data_6G9Q # _model_server_result.job_id HqVQzqDDBUsp15yySmXiCA _model_server_result.datetime_utc '2024-11-21 13:46:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6g9q # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":301}' # _entry.id 6G9Q # _exptl.entry_id 6G9Q _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 94.2 _cell.angle_gamma 90 _cell.entry_id 6G9Q _cell.length_a 256.383 _cell.length_b 46.622 _cell.length_c 90.059 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6G9Q _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 101 A CYS 101 1_555 A SG CYS 164 A CYS 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? disulf ? disulf2 A SG CYS 203 A CYS 203 1_555 A SG CYS 259 A CYS 259 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf3 B SG CYS 45 B CYS 25 1_555 B SG CYS 100 B CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? disulf ? disulf4 C SG CYS 30 G CYS 30 1_555 C SG CYS 97 G CYS 97 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf5 C SG CYS 141 G CYS 141 1_555 C SG CYS 191 G CYS 191 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf6 C SG CYS 166 G CYS 166 1_555 D SG CYS 168 H CYS 168 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf7 D SG CYS 21 H CYS 21 1_555 D SG CYS 89 H CYS 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf8 D SG CYS 142 H CYS 142 1_555 D SG CYS 203 H CYS 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 6G9Q _atom_sites.fract_transf_matrix[1][1] 0.0039 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000286 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021449 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011134 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 6 GOL A 1 301 1 GOL GOL . G 7 HOH A 1 401 6 HOH HOH . G 7 HOH A 2 402 31 HOH HOH . G 7 HOH A 3 403 24 HOH HOH . G 7 HOH A 4 404 86 HOH HOH . G 7 HOH A 5 405 142 HOH HOH . G 7 HOH A 6 406 60 HOH HOH . G 7 HOH A 7 407 63 HOH HOH . G 7 HOH A 8 408 18 HOH HOH . G 7 HOH A 9 409 26 HOH HOH . G 7 HOH A 10 410 119 HOH HOH . G 7 HOH A 11 411 28 HOH HOH . G 7 HOH A 12 412 39 HOH HOH . G 7 HOH A 13 413 106 HOH HOH . G 7 HOH A 14 414 130 HOH HOH . G 7 HOH A 15 415 138 HOH HOH . G 7 HOH A 16 416 71 HOH HOH . G 7 HOH A 17 417 20 HOH HOH . G 7 HOH A 18 418 164 HOH HOH . G 7 HOH A 19 419 111 HOH HOH . G 7 HOH A 20 420 145 HOH HOH . G 7 HOH A 21 421 35 HOH HOH . G 7 HOH A 22 422 102 HOH HOH . G 7 HOH A 23 423 53 HOH HOH . G 7 HOH A 24 424 14 HOH HOH . G 7 HOH A 25 425 58 HOH HOH . G 7 HOH A 26 426 4 HOH HOH . G 7 HOH A 27 427 11 HOH HOH . G 7 HOH A 28 428 88 HOH HOH . G 7 HOH A 29 429 87 HOH HOH . G 7 HOH A 30 430 123 HOH HOH . G 7 HOH A 31 431 144 HOH HOH . G 7 HOH A 32 432 3 HOH HOH . G 7 HOH A 33 433 2 HOH HOH . G 7 HOH A 34 434 12 HOH HOH . G 7 HOH A 35 435 113 HOH HOH . G 7 HOH A 36 436 42 HOH HOH . G 7 HOH A 37 437 52 HOH HOH . G 7 HOH A 38 438 160 HOH HOH . G 7 HOH A 39 439 155 HOH HOH . G 7 HOH A 40 440 51 HOH HOH . G 7 HOH A 41 441 128 HOH HOH . G 7 HOH A 42 442 157 HOH HOH . G 7 HOH A 43 443 13 HOH HOH . G 7 HOH A 44 444 135 HOH HOH . G 7 HOH A 45 445 72 HOH HOH . G 7 HOH A 46 446 92 HOH HOH . G 7 HOH A 47 447 115 HOH HOH . G 7 HOH A 48 448 107 HOH HOH . G 7 HOH A 49 449 161 HOH HOH . G 7 HOH A 50 450 108 HOH HOH . G 7 HOH A 51 451 30 HOH HOH . G 7 HOH A 52 452 163 HOH HOH . G 7 HOH A 53 453 49 HOH HOH . G 7 HOH A 54 454 122 HOH HOH . G 7 HOH A 55 455 112 HOH HOH . G 7 HOH A 56 456 17 HOH HOH . G 7 HOH A 57 457 7 HOH HOH . G 7 HOH A 58 458 62 HOH HOH . G 7 HOH A 59 459 134 HOH HOH . G 7 HOH A 60 460 93 HOH HOH . G 7 HOH A 61 461 156 HOH HOH . G 7 HOH A 62 462 25 HOH HOH . G 7 HOH A 63 463 81 HOH HOH . G 7 HOH A 64 464 168 HOH HOH . G 7 HOH A 65 465 126 HOH HOH . G 7 HOH A 66 466 153 HOH HOH . H 7 HOH B 1 101 80 HOH HOH . H 7 HOH B 2 102 56 HOH HOH . H 7 HOH B 3 103 151 HOH HOH . H 7 HOH B 4 104 77 HOH HOH . H 7 HOH B 5 105 98 HOH HOH . H 7 HOH B 6 106 82 HOH HOH . H 7 HOH B 7 107 149 HOH HOH . H 7 HOH B 8 108 124 HOH HOH . H 7 HOH B 9 109 117 HOH HOH . H 7 HOH B 10 110 64 HOH HOH . H 7 HOH B 11 111 159 HOH HOH . H 7 HOH B 12 112 101 HOH HOH . H 7 HOH B 13 113 120 HOH HOH . H 7 HOH B 14 114 174 HOH HOH . H 7 HOH B 15 115 1 HOH HOH . H 7 HOH B 16 116 16 HOH HOH . H 7 HOH B 17 117 8 HOH HOH . H 7 HOH B 18 118 78 HOH HOH . H 7 HOH B 19 119 167 HOH HOH . I 7 HOH G 1 301 94 HOH HOH . I 7 HOH G 2 302 75 HOH HOH . I 7 HOH G 3 303 21 HOH HOH . I 7 HOH G 4 304 67 HOH HOH . I 7 HOH G 5 305 110 HOH HOH . I 7 HOH G 6 306 83 HOH HOH . I 7 HOH G 7 307 103 HOH HOH . I 7 HOH G 8 308 29 HOH HOH . I 7 HOH G 9 309 76 HOH HOH . I 7 HOH G 10 310 150 HOH HOH . I 7 HOH G 11 311 65 HOH HOH . I 7 HOH G 12 312 129 HOH HOH . I 7 HOH G 13 313 23 HOH HOH . I 7 HOH G 14 314 32 HOH HOH . I 7 HOH G 15 315 109 HOH HOH . I 7 HOH G 16 316 19 HOH HOH . I 7 HOH G 17 317 152 HOH HOH . I 7 HOH G 18 318 38 HOH HOH . I 7 HOH G 19 319 146 HOH HOH . I 7 HOH G 20 320 121 HOH HOH . I 7 HOH G 21 321 166 HOH HOH . I 7 HOH G 22 322 10 HOH HOH . I 7 HOH G 23 323 132 HOH HOH . I 7 HOH G 24 324 171 HOH HOH . J 7 HOH H 1 301 141 HOH HOH . J 7 HOH H 2 302 137 HOH HOH . J 7 HOH H 3 303 162 HOH HOH . J 7 HOH H 4 304 154 HOH HOH . J 7 HOH H 5 305 90 HOH HOH . J 7 HOH H 6 306 85 HOH HOH . J 7 HOH H 7 307 36 HOH HOH . J 7 HOH H 8 308 79 HOH HOH . J 7 HOH H 9 309 158 HOH HOH . J 7 HOH H 10 310 54 HOH HOH . J 7 HOH H 11 311 22 HOH HOH . J 7 HOH H 12 312 147 HOH HOH . J 7 HOH H 13 313 61 HOH HOH . J 7 HOH H 14 314 125 HOH HOH . J 7 HOH H 15 315 104 HOH HOH . J 7 HOH H 16 316 74 HOH HOH . J 7 HOH H 17 317 99 HOH HOH . J 7 HOH H 18 318 43 HOH HOH . J 7 HOH H 19 319 46 HOH HOH . J 7 HOH H 20 320 15 HOH HOH . J 7 HOH H 21 321 84 HOH HOH . J 7 HOH H 22 322 140 HOH HOH . J 7 HOH H 23 323 47 HOH HOH . J 7 HOH H 24 324 118 HOH HOH . J 7 HOH H 25 325 131 HOH HOH . J 7 HOH H 26 326 44 HOH HOH . J 7 HOH H 27 327 96 HOH HOH . J 7 HOH H 28 328 70 HOH HOH . J 7 HOH H 29 329 33 HOH HOH . J 7 HOH H 30 330 68 HOH HOH . J 7 HOH H 31 331 59 HOH HOH . J 7 HOH H 32 332 55 HOH HOH . J 7 HOH H 33 333 133 HOH HOH . J 7 HOH H 34 334 45 HOH HOH . J 7 HOH H 35 335 41 HOH HOH . J 7 HOH H 36 336 37 HOH HOH . J 7 HOH H 37 337 73 HOH HOH . J 7 HOH H 38 338 116 HOH HOH . J 7 HOH H 39 339 57 HOH HOH . J 7 HOH H 40 340 175 HOH HOH . J 7 HOH H 41 341 127 HOH HOH . J 7 HOH H 42 342 89 HOH HOH . J 7 HOH H 43 343 40 HOH HOH . J 7 HOH H 44 344 114 HOH HOH . J 7 HOH H 45 345 143 HOH HOH . J 7 HOH H 46 346 27 HOH HOH . J 7 HOH H 47 347 97 HOH HOH . J 7 HOH H 48 348 148 HOH HOH . J 7 HOH H 49 349 176 HOH HOH . J 7 HOH H 50 350 9 HOH HOH . J 7 HOH H 51 351 69 HOH HOH . J 7 HOH H 52 352 34 HOH HOH . J 7 HOH H 53 353 105 HOH HOH . J 7 HOH H 54 354 139 HOH HOH . J 7 HOH H 55 355 48 HOH HOH . J 7 HOH H 56 356 172 HOH HOH . J 7 HOH H 57 357 50 HOH HOH . J 7 HOH H 58 358 165 HOH HOH . J 7 HOH H 59 359 95 HOH HOH . J 7 HOH H 60 360 170 HOH HOH . J 7 HOH H 61 361 136 HOH HOH . J 7 HOH H 62 362 169 HOH HOH . J 7 HOH H 63 363 173 HOH HOH . K 7 HOH P 1 101 91 HOH HOH . K 7 HOH P 2 102 66 HOH HOH . K 7 HOH P 3 103 5 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . F 6 2.413 -19.871 -17.622 1 36.32 ? C1 GOL 301 A 1 HETATM 2 O O1 GOL . . . F 6 1.218 -20.316 -18.267 1 45.49 ? O1 GOL 301 A 1 HETATM 3 C C2 GOL . . . F 6 2.539 -20.468 -16.231 1 39.13 ? C2 GOL 301 A 1 HETATM 4 O O2 GOL . . . F 6 1.615 -19.825 -15.356 1 42.31 ? O2 GOL 301 A 1 HETATM 5 C C3 GOL . . . F 6 3.956 -20.32 -15.686 1 37.27 ? C3 GOL 301 A 1 HETATM 6 O O3 GOL . . . F 6 3.982 -19.606 -14.448 1 40.65 ? O3 GOL 301 A 1 # _model_server_stats.io_time_ms 78 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 281 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 6 #