data_6GA1
#
_model_server_result.job_id            e28QE_LpOir045tplWa1tg 
_model_server_result.datetime_utc      '2024-11-16 19:07:14' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6ga1 
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_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":312}' 
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_entry.id    6GA1 
#
_exptl.entry_id    6GA1 
_exptl.method      'X-RAY DIFFRACTION' 
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_entity.details                     ? 
_entity.formula_weight              128.255 
_entity.id                          10 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            nonane 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            6GA1 
_cell.length_a            61.7 
_cell.length_b            61.7 
_cell.length_c            109.2 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6GA1 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        173 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 63' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2,3 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_455 -y-1,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 -61.7 0 0 
3 'crystal symmetry operation' 3_445 -x+y-1,-x-1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 -30.85 -53.433767 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      10 
_struct_asym.id                             M 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_struct_conn.conn_type_id                   covale 
_struct_conn.details                        ? 
_struct_conn.id                             covale1 
_struct_conn.ptnr1_label_asym_id            A 
_struct_conn.ptnr1_label_atom_id            NZ 
_struct_conn.ptnr1_label_comp_id            LYS 
_struct_conn.ptnr1_label_seq_id             216 
_struct_conn.ptnr1_auth_asym_id             A 
_struct_conn.ptnr1_auth_comp_id             LYS 
_struct_conn.ptnr1_auth_seq_id              216 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            B 
_struct_conn.ptnr2_label_atom_id            C15 
_struct_conn.ptnr2_label_comp_id            RET 
_struct_conn.ptnr2_label_seq_id             . 
_struct_conn.ptnr2_auth_asym_id             A 
_struct_conn.ptnr2_auth_comp_id             RET 
_struct_conn.ptnr2_auth_seq_id              301 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                1.332 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C9 H20' 
_chem_comp.formula_weight    128.255 
_chem_comp.id                DD9 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              nonane 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C2 C1 DD9 sing 144 n n 
C1 H1 DD9 sing 145 n n 
C1 H1A DD9 sing 146 n n 
C1 H1B DD9 sing 147 n n 
C3 C2 DD9 sing 148 n n 
C2 H2 DD9 sing 149 n n 
C2 H2A DD9 sing 150 n n 
C4 C3 DD9 sing 151 n n 
C3 H3 DD9 sing 152 n n 
C3 H3A DD9 sing 153 n n 
C5 C4 DD9 sing 154 n n 
C4 H4 DD9 sing 155 n n 
C4 H4A DD9 sing 156 n n 
C6 C5 DD9 sing 157 n n 
C5 H5 DD9 sing 158 n n 
C5 H5A DD9 sing 159 n n 
C7 C6 DD9 sing 160 n n 
C6 H6 DD9 sing 161 n n 
C6 H6A DD9 sing 162 n n 
C8 C7 DD9 sing 163 n n 
C7 H7 DD9 sing 164 n n 
C7 H7A DD9 sing 165 n n 
C9 C8 DD9 sing 166 n n 
C8 H8 DD9 sing 167 n n 
C8 H8A DD9 sing 168 n n 
C9 H9 DD9 sing 169 n n 
C9 H9A DD9 sing 170 n n 
C9 H9B DD9 sing 171 n n 
#
_atom_sites.entry_id                     6GA1 
_atom_sites.fract_transf_matrix[1][1]    0.016207 
_atom_sites.fract_transf_matrix[1][2]    0.009357 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.018715 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009158 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 RET A 1 301 300 RET RET . 
C 3 L2P A 1 302 600 L2P L2P . 
D 4 TRD A 1 303 601 TRD TRD . 
E 5 D10 A 1 304 602 D10 D10 . 
F 6 HP6 A 1 305 603 HP6 HP6 . 
G 7 OCT A 1 306 604 OCT OCT . 
H 7 OCT A 1 307 605 OCT OCT . 
I 8 MYS A 1 308 606 MYS MYS . 
J 9 UND A 1 309 607 UND UND . 
K 3 L2P A 1 310 608 L2P L2P . 
L 3 L2P A 1 311 609 L2P L2P . 
M 10 DD9 A 1 312 611 DD9 DD9 . 
N 11 C14 A 1 313 612 C14 C14 . 
O 7 OCT A 1 314 613 OCT OCT . 
P 9 UND A 1 315 614 UND UND . 
Q 12 HOH A 1 401 36 HOH HOH . 
Q 12 HOH A 2 402 11 HOH HOH . 
Q 12 HOH A 3 403 18 HOH HOH . 
Q 12 HOH A 4 404 10 HOH HOH . 
Q 12 HOH A 5 405 16 HOH HOH . 
Q 12 HOH A 6 406 13 HOH HOH . 
Q 12 HOH A 7 407 3 HOH HOH . 
Q 12 HOH A 8 408 35 HOH HOH . 
Q 12 HOH A 9 409 17 HOH HOH . 
Q 12 HOH A 10 410 27 HOH HOH . 
Q 12 HOH A 11 411 1 HOH HOH . 
Q 12 HOH A 12 412 30 HOH HOH . 
Q 12 HOH A 13 413 20 HOH HOH . 
Q 12 HOH A 14 414 40 HOH HOH . 
Q 12 HOH A 15 415 33 HOH HOH . 
Q 12 HOH A 16 416 2 HOH HOH . 
Q 12 HOH A 17 417 43 HOH HOH . 
Q 12 HOH A 18 418 12 HOH HOH . 
Q 12 HOH A 19 419 14 HOH HOH . 
Q 12 HOH A 20 420 8 HOH HOH . 
Q 12 HOH A 21 421 22 HOH HOH . 
Q 12 HOH A 22 422 4 HOH HOH . 
Q 12 HOH A 23 423 9 HOH HOH . 
Q 12 HOH A 24 424 26 HOH HOH . 
Q 12 HOH A 25 425 6 HOH HOH . 
Q 12 HOH A 26 426 29 HOH HOH . 
Q 12 HOH A 27 427 5 HOH HOH . 
Q 12 HOH A 28 428 32 HOH HOH . 
Q 12 HOH A 29 429 19 HOH HOH . 
Q 12 HOH A 30 430 21 HOH HOH . 
Q 12 HOH A 31 431 31 HOH HOH . 
Q 12 HOH A 32 432 42 HOH HOH . 
Q 12 HOH A 33 433 7 HOH HOH . 
Q 12 HOH A 34 434 15 HOH HOH . 
Q 12 HOH A 35 435 34 HOH HOH . 
Q 12 HOH A 36 436 41 HOH HOH . 
Q 12 HOH A 37 437 38 HOH HOH . 
Q 12 HOH A 38 438 24 HOH HOH . 
Q 12 HOH A 39 439 28 HOH HOH . 
Q 12 HOH A 40 440 23 HOH HOH . 
Q 12 HOH A 41 441 39 HOH HOH . 
Q 12 HOH A 42 442 37 HOH HOH . 
Q 12 HOH A 43 443 25 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 DD9 . . . M 10 -0.507 -21.632 11.916 1 52.49 ? C1 DD9 312 A 1 
HETATM 2 C C2 DD9 . . . M 10 0.079 -21.434 10.534 1 52.41 ? C2 DD9 312 A 1 
HETATM 3 C C3 DD9 . . . M 10 -0.967 -20.829 9.626 1 45.67 ? C3 DD9 312 A 1 
HETATM 4 C C4 DD9 . . . M 10 -0.294 -20.038 8.524 1 50.39 ? C4 DD9 312 A 1 
HETATM 5 C C5 DD9 . . . M 10 -1.36 -19.302 7.739 1 47.58 ? C5 DD9 312 A 1 
HETATM 6 C C6 DD9 . . . M 10 -0.795 -18.011 7.189 1 46.35 ? C6 DD9 312 A 1 
HETATM 7 C C7 DD9 . . . M 10 -1.932 -17.09 6.799 1 47.48 ? C7 DD9 312 A 1 
HETATM 8 C C8 DD9 . . . M 10 -1.442 -16.092 5.772 1 50.47 ? C8 DD9 312 A 1 
HETATM 9 C C9 DD9 . . . M 10 -2.461 -14.985 5.609 1 44.13 ? C9 DD9 312 A 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           22 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           390 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           9 
#