data_6G9F # _model_server_result.job_id D-P7QHaWdWdTjQKt2QwaVg _model_server_result.datetime_utc '2024-10-11 03:13:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6g9f # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1330}' # _entry.id 6G9F # _exptl.entry_id 6G9F _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 267.26 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2S,5R)-1-formyl-5-[(sulfooxy)amino]piperidine-2-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6G9F _cell.length_a 125.078 _cell.length_b 182.875 _cell.length_c 74.767 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6G9F _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id OG _struct_conn.ptnr1_label_comp_id SER _struct_conn.ptnr1_label_seq_id 276 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id SER _struct_conn.ptnr1_auth_seq_id 330 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id CAN _struct_conn.ptnr2_label_comp_id NXL _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id NXL _struct_conn.ptnr2_auth_seq_id 1330 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.441 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C7 H13 N3 O6 S' _chem_comp.formula_weight 267.26 _chem_comp.id NXL _chem_comp.mon_nstd_flag . _chem_comp.name (2S,5R)-1-formyl-5-[(sulfooxy)amino]piperidine-2-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'avibactam, bound form;NXL104, bound form' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag NAK CAO NXL sing 224 n n CAJ CAO NXL sing 225 n n CAJ N NXL sing 226 n n OAL SAR NXL sing 227 n n CAO CAH NXL sing 228 n n CAN N NXL sing 229 n n CAN OAC NXL doub 230 n n OAG SAR NXL doub 231 n n N CA NXL sing 232 n n SAR OAE NXL doub 233 n n SAR OAD NXL sing 234 n n O C NXL doub 235 n n CAH CB NXL sing 236 n n CA C NXL sing 237 n n CA CB NXL sing 238 n n C NAA NXL sing 239 n n NAK OAL NXL sing 240 n n CAN H1 NXL sing 241 n n CAJ H2 NXL sing 242 n n CAJ H3 NXL sing 243 n n CA H4 NXL sing 244 n n NAA H5 NXL sing 245 n n NAA H6 NXL sing 246 n n CB H7 NXL sing 247 n n CB H8 NXL sing 248 n n CAH H9 NXL sing 249 n n CAH H10 NXL sing 250 n n CAO H11 NXL sing 251 n n NAK H12 NXL sing 252 n n OAD H13 NXL sing 253 n n # _atom_sites.entry_id 6G9F _atom_sites.fract_transf_matrix[1][1] 0.007995 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005468 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013375 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NXL A 1 1330 1330 NXL ERQ . C 3 HOH A 1 701 701 HOH HOH . C 3 HOH A 2 702 702 HOH HOH . C 3 HOH A 3 703 703 HOH HOH . C 3 HOH A 4 704 704 HOH HOH . C 3 HOH A 5 705 705 HOH HOH . C 3 HOH A 6 706 706 HOH HOH . C 3 HOH A 7 707 707 HOH HOH . C 3 HOH A 8 708 708 HOH HOH . C 3 HOH A 9 709 709 HOH HOH . C 3 HOH A 10 710 710 HOH HOH . C 3 HOH A 11 711 711 HOH HOH . C 3 HOH A 12 712 712 HOH HOH . C 3 HOH A 13 713 713 HOH HOH . C 3 HOH A 14 714 714 HOH HOH . C 3 HOH A 15 715 715 HOH HOH . C 3 HOH A 16 716 716 HOH HOH . C 3 HOH A 17 717 717 HOH HOH . C 3 HOH A 18 718 718 HOH HOH . C 3 HOH A 19 719 719 HOH HOH . C 3 HOH A 20 720 720 HOH HOH . C 3 HOH A 21 721 721 HOH HOH . C 3 HOH A 22 722 722 HOH HOH . C 3 HOH A 23 723 723 HOH HOH . C 3 HOH A 24 724 724 HOH HOH . C 3 HOH A 25 725 725 HOH HOH . C 3 HOH A 26 726 726 HOH HOH . C 3 HOH A 27 727 727 HOH HOH . C 3 HOH A 28 728 728 HOH HOH . C 3 HOH A 29 729 729 HOH HOH . C 3 HOH A 30 730 730 HOH HOH . C 3 HOH A 31 731 731 HOH HOH . C 3 HOH A 32 732 732 HOH HOH . C 3 HOH A 33 733 733 HOH HOH . C 3 HOH A 34 734 734 HOH HOH . C 3 HOH A 35 735 735 HOH HOH . C 3 HOH A 36 736 736 HOH HOH . C 3 HOH A 37 737 737 HOH HOH . C 3 HOH A 38 738 738 HOH HOH . C 3 HOH A 39 739 739 HOH HOH . C 3 HOH A 40 740 740 HOH HOH . C 3 HOH A 41 741 741 HOH HOH . C 3 HOH A 42 742 742 HOH HOH . C 3 HOH A 43 743 743 HOH HOH . C 3 HOH A 44 744 744 HOH HOH . C 3 HOH A 45 745 745 HOH HOH . C 3 HOH A 46 746 746 HOH HOH . C 3 HOH A 47 747 747 HOH HOH . C 3 HOH A 48 748 748 HOH HOH . C 3 HOH A 49 749 749 HOH HOH . C 3 HOH A 50 750 750 HOH HOH . C 3 HOH A 51 751 751 HOH HOH . C 3 HOH A 52 752 752 HOH HOH . C 3 HOH A 53 753 753 HOH HOH . C 3 HOH A 54 754 754 HOH HOH . C 3 HOH A 55 755 755 HOH HOH . C 3 HOH A 56 756 756 HOH HOH . C 3 HOH A 57 757 757 HOH HOH . C 3 HOH A 58 758 758 HOH HOH . C 3 HOH A 59 759 759 HOH HOH . C 3 HOH A 60 760 760 HOH HOH . C 3 HOH A 61 761 761 HOH HOH . C 3 HOH A 62 762 762 HOH HOH . C 3 HOH A 63 763 763 HOH HOH . C 3 HOH A 64 764 764 HOH HOH . C 3 HOH A 65 765 765 HOH HOH . C 3 HOH A 66 766 766 HOH HOH . C 3 HOH A 67 767 767 HOH HOH . C 3 HOH A 68 768 768 HOH HOH . C 3 HOH A 69 769 769 HOH HOH . C 3 HOH A 70 770 770 HOH HOH . C 3 HOH A 71 771 771 HOH HOH . C 3 HOH A 72 772 772 HOH HOH . C 3 HOH A 73 773 773 HOH HOH . C 3 HOH A 74 774 774 HOH HOH . C 3 HOH A 75 775 775 HOH HOH . C 3 HOH A 76 776 776 HOH HOH . C 3 HOH A 77 777 777 HOH HOH . C 3 HOH A 78 778 778 HOH HOH . C 3 HOH A 79 779 779 HOH HOH . C 3 HOH A 80 780 780 HOH HOH . C 3 HOH A 81 781 781 HOH HOH . C 3 HOH A 82 782 782 HOH HOH . C 3 HOH A 83 783 783 HOH HOH . C 3 HOH A 84 784 784 HOH HOH . C 3 HOH A 85 785 785 HOH HOH . C 3 HOH A 86 786 786 HOH HOH . C 3 HOH A 87 787 787 HOH HOH . C 3 HOH A 88 788 788 HOH HOH . C 3 HOH A 89 789 789 HOH HOH . C 3 HOH A 90 790 790 HOH HOH . C 3 HOH A 91 791 791 HOH HOH . C 3 HOH A 92 792 792 HOH HOH . C 3 HOH A 93 793 793 HOH HOH . C 3 HOH A 94 794 794 HOH HOH . C 3 HOH A 95 795 795 HOH HOH . C 3 HOH A 96 796 796 HOH HOH . C 3 HOH A 97 797 797 HOH HOH . C 3 HOH A 98 798 798 HOH HOH . C 3 HOH A 99 799 799 HOH HOH . C 3 HOH A 100 800 800 HOH HOH . C 3 HOH A 101 801 801 HOH HOH . C 3 HOH A 102 802 802 HOH HOH . C 3 HOH A 103 803 803 HOH HOH . C 3 HOH A 104 804 804 HOH HOH . C 3 HOH A 105 805 805 HOH HOH . C 3 HOH A 106 806 806 HOH HOH . C 3 HOH A 107 807 807 HOH HOH . C 3 HOH A 108 808 808 HOH HOH . C 3 HOH A 109 809 809 HOH HOH . C 3 HOH A 110 810 810 HOH HOH . C 3 HOH A 111 811 811 HOH HOH . C 3 HOH A 112 812 812 HOH HOH . C 3 HOH A 113 813 813 HOH HOH . C 3 HOH A 114 814 814 HOH HOH . C 3 HOH A 115 815 815 HOH HOH . C 3 HOH A 116 816 816 HOH HOH . C 3 HOH A 117 817 817 HOH HOH . C 3 HOH A 118 818 818 HOH HOH . C 3 HOH A 119 819 819 HOH HOH . C 3 HOH A 120 820 820 HOH HOH . C 3 HOH A 121 821 821 HOH HOH . C 3 HOH A 122 822 822 HOH HOH . C 3 HOH A 123 823 823 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OAC NXL . . . B 2 11.004 38.567 43.552 1 65.57 ? OAC NXL 1330 A 1 HETATM 2 C CAN NXL . . . B 2 10.139 37.877 43.058 1 65.08 ? CAN NXL 1330 A 1 HETATM 3 N N NXL . . . B 2 9.056 37.541 43.728 1 77.95 ? N NXL 1330 A 1 HETATM 4 C CAJ NXL . . . B 2 7.848 36.939 43.193 1 76.63 ? CAJ NXL 1330 A 1 HETATM 5 C CA NXL . . . B 2 9.064 37.754 45.17 1 86.11 ? CA NXL 1330 A 1 HETATM 6 C C NXL . . . B 2 9.064 36.441 45.894 1 80.61 ? C NXL 1330 A 1 HETATM 7 O O NXL . . . B 2 8.398 36.32 46.903 1 80.49 ? O NXL 1330 A 1 HETATM 8 N NAA NXL . . . B 2 9.813 35.457 45.401 1 79.07 ? NAA NXL 1330 A 1 HETATM 9 C CB NXL . . . B 2 7.862 38.634 45.53 1 85.47 ? CB NXL 1330 A 1 HETATM 10 C CAH NXL . . . B 2 6.574 38.168 44.864 1 78.18 ? CAH NXL 1330 A 1 HETATM 11 C CAO NXL . . . B 2 6.771 37.992 43.372 1 80.88 ? CAO NXL 1330 A 1 HETATM 12 N NAK NXL . . . B 2 7.181 39.268 42.75 1 98.65 ? NAK NXL 1330 A 1 HETATM 13 O OAL NXL . . . B 2 6.313 40.25 43.095 1 114.96 ? OAL NXL 1330 A 1 HETATM 14 S SAR NXL . . . B 2 6.669 41.748 42.94 1 121.3 ? SAR NXL 1330 A 1 HETATM 15 O OAD NXL . . . B 2 7.377 42.277 44.129 1 120.26 ? OAD NXL 1330 A 1 HETATM 16 O OAE NXL . . . B 2 7.591 41.903 41.793 1 120.56 ? OAE NXL 1330 A 1 HETATM 17 O OAG NXL . . . B 2 5.41 42.513 42.726 1 121.49 ? OAG NXL 1330 A 1 # _model_server_stats.io_time_ms 24 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 17 #