data_6G8N # _model_server_result.job_id 9yCQhu_psj0AucIz4mxPvQ _model_server_result.datetime_utc '2024-11-04 23:49:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6g8n # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"GA","auth_seq_id":301}' # _entry.id 6G8N # _exptl.entry_id 6G8N _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 478.578 _entity.id 17 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2~{S},3~{S})-3-methyl-2-[(1~{R})-2-[[(2~{S})-3-methyl-1-[[(2~{S})-3-methyl-1-oxidanylidene-1-phenylmethoxy-butan-2-yl] amino]-1-oxidanylidene-butan-2-yl]amino]-1-oxidanyl-2-oxidanylidene-ethyl]pentanoic acid' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 112.82 _cell.angle_gamma 90 _cell.entry_id 6G8N _cell.length_a 136.22 _cell.length_b 302.72 _cell.length_c 143.97 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6G8N _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 28-meric _pdbx_struct_assembly.oligomeric_count 28 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 17 EA N N ? 17 GA N N ? 17 IA N N ? 17 LA N N ? 17 OA N N ? 17 RA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 H OG1 THR 1 H THR 1 1_555 EA C1 EQB . H EQB 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale2 K OG1 THR 1 K THR 1 1_555 GA C1 EQB . K EQB 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? covale ? covale3 N OG1 THR 1 N THR 1 1_555 IA C1 EQB . N EQB 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.347 ? covale ? covale4 V OG1 THR 1 V THR 1 1_555 LA C1 EQB . V EQB 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.356 ? covale ? covale5 Y OG1 THR 1 Y THR 1 1_555 OA C1 EQB . Y EQB 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale6 BA OG1 THR 1 b THR 1 1_555 RA C1 EQB . b EQB 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.345 ? metalc ? metalc1 G OG1 THR 17 G THR 8 1_555 CA MG MG . G MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.683 ? metalc ? metalc2 G O TYR 128 G TYR 119 1_555 CA MG MG . G MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.783 ? metalc ? metalc3 G O ARG 131 G ARG 122 1_555 CA MG MG . G MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.781 ? metalc ? metalc4 G O MET 134 G MET 125 1_555 CA MG MG . G MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.135 ? metalc ? metalc5 I O ASP 205 I ASP 204 1_555 PA MG MG . Y MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.542 ? metalc ? metalc6 K O ALA 165 K ALA 165 1_555 HA MG MG . K MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.569 ? metalc ? metalc7 K O HIS 166 K HIS 166 1_555 HA MG MG . K MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.921 ? metalc ? metalc8 K O ASP 168 K ASP 168 1_555 HA MG MG . K MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.607 ? metalc ? metalc9 HA MG MG . K MG 302 1_555 W O ASP 205 W ASP 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.666 ? metalc ? metalc10 L OXT ASP 222 L ASP 222 1_555 MA MG MG . V MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? metalc ? metalc11 N O ILE 163 N ILE 163 1_555 JA MG MG . N MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.891 ? metalc ? metalc12 N O ASP 166 N ASP 166 1_555 JA MG MG . N MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.907 ? metalc ? metalc13 N O SER 169 N SER 169 1_555 JA MG MG . N MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.565 ? metalc ? metalc14 V O ILE 163 V ILE 163 1_555 MA MG MG . V MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.325 ? metalc ? metalc15 V O ASP 166 V ASP 166 1_555 MA MG MG . V MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? metalc ? metalc16 W O ALA 175 W ALA 174 1_555 NA MG MG . W MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.933 ? metalc ? metalc17 W O ASP 178 W ASP 177 1_555 NA MG MG . W MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.861 ? metalc ? metalc18 Y O ALA 165 Y ALA 165 1_555 PA MG MG . Y MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.936 ? metalc ? metalc19 Y O ASP 168 Y ASP 168 1_555 PA MG MG . Y MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.652 ? metalc ? metalc20 Z O THR 192 Z THR 192 1_555 QA MG MG . Z MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.848 ? metalc ? metalc21 Z O HIS 195 Z HIS 195 1_555 QA MG MG . Z MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.788 ? metalc ? metalc22 Z O VAL 198 Z VAL 198 1_555 QA MG MG . Z MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.579 ? # _chem_comp.formula 'C25 H38 N2 O7' _chem_comp.formula_weight 478.578 _chem_comp.id EQB _chem_comp.mon_nstd_flag . _chem_comp.name '(2~{S},3~{S})-3-methyl-2-[(1~{R})-2-[[(2~{S})-3-methyl-1-[[(2~{S})-3-methyl-1-oxidanylidene-1-phenylmethoxy-butan-2-yl] amino]-1-oxidanylidene-butan-2-yl]amino]-1-oxidanyl-2-oxidanylidene-ethyl]pentanoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'Cystargolide B Derivative' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O12 C11 EQB doub 83 n n C6 C5 EQB sing 84 n n C17 C15 EQB sing 85 n n C9 C11 EQB sing 86 n n C9 O10 EQB sing 87 n n C9 C4 EQB sing 88 n n C11 N13 EQB sing 89 n n C5 C4 EQB sing 90 n n C5 C7 EQB sing 91 n n C4 C1 EQB sing 92 n n C15 C14 EQB sing 93 n n C15 C16 EQB sing 94 n n N13 C14 EQB sing 95 n n C14 C18 EQB sing 96 n n C7 C8 EQB sing 97 n n C1 O3 EQB doub 98 n n C18 N20 EQB sing 99 n n C18 O19 EQB doub 100 n n N20 C21 EQB sing 101 n n C24 C22 EQB sing 102 n n O26 C25 EQB doub 103 n n C21 C22 EQB sing 104 n n C21 C25 EQB sing 105 n n C22 C23 EQB sing 106 n n C25 O27 EQB sing 107 n n O27 C28 EQB sing 108 n n C28 C29 EQB sing 109 n n C29 C30 EQB doub 110 n y C29 C34 EQB sing 111 n y C30 C31 EQB sing 112 n y C34 C33 EQB doub 113 n y C31 C32 EQB doub 114 n y C33 C32 EQB sing 115 n y C4 H1 EQB sing 116 n n C5 H2 EQB sing 117 n n C6 H3 EQB sing 118 n n C6 H4 EQB sing 119 n n C6 H5 EQB sing 120 n n C7 H6 EQB sing 121 n n C7 H7 EQB sing 122 n n C8 H8 EQB sing 123 n n C8 H9 EQB sing 124 n n C8 H10 EQB sing 125 n n C15 H11 EQB sing 126 n n C17 H12 EQB sing 127 n n C17 H13 EQB sing 128 n n C17 H14 EQB sing 129 n n C21 H15 EQB sing 130 n n C22 H16 EQB sing 131 n n C24 H17 EQB sing 132 n n C24 H18 EQB sing 133 n n C24 H19 EQB sing 134 n n C28 H20 EQB sing 135 n n C28 H21 EQB sing 136 n n C9 H23 EQB sing 137 n n O10 H24 EQB sing 138 n n N13 H25 EQB sing 139 n n C14 H26 EQB sing 140 n n C16 H27 EQB sing 141 n n C16 H28 EQB sing 142 n n C16 H29 EQB sing 143 n n N20 H30 EQB sing 144 n n C23 H31 EQB sing 145 n n C23 H32 EQB sing 146 n n C23 H33 EQB sing 147 n n C30 H34 EQB sing 148 n n C31 H35 EQB sing 149 n n C32 H36 EQB sing 150 n n C33 H37 EQB sing 151 n n C34 H38 EQB sing 152 n n C1 OXT EQB sing 153 n n OXT HXT EQB sing 154 n n # _atom_sites.entry_id 6G8N _atom_sites.fract_transf_matrix[1][1] 0.007341 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003088 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.003303 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007535 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code CA 15 MG G 1 301 6 MG MG . DA 16 CL G 1 302 9 CL CL . EA 17 EQB H 1 301 1 EQB LIG . FA 15 MG I 1 301 7 MG MG . GA 17 EQB K 1 301 1 EQB LIG . HA 15 MG K 1 302 1 MG MG . IA 17 EQB N 1 201 1 EQB LIG . JA 15 MG N 1 202 5 MG MG . KA 16 CL U 1 301 10 CL CL . LA 17 EQB V 1 301 1 EQB LIG . MA 15 MG V 1 302 2 MG MG . NA 15 MG W 1 301 8 MG MG . OA 17 EQB Y 1 301 1 EQB LIG . PA 15 MG Y 1 302 4 MG MG . QA 15 MG Z 1 301 3 MG MG . RA 17 EQB b 1 201 1 EQB LIG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 EQB . . . GA 17 11.983 -139.343 13.077 1 75.5 ? C4 EQB 301 K 1 HETATM 2 C C5 EQB . . . GA 17 10.759 -138.515 13.343 1 73.6 ? C5 EQB 301 K 1 HETATM 3 C C6 EQB . . . GA 17 10.523 -138.469 14.84 1 78.24 ? C6 EQB 301 K 1 HETATM 4 C C7 EQB . . . GA 17 11.008 -137.099 12.904 1 71.18 ? C7 EQB 301 K 1 HETATM 5 C C8 EQB . . . GA 17 12.15 -136.544 13.691 1 71.34 ? C8 EQB 301 K 1 HETATM 6 C C15 EQB . . . GA 17 14.058 -142.381 16.966 1 83.03 ? C15 EQB 301 K 1 HETATM 7 C C17 EQB . . . GA 17 14.312 -143.488 15.979 1 81.88 ? C17 EQB 301 K 1 HETATM 8 C C21 EQB . . . GA 17 11.66 -140.164 19.862 1 92.28 ? C21 EQB 301 K 1 HETATM 9 C C22 EQB . . . GA 17 10.185 -139.813 19.787 1 84.66 ? C22 EQB 301 K 1 HETATM 10 C C24 EQB . . . GA 17 9.902 -139.22 18.426 1 79.01 ? C24 EQB 301 K 1 HETATM 11 C C28 EQB . . . GA 17 12.305 -139.973 23.532 1 106.41 ? C28 EQB 301 K 1 HETATM 12 C C1 EQB . . . GA 17 12.254 -139.137 11.617 1 68.43 ? C1 EQB 301 K 1 HETATM 13 O O3 EQB . . . GA 17 12.895 -138.172 11.294 1 65.37 ? O3 EQB 301 K 1 HETATM 14 C C9 EQB . . . GA 17 11.598 -140.799 13.259 1 81.77 ? C9 EQB 301 K 1 HETATM 15 O O10 EQB . . . GA 17 12.513 -141.593 12.538 1 85.67 ? O10 EQB 301 K 1 HETATM 16 C C11 EQB . . . GA 17 11.484 -141.28 14.703 1 85.49 ? C11 EQB 301 K 1 HETATM 17 O O12 EQB . . . GA 17 10.415 -141.58 15.203 1 93.16 ? O12 EQB 301 K 1 HETATM 18 N N13 EQB . . . GA 17 12.633 -141.452 15.327 1 86.67 ? N13 EQB 301 K 1 HETATM 19 C C14 EQB . . . GA 17 12.669 -141.906 16.7 1 83.34 ? C14 EQB 301 K 1 HETATM 20 C C16 EQB . . . GA 17 14.109 -142.979 18.347 1 78.9 ? C16 EQB 301 K 1 HETATM 21 C C18 EQB . . . GA 17 12.35 -140.782 17.619 1 89.93 ? C18 EQB 301 K 1 HETATM 22 O O19 EQB . . . GA 17 12.38 -139.632 17.222 1 100.32 ? O19 EQB 301 K 1 HETATM 23 N N20 EQB . . . GA 17 12.003 -141.148 18.845 1 93.8 ? N20 EQB 301 K 1 HETATM 24 C C23 EQB . . . GA 17 9.363 -141.068 19.932 1 80.94 ? C23 EQB 301 K 1 HETATM 25 C C25 EQB . . . GA 17 12.03 -140.655 21.256 1 102.03 ? C25 EQB 301 K 1 HETATM 26 O O26 EQB . . . GA 17 12.395 -141.801 21.478 1 104.16 ? O26 EQB 301 K 1 HETATM 27 O O27 EQB . . . GA 17 11.973 -139.671 22.178 1 117.48 ? O27 EQB 301 K 1 HETATM 28 C C29 EQB . . . GA 17 12.782 -138.804 24.144 1 101.52 ? C29 EQB 301 K 1 HETATM 29 C C30 EQB . . . GA 17 12.454 -137.547 23.657 1 98.13 ? C30 EQB 301 K 1 HETATM 30 C C31 EQB . . . GA 17 12.948 -136.415 24.277 1 88.09 ? C31 EQB 301 K 1 HETATM 31 C C32 EQB . . . GA 17 13.77 -136.508 25.382 1 87.29 ? C32 EQB 301 K 1 HETATM 32 C C33 EQB . . . GA 17 14.1 -137.755 25.868 1 90.2 ? C33 EQB 301 K 1 HETATM 33 C C34 EQB . . . GA 17 13.609 -138.895 25.252 1 96.03 ? C34 EQB 301 K 1 # _model_server_stats.io_time_ms 94 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 88 _model_server_stats.query_time_ms 268 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 33 #