data_6G8G # _model_server_result.job_id sa6w45rIGC5Y-PHrH1ezyw _model_server_result.datetime_utc '2024-11-26 00:22:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6g8g # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":1001}' # _entry.id 6G8G # _exptl.entry_id 6G8G _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 270.237 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GENISTEIN _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6G8G _cell.length_a 119.044 _cell.length_b 119.044 _cell.length_c 78.305 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6G8G _symmetry.cell_setting ? _symmetry.Int_Tables_number 78 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 ? dimeric 2 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,H,I,J 1 1 C,D,K,L,M 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 G N N ? 3 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C LYS 22 A LYS 22 1_555 A N MSE 23 A MSE 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.319 ? covale ? covale2 A C MSE 23 A MSE 23 1_555 A N ASP 24 A ASP 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale3 A C SER 43 A SER 43 1_555 A N MSE 44 A MSE 44 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale4 A C MSE 44 A MSE 44 1_555 A N ASP 45 A ASP 45 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.316 ? covale ? covale5 A C PRO 164 A PRO 164 1_555 A N MSE 165 A MSE 165 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? covale ? covale6 A C MSE 165 A MSE 165 1_555 A N GLU 166 A GLU 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale7 B C LYS 22 B LYS 22 1_555 B N MSE 23 B MSE 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale8 B C MSE 23 B MSE 23 1_555 B N ASP 24 B ASP 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale9 B C SER 43 B SER 43 1_555 B N MSE 44 B MSE 44 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale10 B C MSE 44 B MSE 44 1_555 B N ASP 45 B ASP 45 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale11 B C PRO 164 B PRO 164 1_555 B N MSE 165 B MSE 165 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale12 B C MSE 165 B MSE 165 1_555 B N GLU 166 B GLU 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? covale ? covale13 C C LYS 22 C LYS 22 1_555 C N MSE 23 C MSE 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale14 C C MSE 23 C MSE 23 1_555 C N ASP 24 C ASP 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale15 C C SER 43 C SER 43 1_555 C N MSE 44 C MSE 44 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.319 ? covale ? covale16 C C MSE 44 C MSE 44 1_555 C N ASP 45 C ASP 45 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? covale ? covale17 C C PRO 164 C PRO 164 1_555 C N MSE 165 C MSE 165 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.317 ? covale ? covale18 C C MSE 165 C MSE 165 1_555 C N GLU 166 C GLU 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale19 D C LYS 22 D LYS 22 1_555 D N MSE 23 D MSE 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale20 D C MSE 23 D MSE 23 1_555 D N ASP 24 D ASP 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.316 ? covale ? covale21 D C SER 43 D SER 43 1_555 D N MSE 44 D MSE 44 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale22 D C MSE 44 D MSE 44 1_555 D N ASP 45 D ASP 45 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale23 D C PRO 164 D PRO 164 1_555 D N MSE 165 D MSE 165 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale24 D C MSE 165 D MSE 165 1_555 D N GLU 166 D GLU 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? # _chem_comp.formula 'C15 H10 O5' _chem_comp.formula_weight 270.237 _chem_comp.id GEN _chem_comp.mon_nstd_flag . _chem_comp.name GENISTEIN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "5,7-DIHYDROXY-3-(4-HYDROXYPHENYL)-4H-1-BENZOPYRAN-4-ONE;4',5,7-TRIHYDROXYISOFLAVONE;PRUNETOL;GENISTEOL" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 GEN doub 83 n y C1 C10 GEN sing 84 n y C1 H1 GEN sing 85 n n C2 O2 GEN sing 86 n n C2 C3 GEN sing 87 n y O2 H2 GEN sing 88 n n C3 C4 GEN doub 89 n y C3 H3 GEN sing 90 n n C4 O4 GEN sing 91 n n C4 C5 GEN sing 92 n y O4 H4 GEN sing 93 n n C5 C6 GEN sing 94 n y C5 C10 GEN doub 95 n y C6 O6 GEN doub 96 n n C6 C7 GEN sing 97 n y C7 C8 GEN doub 98 n y C7 C11 GEN sing 99 n y C8 O9 GEN sing 100 n y C8 H8 GEN sing 101 n n O9 C10 GEN sing 102 n y C11 C12 GEN doub 103 n y C11 C16 GEN sing 104 n y C12 C13 GEN sing 105 n y C12 H12 GEN sing 106 n n C13 C14 GEN doub 107 n y C13 H13 GEN sing 108 n n C14 O14 GEN sing 109 n n C14 C15 GEN sing 110 n y O14 H14 GEN sing 111 n n C15 C16 GEN doub 112 n y C15 H15 GEN sing 113 n n C16 H16 GEN sing 114 n n # _atom_sites.entry_id 6G8G _atom_sites.fract_transf_matrix[1][1] 0.0084 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.0084 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012771 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 NHE A 1 1003 1003 NHE NHE . F 2 NHE A 1 1004 1004 NHE NHE . G 3 GEN B 1 1001 1001 GEN GEN . H 2 NHE B 1 1002 1002 NHE NHE . I 2 NHE B 1 1007 1007 NHE NHE . J 2 NHE B 1 1008 1008 NHE NHE . K 2 NHE C 1 1006 1006 NHE NHE . L 3 GEN D 1 1002 1002 GEN GEN . M 2 NHE D 1 1005 1005 NHE NHE . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GEN . . . G 3 23.526 21.874 2.901 1 99.85 ? C1 GEN 1001 B 1 HETATM 2 C C2 GEN . . . G 3 24.639 22.758 3.115 1 97.89 ? C2 GEN 1001 B 1 HETATM 3 O O2 GEN . . . G 3 25.939 22.354 2.907 1 102.31 ? O2 GEN 1001 B 1 HETATM 4 C C3 GEN . . . G 3 24.503 24.082 3.538 1 84.45 ? C3 GEN 1001 B 1 HETATM 5 C C4 GEN . . . G 3 23.251 24.587 3.777 1 81.75 ? C4 GEN 1001 B 1 HETATM 6 O O4 GEN . . . G 3 23.193 25.879 4.193 1 79.17 ? O4 GEN 1001 B 1 HETATM 7 C C5 GEN . . . G 3 22.057 23.689 3.582 1 87.99 ? C5 GEN 1001 B 1 HETATM 8 C C6 GEN . . . G 3 20.693 24.165 3.826 1 97.27 ? C6 GEN 1001 B 1 HETATM 9 O O6 GEN . . . G 3 20.575 25.366 4.193 1 94.73 ? O6 GEN 1001 B 1 HETATM 10 C C7 GEN . . . G 3 19.547 23.176 3.667 1 106.69 ? C7 GEN 1001 B 1 HETATM 11 C C8 GEN . . . G 3 19.791 21.851 3.189 1 92.56 ? C8 GEN 1001 B 1 HETATM 12 O O9 GEN . . . G 3 21.051 21.425 2.95 1 83.91 ? O9 GEN 1001 B 1 HETATM 13 C C10 GEN . . . G 3 22.185 22.268 3.119 1 95.22 ? C10 GEN 1001 B 1 HETATM 14 C C11 GEN . . . G 3 18.15 23.723 3.71 1 118.24 ? C11 GEN 1001 B 1 HETATM 15 C C12 GEN . . . G 3 16.948 22.995 3.819 1 113.88 ? C12 GEN 1001 B 1 HETATM 16 C C13 GEN . . . G 3 15.733 23.717 3.654 1 108.71 ? C13 GEN 1001 B 1 HETATM 17 C C14 GEN . . . G 3 15.705 25.099 3.292 1 98.2 ? C14 GEN 1001 B 1 HETATM 18 O O14 GEN . . . G 3 14.528 25.782 3.129 1 94.43 ? O14 GEN 1001 B 1 HETATM 19 C C15 GEN . . . G 3 16.888 25.801 3.089 1 91.31 ? C15 GEN 1001 B 1 HETATM 20 C C16 GEN . . . G 3 18.068 25.102 3.263 1 100.94 ? C16 GEN 1001 B 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 20 #