data_6G9B # _model_server_result.job_id OJgPRcC6vqTmvfW_0KvkNg _model_server_result.datetime_utc '2024-10-14 03:19:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6g9b # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Q","auth_seq_id":705}' # _entry.id 6G9B # _exptl.entry_id 6G9B _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 280.407 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-(5H-DIBENZO[B,F]AZEPIN-5-YL)-N,N-DIMETHYLPROPAN-1-AMINE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6G9B _cell.length_a 114.216 _cell.length_b 114.216 _cell.length_c 305.552 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6G9B _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_565 -y,x-y+1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 -57.108 98.913958 0 3 'crystal symmetry operation' 3_455 -x+y-1,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 -114.216 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 L N N ? 6 Q N N # _pdbx_entity_branch.entity_id 3 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 3 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n C NAG 1 C 1 NAG D 621 NAG 3 n C NAG 2 C 2 NAG N 16 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 26 A CYS 53 1_555 B SG CYS 108 B CYS 609 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf2 A SG CYS 81 A CYS 108 1_555 A SG CYS 108 A CYS 135 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf3 A SG CYS 94 A CYS 121 1_555 A SG CYS 120 A CYS 147 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf4 B SG CYS 10 B CYS 511 1_555 B SG CYS 55 B CYS 556 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf5 B SG CYS 100 B CYS 601 1_555 B SG CYS 107 B CYS 608 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? covale ? covale1 A ND2 ASN 201 A ASN 228 1_555 F C1 NAG . A NAG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.454 ? covale ? covale2 A ND2 ASN 211 A ASN 238 1_555 E C1 NAG . A NAG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale3 A ND2 ASN 230 A ASN 257 1_555 D C1 NAG . A NAG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? covale ? covale4 A ND2 ASN 241 A ASN 268 1_555 G C1 NAG . A NAG 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale5 B ND2 ASN 62 B ASN 563 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? covale ? covale6 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? # _chem_comp.formula 'C19 H24 N2' _chem_comp.formula_weight 280.407 _chem_comp.id IXX _chem_comp.mon_nstd_flag . _chem_comp.name 3-(5H-DIBENZO[B,F]AZEPIN-5-YL)-N,N-DIMETHYLPROPAN-1-AMINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 5-(3-(dimethylamino)propyl)-10,11-dihydro-5H-dibenz[b,f]azepine # _atom_sites.entry_id 6G9B _atom_sites.fract_transf_matrix[1][1] 0.008755 _atom_sites.fract_transf_matrix[1][2] 0.005055 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01011 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003273 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 NAG A 1 601 2 NAG NAG . E 4 NAG A 1 602 11 NAG NAG . F 4 NAG A 1 603 14 NAG NAG . G 4 NAG A 1 604 15 NAG NAG . H 5 GOL A 1 605 1 GOL GOL . I 5 GOL A 1 606 2 GOL GOL . J 5 GOL A 1 607 5 GOL GOL . K 5 GOL A 1 608 6 GOL GOL . L 6 IXX A 1 609 1 IXX IXX . M 7 DMS A 1 610 2 DMS DMS . N 7 DMS A 1 611 3 DMS DMS . O 5 GOL B 1 703 3 GOL GOL . P 5 GOL B 1 704 4 GOL GOL . Q 6 IXX B 1 705 2 IXX IXX . R 7 DMS B 1 706 1 DMS DMS . S 8 HOH A 1 701 51 HOH HOH . S 8 HOH A 2 702 62 HOH HOH . S 8 HOH A 3 703 120 HOH HOH . S 8 HOH A 4 704 133 HOH HOH . S 8 HOH A 5 705 118 HOH HOH . S 8 HOH A 6 706 58 HOH HOH . S 8 HOH A 7 707 4 HOH HOH . S 8 HOH A 8 708 50 HOH HOH . S 8 HOH A 9 709 12 HOH HOH . S 8 HOH A 10 710 76 HOH HOH . S 8 HOH A 11 711 38 HOH HOH . S 8 HOH A 12 712 18 HOH HOH . S 8 HOH A 13 713 20 HOH HOH . S 8 HOH A 14 714 61 HOH HOH . S 8 HOH A 15 715 73 HOH HOH . S 8 HOH A 16 716 7 HOH HOH . S 8 HOH A 17 717 11 HOH HOH . S 8 HOH A 18 718 1 HOH HOH . S 8 HOH A 19 719 115 HOH HOH . S 8 HOH A 20 720 6 HOH HOH . S 8 HOH A 21 721 41 HOH HOH . S 8 HOH A 22 722 119 HOH HOH . S 8 HOH A 23 723 5 HOH HOH . S 8 HOH A 24 724 113 HOH HOH . S 8 HOH A 25 725 146 HOH HOH . S 8 HOH A 26 726 40 HOH HOH . S 8 HOH A 27 727 17 HOH HOH . S 8 HOH A 28 728 37 HOH HOH . S 8 HOH A 29 729 8 HOH HOH . S 8 HOH A 30 730 25 HOH HOH . S 8 HOH A 31 731 2 HOH HOH . S 8 HOH A 32 732 9 HOH HOH . S 8 HOH A 33 733 10 HOH HOH . S 8 HOH A 34 734 69 HOH HOH . S 8 HOH A 35 735 31 HOH HOH . S 8 HOH A 36 736 100 HOH HOH . S 8 HOH A 37 737 56 HOH HOH . S 8 HOH A 38 738 135 HOH HOH . S 8 HOH A 39 739 54 HOH HOH . S 8 HOH A 40 740 85 HOH HOH . S 8 HOH A 41 741 80 HOH HOH . S 8 HOH A 42 742 14 HOH HOH . S 8 HOH A 43 743 134 HOH HOH . S 8 HOH A 44 744 34 HOH HOH . S 8 HOH A 45 745 79 HOH HOH . S 8 HOH A 46 746 68 HOH HOH . S 8 HOH A 47 747 88 HOH HOH . S 8 HOH A 48 748 23 HOH HOH . S 8 HOH A 49 749 33 HOH HOH . S 8 HOH A 50 750 84 HOH HOH . S 8 HOH A 51 751 26 HOH HOH . S 8 HOH A 52 752 15 HOH HOH . S 8 HOH A 53 753 152 HOH HOH . S 8 HOH A 54 754 148 HOH HOH . S 8 HOH A 55 755 97 HOH HOH . S 8 HOH A 56 756 72 HOH HOH . S 8 HOH A 57 757 121 HOH HOH . S 8 HOH A 58 758 151 HOH HOH . S 8 HOH A 59 759 125 HOH HOH . S 8 HOH A 60 760 156 HOH HOH . S 8 HOH A 61 761 141 HOH HOH . S 8 HOH A 62 762 102 HOH HOH . S 8 HOH A 63 763 46 HOH HOH . S 8 HOH A 64 764 114 HOH HOH . S 8 HOH A 65 765 83 HOH HOH . S 8 HOH A 66 766 22 HOH HOH . S 8 HOH A 67 767 155 HOH HOH . S 8 HOH A 68 768 145 HOH HOH . S 8 HOH A 69 769 153 HOH HOH . S 8 HOH A 70 770 105 HOH HOH . S 8 HOH A 71 771 144 HOH HOH . S 8 HOH A 72 772 154 HOH HOH . S 8 HOH A 73 773 123 HOH HOH . S 8 HOH A 74 774 42 HOH HOH . S 8 HOH A 75 775 142 HOH HOH . S 8 HOH A 76 776 158 HOH HOH . S 8 HOH A 77 777 157 HOH HOH . S 8 HOH A 78 778 160 HOH HOH . S 8 HOH A 79 779 159 HOH HOH . S 8 HOH A 80 780 53 HOH HOH . S 8 HOH A 81 781 28 HOH HOH . S 8 HOH A 82 782 111 HOH HOH . T 8 HOH B 1 801 77 HOH HOH . T 8 HOH B 2 802 67 HOH HOH . T 8 HOH B 3 803 71 HOH HOH . T 8 HOH B 4 804 96 HOH HOH . T 8 HOH B 5 805 16 HOH HOH . T 8 HOH B 6 806 64 HOH HOH . T 8 HOH B 7 807 19 HOH HOH . T 8 HOH B 8 808 3 HOH HOH . T 8 HOH B 9 809 52 HOH HOH . T 8 HOH B 10 810 63 HOH HOH . T 8 HOH B 11 811 24 HOH HOH . T 8 HOH B 12 812 59 HOH HOH . T 8 HOH B 13 813 21 HOH HOH . T 8 HOH B 14 814 29 HOH HOH . T 8 HOH B 15 815 55 HOH HOH . T 8 HOH B 16 816 32 HOH HOH . T 8 HOH B 17 817 47 HOH HOH . T 8 HOH B 18 818 49 HOH HOH . T 8 HOH B 19 819 150 HOH HOH . T 8 HOH B 20 820 106 HOH HOH . T 8 HOH B 21 821 57 HOH HOH . T 8 HOH B 22 822 44 HOH HOH . T 8 HOH B 23 823 13 HOH HOH . T 8 HOH B 24 824 143 HOH HOH . T 8 HOH B 25 825 149 HOH HOH . T 8 HOH B 26 826 35 HOH HOH . T 8 HOH B 27 827 110 HOH HOH . T 8 HOH B 28 828 108 HOH HOH . T 8 HOH B 29 829 81 HOH HOH . T 8 HOH B 30 830 27 HOH HOH . T 8 HOH B 31 831 60 HOH HOH . T 8 HOH B 32 832 112 HOH HOH . T 8 HOH B 33 833 138 HOH HOH . T 8 HOH B 34 834 36 HOH HOH . T 8 HOH B 35 835 99 HOH HOH . T 8 HOH B 36 836 161 HOH HOH . T 8 HOH B 37 837 65 HOH HOH . T 8 HOH B 38 838 140 HOH HOH . T 8 HOH B 39 839 162 HOH HOH . T 8 HOH B 40 840 137 HOH HOH . T 8 HOH B 41 841 139 HOH HOH . T 8 HOH B 42 842 43 HOH HOH . T 8 HOH B 43 843 130 HOH HOH . T 8 HOH B 44 844 45 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C11 IXX . . . Q 6 -42.952 15.254 -7.182 1 141.75 ? C11 IXX 705 B 1 HETATM 2 C C10 IXX . . . Q 6 -43.183 14.339 -8.21 1 137.31 ? C10 IXX 705 B 1 HETATM 3 C C9 IXX . . . Q 6 -44.331 14.454 -8.996 1 133.11 ? C9 IXX 705 B 1 HETATM 4 C C8 IXX . . . Q 6 -45.238 15.467 -8.764 1 132.76 ? C8 IXX 705 B 1 HETATM 5 C C7 IXX . . . Q 6 -45.016 16.382 -7.74 1 135.85 ? C7 IXX 705 B 1 HETATM 6 C C2 IXX . . . Q 6 -42.542 13.186 -3.069 1 147.21 ? C2 IXX 705 B 1 HETATM 7 C C6 IXX . . . Q 6 -43.619 17.297 -5.795 1 140.84 ? C6 IXX 705 B 1 HETATM 8 C C5 IXX . . . Q 6 -42.423 17.102 -4.848 1 141.39 ? C5 IXX 705 B 1 HETATM 9 N N1 IXX . . . Q 6 -41.795 15.304 -6.237 1 145.93 ? N1 IXX 705 B 1 HETATM 10 C C3 IXX . . . Q 6 -42.918 14.257 -2.241 1 145.65 ? C3 IXX 705 B 1 HETATM 11 N N2 IXX . . . Q 6 -37.712 17.424 -7.735 1 143.79 ? N2 IXX 705 B 1 HETATM 12 C C4 IXX . . . Q 6 -42.91 15.557 -2.732 1 144.11 ? C4 IXX 705 B 1 HETATM 13 C C1 IXX . . . Q 6 -42.155 13.422 -4.402 1 147.1 ? C1 IXX 705 B 1 HETATM 14 C C12 IXX . . . Q 6 -43.865 16.264 -6.956 1 139.63 ? C12 IXX 705 B 1 HETATM 15 C C13 IXX . . . Q 6 -42.519 15.793 -4.081 1 143.92 ? C13 IXX 705 B 1 HETATM 16 C C14 IXX . . . Q 6 -42.142 14.745 -4.892 1 145.96 ? C14 IXX 705 B 1 HETATM 17 C C15 IXX . . . Q 6 -40.529 14.879 -6.803 1 145.74 ? C15 IXX 705 B 1 HETATM 18 C C16 IXX . . . Q 6 -39.85 16.152 -7.459 1 144.31 ? C16 IXX 705 B 1 HETATM 19 C C17 IXX . . . Q 6 -38.308 16.09 -7.317 1 144.77 ? C17 IXX 705 B 1 HETATM 20 C C18 IXX . . . Q 6 -38.036 18.432 -6.737 1 143.3 ? C18 IXX 705 B 1 HETATM 21 C C19 IXX . . . Q 6 -36.261 17.291 -7.871 1 141.2 ? C19 IXX 705 B 1 # _model_server_stats.io_time_ms 32 _model_server_stats.parse_time_ms 48 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 511 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 21 #