data_6G8W # _model_server_result.job_id tiRpszMBFZ_1KnMliLlljg _model_server_result.datetime_utc '2024-11-21 22:56:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6g8w # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":302}' # _entry.id 6G8W # _exptl.entry_id 6G8W _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 110.82 _cell.angle_gamma 90 _cell.entry_id 6G8W _cell.length_a 50.825 _cell.length_b 82.613 _cell.length_c 49.22 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6G8W _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id G _struct_conn.ptnr1_label_atom_id C2 _struct_conn.ptnr1_label_comp_id EDO _struct_conn.ptnr1_label_seq_id . _struct_conn.ptnr1_auth_asym_id B _struct_conn.ptnr1_auth_comp_id EDO _struct_conn.ptnr1_auth_seq_id 305 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id H _struct_conn.ptnr2_label_atom_id C1 _struct_conn.ptnr2_label_comp_id EDO _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id B _struct_conn.ptnr2_auth_comp_id EDO _struct_conn.ptnr2_auth_seq_id 306 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.554 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 6G8W _atom_sites.fract_transf_matrix[1][1] 0.019675 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00748 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012105 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021736 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 EDO B 1 301 1 EDO EDO . D 2 EDO B 1 302 2 EDO EDO . E 2 EDO B 1 303 3 EDO EDO . F 2 EDO B 1 304 4 EDO EDO . G 2 EDO B 1 305 5 EDO EDO . H 2 EDO B 1 306 6 EDO EDO . I 3 HOH A 1 301 61 HOH HOH . I 3 HOH A 2 302 71 HOH HOH . I 3 HOH A 3 303 9 HOH HOH . I 3 HOH A 4 304 31 HOH HOH . I 3 HOH A 5 305 1 HOH HOH . I 3 HOH A 6 306 23 HOH HOH . I 3 HOH A 7 307 46 HOH HOH . I 3 HOH A 8 308 25 HOH HOH . I 3 HOH A 9 309 16 HOH HOH . I 3 HOH A 10 310 10 HOH HOH . I 3 HOH A 11 311 45 HOH HOH . I 3 HOH A 12 312 80 HOH HOH . I 3 HOH A 13 313 70 HOH HOH . I 3 HOH A 14 314 63 HOH HOH . I 3 HOH A 15 315 7 HOH HOH . I 3 HOH A 16 316 6 HOH HOH . I 3 HOH A 17 317 41 HOH HOH . I 3 HOH A 18 318 78 HOH HOH . I 3 HOH A 19 319 56 HOH HOH . I 3 HOH A 20 320 20 HOH HOH . I 3 HOH A 21 321 38 HOH HOH . I 3 HOH A 22 322 59 HOH HOH . I 3 HOH A 23 323 18 HOH HOH . I 3 HOH A 24 324 11 HOH HOH . I 3 HOH A 25 325 65 HOH HOH . I 3 HOH A 26 326 75 HOH HOH . I 3 HOH A 27 327 5 HOH HOH . I 3 HOH A 28 328 42 HOH HOH . I 3 HOH A 29 329 19 HOH HOH . I 3 HOH A 30 330 79 HOH HOH . I 3 HOH A 31 331 24 HOH HOH . I 3 HOH A 32 332 91 HOH HOH . I 3 HOH A 33 333 30 HOH HOH . I 3 HOH A 34 334 88 HOH HOH . I 3 HOH A 35 335 22 HOH HOH . I 3 HOH A 36 336 76 HOH HOH . I 3 HOH A 37 337 54 HOH HOH . I 3 HOH A 38 338 62 HOH HOH . I 3 HOH A 39 339 93 HOH HOH . I 3 HOH A 40 340 72 HOH HOH . I 3 HOH A 41 341 69 HOH HOH . I 3 HOH A 42 342 55 HOH HOH . J 3 HOH B 1 401 73 HOH HOH . J 3 HOH B 2 402 40 HOH HOH . J 3 HOH B 3 403 32 HOH HOH . J 3 HOH B 4 404 12 HOH HOH . J 3 HOH B 5 405 39 HOH HOH . J 3 HOH B 6 406 83 HOH HOH . J 3 HOH B 7 407 50 HOH HOH . J 3 HOH B 8 408 77 HOH HOH . J 3 HOH B 9 409 96 HOH HOH . J 3 HOH B 10 410 86 HOH HOH . J 3 HOH B 11 411 82 HOH HOH . J 3 HOH B 12 412 81 HOH HOH . J 3 HOH B 13 413 29 HOH HOH . J 3 HOH B 14 414 48 HOH HOH . J 3 HOH B 15 415 17 HOH HOH . J 3 HOH B 16 416 68 HOH HOH . J 3 HOH B 17 417 33 HOH HOH . J 3 HOH B 18 418 14 HOH HOH . J 3 HOH B 19 419 60 HOH HOH . J 3 HOH B 20 420 84 HOH HOH . J 3 HOH B 21 421 3 HOH HOH . J 3 HOH B 22 422 4 HOH HOH . J 3 HOH B 23 423 26 HOH HOH . J 3 HOH B 24 424 28 HOH HOH . J 3 HOH B 25 425 64 HOH HOH . J 3 HOH B 26 426 58 HOH HOH . J 3 HOH B 27 427 74 HOH HOH . J 3 HOH B 28 428 53 HOH HOH . J 3 HOH B 29 429 21 HOH HOH . J 3 HOH B 30 430 8 HOH HOH . J 3 HOH B 31 431 37 HOH HOH . J 3 HOH B 32 432 57 HOH HOH . J 3 HOH B 33 433 43 HOH HOH . J 3 HOH B 34 434 89 HOH HOH . J 3 HOH B 35 435 49 HOH HOH . J 3 HOH B 36 436 52 HOH HOH . J 3 HOH B 37 437 15 HOH HOH . J 3 HOH B 38 438 44 HOH HOH . J 3 HOH B 39 439 95 HOH HOH . J 3 HOH B 40 440 2 HOH HOH . J 3 HOH B 41 441 67 HOH HOH . J 3 HOH B 42 442 34 HOH HOH . J 3 HOH B 43 443 13 HOH HOH . J 3 HOH B 44 444 94 HOH HOH . J 3 HOH B 45 445 90 HOH HOH . J 3 HOH B 46 446 92 HOH HOH . J 3 HOH B 47 447 27 HOH HOH . J 3 HOH B 48 448 85 HOH HOH . J 3 HOH B 49 449 51 HOH HOH . J 3 HOH B 50 450 47 HOH HOH . J 3 HOH B 51 451 66 HOH HOH . J 3 HOH B 52 452 87 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . D 2 -29.782 -13.815 -10.602 1 66.88 ? C1 EDO 302 B 1 HETATM 2 O O1 EDO . . . D 2 -31.166 -14.129 -10.701 1 62.61 ? O1 EDO 302 B 1 HETATM 3 C C2 EDO . . . D 2 -28.936 -14.925 -11.178 1 71.73 ? C2 EDO 302 B 1 HETATM 4 O O2 EDO . . . D 2 -29.439 -15.262 -12.468 1 76.5 ? O2 EDO 302 B 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 278 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 4 #