data_6G95 # _model_server_result.job_id R0dLxPkWWhqJSmp8pPo7FA _model_server_result.datetime_utc '2024-11-28 05:17:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6g95 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":708}' # _entry.id 6G95 # _exptl.entry_id 6G95 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 370.575 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 10-{2-[(2R)-1-methylpiperidin-2-yl]ethyl}-2-(methylsulfanyl)-10H-phenothiazine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6G95 _cell.length_a 113.97 _cell.length_b 113.97 _cell.length_c 305.66 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6G95 _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_565 -y,x-y+1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 -56.985 98.700915 0 3 'crystal symmetry operation' 3_455 -x+y-1,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 -113.97 0 0 # _struct_asym.details ? _struct_asym.entity_id 7 _struct_asym.id O _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 3 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 3 3 2 BMA NAG C1 O1 . O4 HO4 . sing 3 ? 3 4 3 MAN BMA C1 O1 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n C NAG 1 C 1 NAG B 701 NAG 3 n C NAG 2 C 2 NAG B 702 NAG 3 n C BMA 3 C 3 BMA B 703 BMA 3 n C MAN 4 C 4 MAN B 704 MAN # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 26 A CYS 53 1_555 B SG CYS 108 B CYS 609 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf2 A SG CYS 81 A CYS 108 1_555 A SG CYS 108 A CYS 135 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? disulf ? disulf3 A SG CYS 94 A CYS 121 1_555 A SG CYS 120 A CYS 147 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf4 B SG CYS 10 B CYS 511 1_555 B SG CYS 55 B CYS 556 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? disulf ? disulf5 B SG CYS 100 B CYS 601 1_555 B SG CYS 107 B CYS 608 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? covale ? covale1 A ND2 ASN 201 A ASN 228 1_555 E C1 NAG . A NAG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale2 A ND2 ASN 211 A ASN 238 1_555 F C1 NAG . A NAG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale3 A ND2 ASN 230 A ASN 257 1_555 D C1 NAG . A NAG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.429 ? covale ? covale4 A ND2 ASN 241 A ASN 268 1_555 G C1 NAG . A NAG 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? covale ? covale5 B ND2 ASN 62 B ASN 563 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale6 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale7 C O4 NAG . C NAG 2 1_555 C C1 BMA . C BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale8 C O6 BMA . C BMA 3 1_555 C C1 MAN . C MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.456 ? # _chem_comp.formula 'C21 H26 N2 S2' _chem_comp.formula_weight 370.575 _chem_comp.id RTZ _chem_comp.mon_nstd_flag . _chem_comp.name 10-{2-[(2R)-1-methylpiperidin-2-yl]ethyl}-2-(methylsulfanyl)-10H-phenothiazine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAA NAV RTZ sing 377 n n CAB SAX RTZ sing 378 n n CAC CAD RTZ doub 379 n y CAC CAH RTZ sing 380 n y CAD CAI RTZ sing 381 n y CAE CAF RTZ sing 382 n n CAE CAG RTZ sing 383 n n CAF CAM RTZ sing 384 n n CAG CAP RTZ sing 385 n n CAH CAR RTZ doub 386 n y CAI CAT RTZ doub 387 n y CAJ CAK RTZ doub 388 n y CAJ CAQ RTZ sing 389 n y CAK CAU RTZ sing 390 n y CAL CAN RTZ sing 391 n n CAL CAP RTZ sing 392 n n CAM NAV RTZ sing 393 n n CAN NAW RTZ sing 394 n n CAO CAQ RTZ doub 395 n y CAO CAS RTZ sing 396 n y CAP NAV RTZ sing 397 n n CAQ SAX RTZ sing 398 n n CAR CAT RTZ sing 399 n y CAR NAW RTZ sing 400 n n CAS CAU RTZ doub 401 n y CAS NAW RTZ sing 402 n n CAT SAY RTZ sing 403 n n CAU SAY RTZ sing 404 n n CAA HAA RTZ sing 405 n n CAA HAAA RTZ sing 406 n n CAA HAAB RTZ sing 407 n n CAB HAB RTZ sing 408 n n CAB HABA RTZ sing 409 n n CAB HABB RTZ sing 410 n n CAC HAC RTZ sing 411 n n CAD HAD RTZ sing 412 n n CAE HAE RTZ sing 413 n n CAE HAEA RTZ sing 414 n n CAF HAF RTZ sing 415 n n CAF HAFA RTZ sing 416 n n CAG HAG RTZ sing 417 n n CAG HAGA RTZ sing 418 n n CAH HAH RTZ sing 419 n n CAI HAI RTZ sing 420 n n CAJ HAJ RTZ sing 421 n n CAK HAK RTZ sing 422 n n CAL HAL RTZ sing 423 n n CAL HALA RTZ sing 424 n n CAM HAM RTZ sing 425 n n CAM HAMA RTZ sing 426 n n CAN HAN RTZ sing 427 n n CAN HANA RTZ sing 428 n n CAO HAO RTZ sing 429 n n CAP HAP RTZ sing 430 n n # _atom_sites.entry_id 6G95 _atom_sites.fract_transf_matrix[1][1] 0.008774 _atom_sites.fract_transf_matrix[1][2] 0.005066 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010132 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003272 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 NAG A 1 601 601 NAG NAG . E 4 NAG A 1 602 602 NAG NAG . F 4 NAG A 1 603 603 NAG NAG . G 4 NAG A 1 604 604 NAG NAG . H 5 GOL A 1 605 605 GOL GOL . I 6 DMS A 1 606 607 DMS DMS . J 5 GOL A 1 607 3 GOL GOL . K 6 DMS A 1 608 1 DMS DMS . L 5 GOL B 1 705 1 GOL GOL . M 5 GOL B 1 706 2 GOL GOL . N 6 DMS B 1 707 3 DMS DMS . O 7 RTZ B 1 708 1 RTZ RTZ . P 8 HOH A 1 701 21 HOH HOH . P 8 HOH A 2 702 22 HOH HOH . P 8 HOH A 3 703 717 HOH HOH . P 8 HOH A 4 704 708 HOH HOH . P 8 HOH A 5 705 710 HOH HOH . P 8 HOH A 6 706 35 HOH HOH . P 8 HOH A 7 707 718 HOH HOH . P 8 HOH A 8 708 704 HOH HOH . P 8 HOH A 9 709 713 HOH HOH . P 8 HOH A 10 710 805 HOH HOH . P 8 HOH A 11 711 5 HOH HOH . P 8 HOH A 12 712 40 HOH HOH . P 8 HOH A 13 713 721 HOH HOH . P 8 HOH A 14 714 42 HOH HOH . P 8 HOH A 15 715 712 HOH HOH . P 8 HOH A 16 716 16 HOH HOH . P 8 HOH A 17 717 29 HOH HOH . P 8 HOH A 18 718 30 HOH HOH . P 8 HOH A 19 719 709 HOH HOH . P 8 HOH A 20 720 34 HOH HOH . P 8 HOH A 21 721 39 HOH HOH . P 8 HOH A 22 722 32 HOH HOH . P 8 HOH A 23 723 6 HOH HOH . P 8 HOH A 24 724 716 HOH HOH . P 8 HOH A 25 725 706 HOH HOH . P 8 HOH A 26 726 729 HOH HOH . P 8 HOH A 27 727 23 HOH HOH . P 8 HOH A 28 728 1 HOH HOH . P 8 HOH A 29 729 703 HOH HOH . P 8 HOH A 30 730 714 HOH HOH . P 8 HOH A 31 731 702 HOH HOH . P 8 HOH A 32 732 9 HOH HOH . P 8 HOH A 33 733 20 HOH HOH . P 8 HOH A 34 734 19 HOH HOH . P 8 HOH A 35 735 719 HOH HOH . P 8 HOH A 36 736 24 HOH HOH . P 8 HOH A 37 737 711 HOH HOH . P 8 HOH A 38 738 705 HOH HOH . P 8 HOH A 39 739 727 HOH HOH . P 8 HOH A 40 740 722 HOH HOH . P 8 HOH A 41 741 36 HOH HOH . P 8 HOH A 42 742 724 HOH HOH . P 8 HOH A 43 743 720 HOH HOH . P 8 HOH A 44 744 41 HOH HOH . P 8 HOH A 45 745 31 HOH HOH . P 8 HOH A 46 746 49 HOH HOH . P 8 HOH A 47 747 715 HOH HOH . P 8 HOH A 48 748 723 HOH HOH . P 8 HOH A 49 749 25 HOH HOH . P 8 HOH A 50 750 26 HOH HOH . P 8 HOH A 51 751 730 HOH HOH . P 8 HOH A 52 752 725 HOH HOH . P 8 HOH A 53 753 47 HOH HOH . P 8 HOH A 54 754 728 HOH HOH . P 8 HOH A 55 755 8 HOH HOH . P 8 HOH A 56 756 732 HOH HOH . Q 8 HOH B 1 801 801 HOH HOH . Q 8 HOH B 2 802 808 HOH HOH . Q 8 HOH B 3 803 12 HOH HOH . Q 8 HOH B 4 804 43 HOH HOH . Q 8 HOH B 5 805 18 HOH HOH . Q 8 HOH B 6 806 15 HOH HOH . Q 8 HOH B 7 807 7 HOH HOH . Q 8 HOH B 8 808 701 HOH HOH . Q 8 HOH B 9 809 806 HOH HOH . Q 8 HOH B 10 810 802 HOH HOH . Q 8 HOH B 11 811 44 HOH HOH . Q 8 HOH B 12 812 13 HOH HOH . Q 8 HOH B 13 813 816 HOH HOH . Q 8 HOH B 14 814 804 HOH HOH . Q 8 HOH B 15 815 14 HOH HOH . Q 8 HOH B 16 816 27 HOH HOH . Q 8 HOH B 17 817 37 HOH HOH . Q 8 HOH B 18 818 17 HOH HOH . Q 8 HOH B 19 819 803 HOH HOH . Q 8 HOH B 20 820 807 HOH HOH . Q 8 HOH B 21 821 810 HOH HOH . Q 8 HOH B 22 822 11 HOH HOH . Q 8 HOH B 23 823 48 HOH HOH . Q 8 HOH B 24 824 812 HOH HOH . Q 8 HOH B 25 825 28 HOH HOH . Q 8 HOH B 26 826 809 HOH HOH . Q 8 HOH B 27 827 3 HOH HOH . Q 8 HOH B 28 828 2 HOH HOH . Q 8 HOH B 29 829 811 HOH HOH . Q 8 HOH B 30 830 813 HOH HOH . Q 8 HOH B 31 831 45 HOH HOH . Q 8 HOH B 32 832 814 HOH HOH . Q 8 HOH B 33 833 10 HOH HOH . Q 8 HOH B 34 834 815 HOH HOH . Q 8 HOH B 35 835 46 HOH HOH . Q 8 HOH B 36 836 818 HOH HOH . Q 8 HOH B 37 837 821 HOH HOH . Q 8 HOH B 38 838 817 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA RTZ . . . O 7 -43.85 13.298 -6.094 1 100.63 ? CAA RTZ 708 B 1 HETATM 2 C CAB RTZ . . . O 7 -52.612 12.776 -1.342 1 164.9 ? CAB RTZ 708 B 1 HETATM 3 C CAC RTZ . . . O 7 -43.719 7.792 -3.305 1 142.12 ? CAC RTZ 708 B 1 HETATM 4 C CAD RTZ . . . O 7 -44.432 6.795 -3.962 1 142.24 ? CAD RTZ 708 B 1 HETATM 5 C CAE RTZ . . . O 7 -47.119 12.01 -8.431 1 86.99 ? CAE RTZ 708 B 1 HETATM 6 C CAF RTZ . . . O 7 -46.241 13.073 -8.999 1 80.54 ? CAF RTZ 708 B 1 HETATM 7 C CAG RTZ . . . O 7 -47.304 12.134 -6.951 1 89.3 ? CAG RTZ 708 B 1 HETATM 8 C CAH RTZ . . . O 7 -44.316 9.019 -3.047 1 143.31 ? CAH RTZ 708 B 1 HETATM 9 C CAI RTZ . . . O 7 -45.744 7.017 -4.368 1 144.25 ? CAI RTZ 708 B 1 HETATM 10 C CAJ RTZ . . . O 7 -50.774 10.859 -3.11 1 145.69 ? CAJ RTZ 708 B 1 HETATM 11 C CAK RTZ . . . O 7 -50.132 9.827 -3.781 1 140.46 ? CAK RTZ 708 B 1 HETATM 12 C CAL RTZ . . . O 7 -46.465 12.603 -4.735 1 108.83 ? CAL RTZ 708 B 1 HETATM 13 C CAM RTZ . . . O 7 -44.946 13.213 -8.208 1 93.78 ? CAM RTZ 708 B 1 HETATM 14 C CAN RTZ . . . O 7 -45.64 11.802 -3.728 1 114.62 ? CAN RTZ 708 B 1 HETATM 15 C CAO RTZ . . . O 7 -48.647 11.785 -2.459 1 142.68 ? CAO RTZ 708 B 1 HETATM 16 C CAP RTZ . . . O 7 -46.011 12.325 -6.158 1 100.93 ? CAP RTZ 708 B 1 HETATM 17 C CAQ RTZ . . . O 7 -50.031 11.836 -2.451 1 147.15 ? CAQ RTZ 708 B 1 HETATM 18 C CAR RTZ . . . O 7 -45.636 9.241 -3.46 1 141.37 ? CAR RTZ 708 B 1 HETATM 19 C CAS RTZ . . . O 7 -48.002 10.741 -3.13 1 135.38 ? CAS RTZ 708 B 1 HETATM 20 C CAT RTZ . . . O 7 -46.353 8.25 -4.116 1 142.73 ? CAT RTZ 708 B 1 HETATM 21 C CAU RTZ . . . O 7 -48.738 9.775 -3.796 1 135.58 ? CAU RTZ 708 B 1 HETATM 22 N NAV RTZ . . . O 7 -45.151 13.406 -6.737 1 103.13 ? NAV RTZ 708 B 1 HETATM 23 N NAW RTZ . . . O 7 -46.362 10.672 -3.155 1 129.39 ? NAW RTZ 708 B 1 HETATM 24 S SAX RTZ . . . O 7 -50.859 13.189 -1.57 1 151.27 ? SAX RTZ 708 B 1 HETATM 25 S SAY RTZ . . . O 7 -47.933 8.548 -4.588 1 132.39 ? SAY RTZ 708 B 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 25 #