HOH A 54 554 17 HOH HOH . P 8 HOH A 55 555 69 HOH HOH . P 8 HOH A 56 556 15 HOH HOH . P 8 HOH A 57 557 48 HOH HOH . P 8 HOH A 58 558 51 HOH HOH . P 8 HOH A 59 559 9 HOH HOH . P 8 HOH A 60 560 47 HOH HOH . P 8 HOH A 61 561 9 HOH HOH . P 8 HOH A 62 562 66 HOH HOH . P 8 HOH A 63 563 41 HOH HOH . P 8 HOH A 64 564 28 HOH HOH . P 8 HOH A 65 565 2 HOH HOH . P 8 HOH A 66 566 10 HOH HOH . P 8 HOH A 67 567 27 HOH HOH . P 8 HOH A 68 568 37 HOH HOH . P 8 HOH A 69 569 71 HOH HOH . P 8 HOH A 70 570 14 HOH HOH . P 8 HOH A 71 571 49 HOH HOH . P 8 HOH A 72 572 30 HOH HOH . P 8 HOH A 73 573 73 HOH HOH . P 8 HOH A 74 574 33 HOH HOH . P 8 HOH A 75 575 1 HOH HOH . P 8 HOH A 76 576 27 HOH HOH . P 8 HOH A 77 577 28 HOH HOH . P 8 HOH A 78 578 32 HOH HOH . P 8 HOH A 79 579 39 HOH HOH . P 8 HOH A 80 580 60 HOH HOH . P 8 HOH A 81 581 47 HOH HOH . P 8 HOH A 82 582 11 HOH HOH . P 8 HOH A 83 583 35 HOH HOH . P 8 HOH A 84 584 59 HOH HOH . P 8 HOH A 85 585 39 HOH HOH . P 8 HOH A 86 586 26 HOH HOH . P 8 HOH A 87 587 45 HOH HOH . P 8 HOH A 88 588 52 HOH HOH . P 8 HOH A 89 589 38 HOH HOH . P 8 HOH A 90 590 6 HOH HOH . P 8 HOH A 91 591 32 HOH HOH . P 8 HOH A 92 592 25 HOH HOH . P 8 HOH A 93 593 36 HOH HOH . P 8 HOH A 94 594 14 HOH HOH . P 8 HOH A 95 595 20 HOH HOH . P 8 HOH A 96 596 26 HOH HOH . P 8 HOH A 97 597 78 HOH HOH . P 8 HOH A 98 598 24 HOH HOH . P 8 HOH A 99 599 58 HOH HOH . P 8 HOH A 100 600 62 HOH HOH . P 8 HOH A 101 601 42 HOH HOH . P 8 HOH A 102 602 77 HOH HOH . P 8 HOH A 103 603 65 HOH HOH . P 8 HOH A 104 604 70 HOH HOH . P 8 HOH A 105 605 31 HOH HOH . P 8 HOH A 106 606 29 HOH HOH . P 8 HOH A 107 607 67 HOH HOH . P 8 HOH A 108 608 46 HOH HOH . P 8 HOH A 109 609 80 HOH HOH . P 8 HOH A 110 610 79 HOH HOH . P 8 HOH A 111 611 81 HOH HOH . P 8 HOH A 112 612 41 HOH HOH . P 8 HOH A 113 613 72 HOH HOH . P 8 HOH A 114 614 48 HOH HOH . P 8 HOH A 115 615 44 HOH HOH . P 8 HOH A 116 616 36 HOH HOH . P 8 HOH A 117 617 42 HOH HOH . P 8 HOH A 118 618 43 HOH HOH . P 8 HOH A 119 619 43 HOH HOH . P 8 HOH A 120 620 45 HOH HOH . P 8 HOH A 121 621 56 HOH HOH . P 8 HOH A 122 622 18 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 OLB . . . L 5 -6.906 11.402 -19.591 1 90.5 ? C1 OLB 411 A 1 HETATM 2 C C2 OLB . . . L 5 -7.884 10.321 -19.233 1 90.05 ? C2 OLB 411 A 1 HETATM 3 C C3 OLB . . . L 5 -7.717 9.058 -20.067 1 89.58 ? C3 OLB 411 A 1 HETATM 4 C C4 OLB . . . L 5 -8.776 8.921 -21.147 1 89.01 ? C4 OLB 411 A 1 HETATM 5 C C5 OLB . . . L 5 -8.568 7.757 -22.109 1 88.42 ? C5 OLB 411 A 1 HETATM 6 O O19 OLB . . . L 5 -5.832 11.549 -19.069 1 90.68 ? O19 OLB 411 A 1 HETATM 7 O O20 OLB . . . L 5 -7.385 12.192 -20.561 1 90.65 ? O20 OLB 411 A 1 HETATM 8 C C21 OLB . . . L 5 -6.608 13.351 -20.949 1 90.76 ? C21 OLB 411 A 1 HETATM 9 C C22 OLB . . . L 5 -7.572 14.283 -21.644 1 91.14 ? C22 OLB 411 A 1 HETATM 10 O O23 OLB . . . L 5 -8.759 14.449 -20.863 1 91.33 ? O23 OLB 411 A 1 HETATM 11 C C24 OLB . . . L 5 -6.968 15.636 -21.943 1 91.19 ? C24 OLB 411 A 1 HETATM 12 O O25 OLB . . . L 5 -7.864 16.431 -22.708 1 91.05 ? O25 OLB 411 A 1 HETATM 13 C C6 OLB . . . L 5 -9.711 7.505 -23.094 1 87.85 ? C6 OLB 411 A 1 HETATM 14 C C7 OLB . . . L 5 -9.885 8.518 -24.228 1 87.16 ? C7 OLB 411 A 1 HETATM 15 C C8 OLB . . . L 5 -8.893 8.369 -25.384 1 86.26 ? C8 OLB 411 A 1 HETATM 16 C C9 OLB . . . L 5 -9.285 9.174 -26.59 1 85.4 ? C9 OLB 411 A 1 HETATM 17 C C10 OLB . . . L 5 -8.675 9.228 -27.768 1 84.59 ? C10 OLB 411 A 1 HETATM 18 C C11 OLB . . . L 5 -7.423 8.509 -28.198 1 83.91 ? C11 OLB 411 A 1 HETATM 19 C C12 OLB . . . L 5 -6.279 9.436 -28.632 1 83.58 ? C12 OLB 411 A 1 HETATM 20 C C13 OLB . . . L 5 -6.389 9.986 -30.052 1 83.24 ? C13 OLB 411 A 1 HETATM 21 C C14 OLB . . . L 5 -7.075 11.339 -30.192 1 82.94 ? C14 OLB 411 A 1 HETATM 22 C C15 OLB . . . L 5 -7.472 11.692 -31.617 1 82.75 ? C15 OLB 411 A 1 HETATM 23 C C16 OLB . . . L 5 -8.22 13.008 -31.753 1 82.75 ? C16 OLB 411 A 1 HETATM 24 C C17 OLB . . . L 5 -8.945 13.17 -33.079 1 82.7 ? C17 OLB 411 A 1 HETATM 25 C C18 OLB . . . L 5 -9.762 14.44 -33.16 1 82.57 ? C18 OLB 411 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 321 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 25 #