data_6GA3
#
_model_server_result.job_id            7fsla1kaLcFKRvughFzuwA 
_model_server_result.datetime_utc      '2024-11-23 08:48:06' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6ga3 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":304}' 
#
_entry.id    6GA3 
#
_exptl.entry_id    6GA3 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              142.282 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            DECANE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            6GA3 
_cell.length_a            62.1 
_cell.length_b            62.1 
_cell.length_c            109.6 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6GA3 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        173 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 63' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2,3 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_455 -y-1,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 -62.1 0 0 
3 'crystal symmetry operation' 3_445 -x+y-1,-x-1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 -31.05 -53.780178 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      5 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A NZ LYS 216 A LYS 216 1_555 B C15 RET . A RET 301 1_555 ? A ? ? A ? ? ? ? ? ? ? 1.323 ? 
covale ? covale2 A NZ LYS 216 A LYS 216 1_555 B C15 RET . A RET 301 1_555 ? B ? ? B ? ? ? ? ? ? ? 1.313 ? 
#
_chem_comp.formula           'C10 H22' 
_chem_comp.formula_weight    142.282 
_chem_comp.id                D10 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              DECANE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 D10 sing 113 n n 
C1 H11 D10 sing 114 n n 
C1 H12 D10 sing 115 n n 
C1 H13 D10 sing 116 n n 
C2 C3 D10 sing 117 n n 
C2 H21 D10 sing 118 n n 
C2 H22 D10 sing 119 n n 
C3 C4 D10 sing 120 n n 
C3 H31 D10 sing 121 n n 
C3 H32 D10 sing 122 n n 
C4 C5 D10 sing 123 n n 
C4 H41 D10 sing 124 n n 
C4 H42 D10 sing 125 n n 
C5 C6 D10 sing 126 n n 
C5 H51 D10 sing 127 n n 
C5 H52 D10 sing 128 n n 
C6 C7 D10 sing 129 n n 
C6 H61 D10 sing 130 n n 
C6 H62 D10 sing 131 n n 
C7 C8 D10 sing 132 n n 
C7 H71 D10 sing 133 n n 
C7 H72 D10 sing 134 n n 
C8 C9 D10 sing 135 n n 
C8 H81 D10 sing 136 n n 
C8 H82 D10 sing 137 n n 
C9 C10 D10 sing 138 n n 
C9 H91 D10 sing 139 n n 
C9 H92 D10 sing 140 n n 
C10 H101 D10 sing 141 n n 
C10 H102 D10 sing 142 n n 
C10 H103 D10 sing 143 n n 
#
_atom_sites.entry_id                     6GA3 
_atom_sites.fract_transf_matrix[1][1]    0.016103 
_atom_sites.fract_transf_matrix[1][2]    0.009297 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.018594 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009124 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 RET A 1 301 300 RET RET . 
C 3 L2P A 1 302 600 L2P L2P . 
D 4 TRD A 1 303 601 TRD TRD . 
E 5 D10 A 1 304 602 D10 D10 . 
F 6 HP6 A 1 305 603 HP6 HP6 . 
G 7 OCT A 1 306 604 OCT OCT . 
H 7 OCT A 1 307 605 OCT OCT . 
I 8 MYS A 1 308 606 MYS MYS . 
J 9 UND A 1 309 607 UND UND . 
K 3 L2P A 1 310 608 L2P L2P . 
L 3 L2P A 1 311 609 L2P L2P . 
M 10 DD9 A 1 312 611 DD9 DD9 . 
N 11 C14 A 1 313 612 C14 C14 . 
O 7 OCT A 1 314 613 OCT OCT . 
P 9 UND A 1 315 614 UND UND . 
Q 12 HOH A 1 401 36 HOH HOH . 
Q 12 HOH A 2 402 18 HOH HOH . 
Q 12 HOH A 3 403 30 HOH HOH . 
Q 12 HOH A 4 404 3 HOH HOH . 
Q 12 HOH A 5 405 1 HOH HOH . 
Q 12 HOH A 6 406 27 HOH HOH . 
Q 12 HOH A 7 407 11 HOH HOH . 
Q 12 HOH A 8 408 10 HOH HOH . 
Q 12 HOH A 9 409 8 HOH HOH . 
Q 12 HOH A 10 410 31 HOH HOH . 
Q 12 HOH A 11 411 7 HOH HOH . 
Q 12 HOH A 12 412 16 HOH HOH . 
Q 12 HOH A 13 413 14 HOH HOH . 
Q 12 HOH A 14 414 15 HOH HOH . 
Q 12 HOH A 15 415 17 HOH HOH . 
Q 12 HOH A 16 416 22 HOH HOH . 
Q 12 HOH A 17 417 2 HOH HOH . 
Q 12 HOH A 18 418 13 HOH HOH . 
Q 12 HOH A 19 419 12 HOH HOH . 
Q 12 HOH A 20 420 26 HOH HOH . 
Q 12 HOH A 21 421 29 HOH HOH . 
Q 12 HOH A 22 422 20 HOH HOH . 
Q 12 HOH A 23 423 6 HOH HOH . 
Q 12 HOH A 24 424 4 HOH HOH . 
Q 12 HOH A 25 425 21 HOH HOH . 
Q 12 HOH A 26 426 9 HOH HOH . 
Q 12 HOH A 27 427 19 HOH HOH . 
Q 12 HOH A 28 428 24 HOH HOH . 
Q 12 HOH A 29 429 35 HOH HOH . 
Q 12 HOH A 30 430 5 HOH HOH . 
Q 12 HOH A 31 431 28 HOH HOH . 
Q 12 HOH A 32 432 33 HOH HOH . 
Q 12 HOH A 33 433 23 HOH HOH . 
Q 12 HOH A 34 434 38 HOH HOH . 
Q 12 HOH A 35 435 34 HOH HOH . 
Q 12 HOH A 36 436 37 HOH HOH . 
Q 12 HOH A 37 437 32 HOH HOH . 
Q 12 HOH A 38 438 25 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 D10 . . . E 5 -7.61 -34.712 -2.564 1 61.34 ? C1 D10 304 A 1 
HETATM 2 C C2 D10 . . . E 5 -7.239 -33.877 -3.773 1 51.62 ? C2 D10 304 A 1 
HETATM 3 C C3 D10 . . . E 5 -8.517 -33.436 -4.449 1 46.07 ? C3 D10 304 A 1 
HETATM 4 C C4 D10 . . . E 5 -8.185 -32.574 -5.644 1 46.8 ? C4 D10 304 A 1 
HETATM 5 C C5 D10 . . . E 5 -9.214 -32.872 -6.703 1 55.91 ? C5 D10 304 A 1 
HETATM 6 C C6 D10 . . . E 5 -9.133 -31.846 -7.807 1 42.83 ? C6 D10 304 A 1 
HETATM 7 C C7 D10 . . . E 5 -7.721 -31.711 -8.324 1 50.81 ? C7 D10 304 A 1 
HETATM 8 C C8 D10 . . . E 5 -7.782 -31.397 -9.806 1 46.26 ? C8 D10 304 A 1 
HETATM 9 C C9 D10 . . . E 5 -7.285 -32.6 -10.577 1 58.59 ? C9 D10 304 A 1 
HETATM 10 C C10 D10 . . . E 5 -7.172 -32.251 -12.045 1 48.22 ? C10 D10 304 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           380 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           10 
#