data_6G9B
#
_model_server_result.job_id            ouIeSUPkTrkimM8eEFmJsQ 
_model_server_result.datetime_utc      '2024-11-28 02:20:39' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6g9b 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":610}' 
#
_entry.id    6G9B 
#
_exptl.entry_id    6G9B 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              78.133 
_entity.id                          7 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'DIMETHYL SULFOXIDE' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            6G9B 
_cell.length_a            114.216 
_cell.length_b            114.216 
_cell.length_c            305.552 
_cell.Z_PDB               18 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6G9B 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        155 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'H 3 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2,3 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_565 -y,x-y+1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 -57.108 98.913958 0 
3 'crystal symmetry operation' 3_455 -x+y-1,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 -114.216 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 7 M N N 
? 7 N N N 
? 7 R N N 
#
_pdbx_entity_branch.entity_id    3 
_pdbx_entity_branch.type         oligosaccharide 
#
_pdbx_entity_branch_link.link_id                     1 
_pdbx_entity_branch_link.details                     ? 
_pdbx_entity_branch_link.entity_id                   3 
_pdbx_entity_branch_link.entity_branch_list_num_1    2 
_pdbx_entity_branch_link.entity_branch_list_num_2    1 
_pdbx_entity_branch_link.comp_id_1                   NAG 
_pdbx_entity_branch_link.comp_id_2                   NAG 
_pdbx_entity_branch_link.atom_id_1                   C1 
_pdbx_entity_branch_link.leaving_atom_id_1           O1 
_pdbx_entity_branch_link.atom_stereo_config_1        . 
_pdbx_entity_branch_link.atom_id_2                   O4 
_pdbx_entity_branch_link.leaving_atom_id_2           HO4 
_pdbx_entity_branch_link.atom_stereo_config_2        . 
_pdbx_entity_branch_link.value_order                 sing 
#
loop_
_pdbx_branch_scheme.entity_id
_pdbx_branch_scheme.hetero
_pdbx_branch_scheme.asym_id
_pdbx_branch_scheme.mon_id
_pdbx_branch_scheme.num
_pdbx_branch_scheme.pdb_asym_id
_pdbx_branch_scheme.pdb_seq_num
_pdbx_branch_scheme.pdb_mon_id
_pdbx_branch_scheme.auth_asym_id
_pdbx_branch_scheme.auth_seq_num
_pdbx_branch_scheme.auth_mon_id
3 n C NAG 1 C 1 NAG D 621 NAG 
3 n C NAG 2 C 2 NAG N 16 NAG 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 26 A CYS 53 1_555 B SG CYS 108 B CYS 609 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
disulf ? disulf2 A SG CYS 81 A CYS 108 1_555 A SG CYS 108 A CYS 135 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf3 A SG CYS 94 A CYS 121 1_555 A SG CYS 120 A CYS 147 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf4 B SG CYS 10 B CYS 511 1_555 B SG CYS 55 B CYS 556 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? 
disulf ? disulf5 B SG CYS 100 B CYS 601 1_555 B SG CYS 107 B CYS 608 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? 
covale ? covale1 A ND2 ASN 201 A ASN 228 1_555 F C1 NAG . A NAG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.454 ? 
covale ? covale2 A ND2 ASN 211 A ASN 238 1_555 E C1 NAG . A NAG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? 
covale ? covale3 A ND2 ASN 230 A ASN 257 1_555 D C1 NAG . A NAG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? 
covale ? covale4 A ND2 ASN 241 A ASN 268 1_555 G C1 NAG . A NAG 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? 
covale ? covale5 B ND2 ASN 62 B ASN 563 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? 
covale ? covale6 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? 
#
_chem_comp.formula           'C2 H6 O S' 
_chem_comp.formula_weight    78.133 
_chem_comp.id                DMS 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'DIMETHYL SULFOXIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
S O DMS doub 83 n n 
S C1 DMS sing 84 n n 
S C2 DMS sing 85 n n 
C1 H11 DMS sing 86 n n 
C1 H12 DMS sing 87 n n 
C1 H13 DMS sing 88 n n 
C2 H21 DMS sing 89 n n 
C2 H22 DMS sing 90 n n 
C2 H23 DMS sing 91 n n 
#
_atom_sites.entry_id                     6G9B 
_atom_sites.fract_transf_matrix[1][1]    0.008755 
_atom_sites.fract_transf_matrix[1][2]    0.005055 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01011 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003273 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 NAG A 1 601 2 NAG NAG . 
E 4 NAG A 1 602 11 NAG NAG . 
F 4 NAG A 1 603 14 NAG NAG . 
G 4 NAG A 1 604 15 NAG NAG . 
H 5 GOL A 1 605 1 GOL GOL . 
I 5 GOL A 1 606 2 GOL GOL . 
J 5 GOL A 1 607 5 GOL GOL . 
K 5 GOL A 1 608 6 GOL GOL . 
L 6 IXX A 1 609 1 IXX IXX . 
M 7 DMS A 1 610 2 DMS DMS . 
N 7 DMS A 1 611 3 DMS DMS . 
O 5 GOL B 1 703 3 GOL GOL . 
P 5 GOL B 1 704 4 GOL GOL . 
Q 6 IXX B 1 705 2 IXX IXX . 
R 7 DMS B 1 706 1 DMS DMS . 
S 8 HOH A 1 701 51 HOH HOH . 
S 8 HOH A 2 702 62 HOH HOH . 
S 8 HOH A 3 703 120 HOH HOH . 
S 8 HOH A 4 704 133 HOH HOH . 
S 8 HOH A 5 705 118 HOH HOH . 
S 8 HOH A 6 706 58 HOH HOH . 
S 8 HOH A 7 707 4 HOH HOH . 
S 8 HOH A 8 708 50 HOH HOH . 
S 8 HOH A 9 709 12 HOH HOH . 
S 8 HOH A 10 710 76 HOH HOH . 
S 8 HOH A 11 711 38 HOH HOH . 
S 8 HOH A 12 712 18 HOH HOH . 
S 8 HOH A 13 713 20 HOH HOH . 
S 8 HOH A 14 714 61 HOH HOH . 
S 8 HOH A 15 715 73 HOH HOH . 
S 8 HOH A 16 716 7 HOH HOH . 
S 8 HOH A 17 717 11 HOH HOH . 
S 8 HOH A 18 718 1 HOH HOH . 
S 8 HOH A 19 719 115 HOH HOH . 
S 8 HOH A 20 720 6 HOH HOH . 
S 8 HOH A 21 721 41 HOH HOH . 
S 8 HOH A 22 722 119 HOH HOH . 
S 8 HOH A 23 723 5 HOH HOH . 
S 8 HOH A 24 724 113 HOH HOH . 
S 8 HOH A 25 725 146 HOH HOH . 
S 8 HOH A 26 726 40 HOH HOH . 
S 8 HOH A 27 727 17 HOH HOH . 
S 8 HOH A 28 728 37 HOH HOH . 
S 8 HOH A 29 729 8 HOH HOH . 
S 8 HOH A 30 730 25 HOH HOH . 
S 8 HOH A 31 731 2 HOH HOH . 
S 8 HOH A 32 732 9 HOH HOH . 
S 8 HOH A 33 733 10 HOH HOH . 
S 8 HOH A 34 734 69 HOH HOH . 
S 8 HOH A 35 735 31 HOH HOH . 
S 8 HOH A 36 736 100 HOH HOH . 
S 8 HOH A 37 737 56 HOH HOH . 
S 8 HOH A 38 738 135 HOH HOH . 
S 8 HOH A 39 739 54 HOH HOH . 
S 8 HOH A 40 740 85 HOH HOH . 
S 8 HOH A 41 741 80 HOH HOH . 
S 8 HOH A 42 742 14 HOH HOH . 
S 8 HOH A 43 743 134 HOH HOH . 
S 8 HOH A 44 744 34 HOH HOH . 
S 8 HOH A 45 745 79 HOH HOH . 
S 8 HOH A 46 746 68 HOH HOH . 
S 8 HOH A 47 747 88 HOH HOH . 
S 8 HOH A 48 748 23 HOH HOH . 
S 8 HOH A 49 749 33 HOH HOH . 
S 8 HOH A 50 750 84 HOH HOH . 
S 8 HOH A 51 751 26 HOH HOH . 
S 8 HOH A 52 752 15 HOH HOH . 
S 8 HOH A 53 753 152 HOH HOH . 
S 8 HOH A 54 754 148 HOH HOH . 
S 8 HOH A 55 755 97 HOH HOH . 
S 8 HOH A 56 756 72 HOH HOH . 
S 8 HOH A 57 757 121 HOH HOH . 
S 8 HOH A 58 758 151 HOH HOH . 
S 8 HOH A 59 759 125 HOH HOH . 
S 8 HOH A 60 760 156 HOH HOH . 
S 8 HOH A 61 761 141 HOH HOH . 
S 8 HOH A 62 762 102 HOH HOH . 
S 8 HOH A 63 763 46 HOH HOH . 
S 8 HOH A 64 764 114 HOH HOH . 
S 8 HOH A 65 765 83 HOH HOH . 
S 8 HOH A 66 766 22 HOH HOH . 
S 8 HOH A 67 767 155 HOH HOH . 
S 8 HOH A 68 768 145 HOH HOH . 
S 8 HOH A 69 769 153 HOH HOH . 
S 8 HOH A 70 770 105 HOH HOH . 
S 8 HOH A 71 771 144 HOH HOH . 
S 8 HOH A 72 772 154 HOH HOH . 
S 8 HOH A 73 773 123 HOH HOH . 
S 8 HOH A 74 774 42 HOH HOH . 
S 8 HOH A 75 775 142 HOH HOH . 
S 8 HOH A 76 776 158 HOH HOH . 
S 8 HOH A 77 777 157 HOH HOH . 
S 8 HOH A 78 778 160 HOH HOH . 
S 8 HOH A 79 779 159 HOH HOH . 
S 8 HOH A 80 780 53 HOH HOH . 
S 8 HOH A 81 781 28 HOH HOH . 
S 8 HOH A 82 782 111 HOH HOH . 
T 8 HOH B 1 801 77 HOH HOH . 
T 8 HOH B 2 802 67 HOH HOH . 
T 8 HOH B 3 803 71 HOH HOH . 
T 8 HOH B 4 804 96 HOH HOH . 
T 8 HOH B 5 805 16 HOH HOH . 
T 8 HOH B 6 806 64 HOH HOH . 
T 8 HOH B 7 807 19 HOH HOH . 
T 8 HOH B 8 808 3 HOH HOH . 
T 8 HOH B 9 809 52 HOH HOH . 
T 8 HOH B 10 810 63 HOH HOH . 
T 8 HOH B 11 811 24 HOH HOH . 
T 8 HOH B 12 812 59 HOH HOH . 
T 8 HOH B 13 813 21 HOH HOH . 
T 8 HOH B 14 814 29 HOH HOH . 
T 8 HOH B 15 815 55 HOH HOH . 
T 8 HOH B 16 816 32 HOH HOH . 
T 8 HOH B 17 817 47 HOH HOH . 
T 8 HOH B 18 818 49 HOH HOH . 
T 8 HOH B 19 819 150 HOH HOH . 
T 8 HOH B 20 820 106 HOH HOH . 
T 8 HOH B 21 821 57 HOH HOH . 
T 8 HOH B 22 822 44 HOH HOH . 
T 8 HOH B 23 823 13 HOH HOH . 
T 8 HOH B 24 824 143 HOH HOH . 
T 8 HOH B 25 825 149 HOH HOH . 
T 8 HOH B 26 826 35 HOH HOH . 
T 8 HOH B 27 827 110 HOH HOH . 
T 8 HOH B 28 828 108 HOH HOH . 
T 8 HOH B 29 829 81 HOH HOH . 
T 8 HOH B 30 830 27 HOH HOH . 
T 8 HOH B 31 831 60 HOH HOH . 
T 8 HOH B 32 832 112 HOH HOH . 
T 8 HOH B 33 833 138 HOH HOH . 
T 8 HOH B 34 834 36 HOH HOH . 
T 8 HOH B 35 835 99 HOH HOH . 
T 8 HOH B 36 836 161 HOH HOH . 
T 8 HOH B 37 837 65 HOH HOH . 
T 8 HOH B 38 838 140 HOH HOH . 
T 8 HOH B 39 839 162 HOH HOH . 
T 8 HOH B 40 840 137 HOH HOH . 
T 8 HOH B 41 841 139 HOH HOH . 
T 8 HOH B 42 842 43 HOH HOH . 
T 8 HOH B 43 843 130 HOH HOH . 
T 8 HOH B 44 844 45 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 S S DMS . . . M 7 -65.404 22.616 -6.978 1 129.73 ? S DMS 610 A 1 
HETATM 2 O O DMS . . . M 7 -64.587 21.589 -6.259 1 124.98 ? O DMS 610 A 1 
HETATM 3 C C1 DMS . . . M 7 -64.373 23.524 -8.165 1 128.41 ? C1 DMS 610 A 1 
HETATM 4 C C2 DMS . . . M 7 -66.585 21.811 -8.099 1 126.96 ? C2 DMS 610 A 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           262 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           4 
#