data_6G9X # _model_server_result.job_id lXV5dxM4CzQkR_kWVIgnTQ _model_server_result.datetime_utc '2024-11-27 16:59:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6g9x # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"T","auth_seq_id":506}' # _entry.id 6G9X # _exptl.entry_id 6G9X _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 154.186 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-sulfanylbenzoic acid' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6G9X _cell.length_a 106.765 _cell.length_b 200.539 _cell.length_c 64.561 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6G9X _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall 'P 2 2ab' _symmetry.space_group_name_H-M 'P 21 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,J,K,L,M,N,X 1 1 B,O,P,Q,R,S,T,U,V,W,Y 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 I N N ? 3 T N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 56 A CYS 56 1_555 D HG HG . A HG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.386 ? metalc ? metalc2 A SG CYS 57 A CYS 57 1_555 G HG HG . A HG 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.522 ? metalc ? metalc3 A O CYS 362 A CYS 362 1_555 C HG HG . A HG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.513 ? metalc ? metalc4 A O GLY 366 A GLY 366 1_555 G HG HG . A HG 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.022 ? metalc ? metalc5 A SG CYS 389 A CYS 389 1_555 E HG HG . A HG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.318 ? metalc ? metalc6 E HG HG . A HG 503 1_555 L O2 BNG . A BNG 510 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.958 ? metalc ? metalc7 L O3 BNG . A BNG 510 1_555 N HG HG . A HG 512 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.376 ? metalc ? metalc8 B SG CYS 56 B CYS 56 1_555 P HG HG . B HG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.599 ? metalc ? metalc9 B SG CYS 57 B CYS 57 1_555 R HG HG . B HG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.519 ? metalc ? metalc10 B O CYS 362 B CYS 362 1_555 O HG HG . B HG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.479 ? metalc ? metalc11 B O GLY 366 B GLY 366 1_555 R HG HG . B HG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.099 ? metalc ? metalc12 B SG CYS 389 B CYS 389 1_555 Q HG HG . B HG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.394 ? metalc ? metalc13 B SG CYS 394 B CYS 394 1_555 S HG HG . B HG 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.782 ? # _chem_comp.formula 'C7 H6 O2 S' _chem_comp.formula_weight 154.186 _chem_comp.id JKE _chem_comp.mon_nstd_flag . _chem_comp.name '2-sulfanylbenzoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag SD CE1 JKE sing 257 n n SD HSD JKE sing 258 n n CG CZ JKE sing 259 n n CG OD1 JKE doub 260 n n CG OD2 JKE sing 261 n n CZ CE1 JKE doub 262 n y CZ CE2 JKE sing 263 n y CD1 CE1 JKE sing 264 n y CD1 CG1 JKE doub 265 n y CD1 HD1 JKE sing 266 n n CD2 CE2 JKE doub 267 n y CD2 CG1 JKE sing 268 n y CD2 HD2 JKE sing 269 n n CE2 HE2 JKE sing 270 n n CG1 HG1 JKE sing 271 n n OD2 H6 JKE sing 272 n n # _atom_sites.entry_id 6G9X _atom_sites.fract_transf_matrix[1][1] 0.009366 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004987 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015489 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HG A 1 501 1 HG HG . D 2 HG A 1 502 3 HG HG . E 2 HG A 1 503 5 HG HG . F 2 HG A 1 504 7 HG HG . G 2 HG A 1 505 9 HG HG . H 2 HG A 1 506 12 HG HG . I 3 JKE A 1 507 1 JKE JKE . J 4 EPE A 1 508 1 EPE EPE . K 5 BNG A 1 509 3 BNG BNG . L 5 BNG A 1 510 4 BNG BNG . M 5 BNG A 1 511 6 BNG BNG . N 2 HG A 1 512 8 HG HG . O 2 HG B 1 501 2 HG HG . P 2 HG B 1 502 4 HG HG . Q 2 HG B 1 503 6 HG HG . R 2 HG B 1 504 10 HG HG . S 2 HG B 1 505 11 HG HG . T 3 JKE B 1 506 2 JKE JKE . U 5 BNG B 1 507 1 BNG BNG . V 5 BNG B 1 508 2 BNG BNG . W 5 BNG B 1 509 5 BNG BNG . X 6 HOH A 1 601 1 HOH HOH . Y 6 HOH B 1 601 2 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S SD JKE . . . T 3 135.658 26.377 62.62 1 105.15 ? SD JKE 506 B 1 HETATM 2 C CG JKE . . . T 3 135.97 23.038 62.885 1 75.1 ? CG JKE 506 B 1 HETATM 3 C CZ JKE . . . T 3 135.865 23.73 61.508 1 79.19 ? CZ JKE 506 B 1 HETATM 4 C CD1 JKE . . . T 3 135.624 25.602 59.959 1 83.94 ? CD1 JKE 506 B 1 HETATM 5 O OD1 JKE . . . T 3 136.197 21.8 62.926 1 72.69 ? OD1 JKE 506 B 1 HETATM 6 C CD2 JKE . . . T 3 135.777 23.37 59.117 1 82.66 ? CD2 JKE 506 B 1 HETATM 7 O OD2 JKE . . . T 3 135.803 23.64 63.98 1 74.81 ? OD2 JKE 506 B 1 HETATM 8 C CE1 JKE . . . T 3 135.719 25.122 61.279 1 96.6 ? CE1 JKE 506 B 1 HETATM 9 C CE2 JKE . . . T 3 135.893 22.877 60.414 1 70.21 ? CE2 JKE 506 B 1 HETATM 10 C CG1 JKE . . . T 3 135.646 24.736 58.877 1 75.02 ? CG1 JKE 506 B 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 16 _model_server_stats.element_count 10 #