data_6GA6
#
_model_server_result.job_id            VY72c7f1Nbz9eGkwyV23kw 
_model_server_result.datetime_utc      '2024-11-13 04:27:07' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6ga6 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":303}' 
#
_entry.id    6GA6 
#
_exptl.entry_id    6GA6 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              184.361 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            TRIDECANE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            6GA6 
_cell.length_a            61.7 
_cell.length_b            61.7 
_cell.length_c            109.4 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6GA6 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        173 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 63' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2,3 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_455 -y-1,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 -61.7 0 0 
3 'crystal symmetry operation' 3_445 -x+y-1,-x-1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 -30.85 -53.433767 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A NZ LYS 216 A LYS 216 1_555 B C15 RET . A RET 301 1_555 ? A ? ? A ? ? ? ? ? ? ? 1.332 ? 
covale ? covale2 A NZ LYS 216 A LYS 216 1_555 B C15 RET . A RET 301 1_555 ? B ? ? B ? ? ? ? ? ? ? 1.314 ? 
#
_chem_comp.formula           'C13 H28' 
_chem_comp.formula_weight    184.361 
_chem_comp.id                TRD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              TRIDECANE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'LIPID FRAGMENT' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 TRD sing 649 n n 
C1 H11 TRD sing 650 n n 
C1 H12 TRD sing 651 n n 
C1 H13 TRD sing 652 n n 
C2 C3 TRD sing 653 n n 
C2 H21 TRD sing 654 n n 
C2 H22 TRD sing 655 n n 
C3 C4 TRD sing 656 n n 
C3 H31 TRD sing 657 n n 
C3 H32 TRD sing 658 n n 
C4 C5 TRD sing 659 n n 
C4 H41 TRD sing 660 n n 
C4 H42 TRD sing 661 n n 
C5 C6 TRD sing 662 n n 
C5 H51 TRD sing 663 n n 
C5 H52 TRD sing 664 n n 
C6 C7 TRD sing 665 n n 
C6 H61 TRD sing 666 n n 
C6 H62 TRD sing 667 n n 
C7 C8 TRD sing 668 n n 
C7 H71 TRD sing 669 n n 
C7 H72 TRD sing 670 n n 
C8 C9 TRD sing 671 n n 
C8 H81 TRD sing 672 n n 
C8 H82 TRD sing 673 n n 
C9 C10 TRD sing 674 n n 
C9 H91 TRD sing 675 n n 
C9 H92 TRD sing 676 n n 
C10 C11 TRD sing 677 n n 
C10 H101 TRD sing 678 n n 
C10 H102 TRD sing 679 n n 
C11 C12 TRD sing 680 n n 
C11 H111 TRD sing 681 n n 
C11 H112 TRD sing 682 n n 
C12 C13 TRD sing 683 n n 
C12 H121 TRD sing 684 n n 
C12 H122 TRD sing 685 n n 
C13 H131 TRD sing 686 n n 
C13 H132 TRD sing 687 n n 
C13 H133 TRD sing 688 n n 
#
_atom_sites.entry_id                     6GA6 
_atom_sites.fract_transf_matrix[1][1]    0.016207 
_atom_sites.fract_transf_matrix[1][2]    0.009357 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.018715 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009141 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 RET A 1 301 300 RET RET . 
C 3 L2P A 1 302 600 L2P L2P . 
D 4 TRD A 1 303 601 TRD TRD . 
E 5 D10 A 1 304 602 D10 D10 . 
F 6 HP6 A 1 305 603 HP6 HP6 . 
G 7 OCT A 1 306 604 OCT OCT . 
H 7 OCT A 1 307 605 OCT OCT . 
I 8 MYS A 1 308 606 MYS MYS . 
J 9 UND A 1 309 607 UND UND . 
K 3 L2P A 1 310 608 L2P L2P . 
L 3 L2P A 1 311 609 L2P L2P . 
M 10 DD9 A 1 312 611 DD9 DD9 . 
N 11 C14 A 1 313 612 C14 C14 . 
O 7 OCT A 1 314 613 OCT OCT . 
P 9 UND A 1 315 614 UND UND . 
Q 12 HOH A 1 401 636 HOH HOH . 
Q 12 HOH A 2 402 611 HOH HOH . 
Q 12 HOH A 3 403 618 HOH HOH . 
Q 12 HOH A 4 404 610 HOH HOH . 
Q 12 HOH A 5 405 616 HOH HOH . 
Q 12 HOH A 6 406 402 HOH HOH . 
Q 12 HOH A 7 407 613 HOH HOH . 
Q 12 HOH A 8 408 635 HOH HOH . 
Q 12 HOH A 9 409 617 HOH HOH . 
Q 12 HOH A 10 410 627 HOH HOH . 
Q 12 HOH A 11 411 406 HOH HOH . 
Q 12 HOH A 12 412 630 HOH HOH . 
Q 12 HOH A 13 413 620 HOH HOH . 
Q 12 HOH A 14 414 640 HOH HOH . 
Q 12 HOH A 15 415 633 HOH HOH . 
Q 12 HOH A 16 416 401 HOH HOH . 
Q 12 HOH A 17 417 643 HOH HOH . 
Q 12 HOH A 18 418 612 HOH HOH . 
Q 12 HOH A 19 419 614 HOH HOH . 
Q 12 HOH A 20 420 403 HOH HOH . 
Q 12 HOH A 21 421 622 HOH HOH . 
Q 12 HOH A 22 422 407 HOH HOH . 
Q 12 HOH A 23 423 609 HOH HOH . 
Q 12 HOH A 24 424 626 HOH HOH . 
Q 12 HOH A 25 425 606 HOH HOH . 
Q 12 HOH A 26 426 629 HOH HOH . 
Q 12 HOH A 27 427 501 HOH HOH . 
Q 12 HOH A 28 428 632 HOH HOH . 
Q 12 HOH A 29 429 619 HOH HOH . 
Q 12 HOH A 30 430 621 HOH HOH . 
Q 12 HOH A 31 431 631 HOH HOH . 
Q 12 HOH A 32 432 642 HOH HOH . 
Q 12 HOH A 33 433 404 HOH HOH . 
Q 12 HOH A 34 434 615 HOH HOH . 
Q 12 HOH A 35 435 634 HOH HOH . 
Q 12 HOH A 36 436 641 HOH HOH . 
Q 12 HOH A 37 437 638 HOH HOH . 
Q 12 HOH A 38 438 624 HOH HOH . 
Q 12 HOH A 39 439 628 HOH HOH . 
Q 12 HOH A 40 440 623 HOH HOH . 
Q 12 HOH A 41 441 639 HOH HOH . 
Q 12 HOH A 42 442 637 HOH HOH . 
Q 12 HOH A 43 443 625 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 TRD . . . D 4 -12.91 3.327 6.702 1 49.15 ? C1 TRD 303 A 1 
HETATM 2 C C2 TRD . . . D 4 -12.705 2.165 7.65 1 45.07 ? C2 TRD 303 A 1 
HETATM 3 C C3 TRD . . . D 4 -11.265 2.145 8.12 1 52.44 ? C3 TRD 303 A 1 
HETATM 4 C C4 TRD . . . D 4 -10.698 0.747 7.989 1 45 ? C4 TRD 303 A 1 
HETATM 5 C C5 TRD . . . D 4 -10.909 0.251 6.574 1 46.55 ? C5 TRD 303 A 1 
HETATM 6 C C6 TRD . . . D 4 -9.632 0.375 5.769 1 50.62 ? C6 TRD 303 A 1 
HETATM 7 C C7 TRD . . . D 4 -9.986 0.76 4.348 1 49.52 ? C7 TRD 303 A 1 
HETATM 8 C C8 TRD . . . D 4 -9.03 0.095 3.381 1 47.88 ? C8 TRD 303 A 1 
HETATM 9 C C9 TRD . . . D 4 -9.286 0.618 1.983 1 49.05 ? C9 TRD 303 A 1 
HETATM 10 C C10 TRD . . . D 4 -9.46 -0.548 1.032 1 45.7 ? C10 TRD 303 A 1 
HETATM 11 C C11 TRD . . . D 4 -9.32 -0.063 -0.393 1 44.01 ? C11 TRD 303 A 1 
HETATM 12 C C12 TRD . . . D 4 -10.427 -0.644 -1.245 1 38.78 ? C12 TRD 303 A 1 
HETATM 13 C C13 TRD . . . D 4 -10.27 -0.168 -2.676 1 36.66 ? C13 TRD 303 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           24 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           255 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           13 
#