data_6GAF # _model_server_result.job_id c4iI8ZmhfNygTm1G-KwiCQ _model_server_result.datetime_utc '2024-11-23 12:08:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6gaf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":313}' # _entry.id 6GAF # _exptl.entry_id 6GAF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 198.388 _entity.id 11 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description TETRADECANE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6GAF _cell.length_a 62.1 _cell.length_b 62.1 _cell.length_c 110.5 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6GAF _symmetry.cell_setting ? _symmetry.Int_Tables_number 173 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_455 -y-1,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 -62.1 0 0 3 'crystal symmetry operation' 3_445 -x+y-1,-x-1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 -31.05 -53.780178 0 # _struct_asym.details ? _struct_asym.entity_id 11 _struct_asym.id N _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NZ LYS 216 A LYS 216 1_555 B C15 RET . A RET 301 1_555 ? A ? ? A ? ? ? ? ? ? ? 1.343 ? covale ? covale2 A NZ LYS 216 A LYS 216 1_555 B C15 RET . A RET 301 1_555 ? B ? ? B ? ? ? ? ? ? ? 1.307 ? # _chem_comp.formula 'C14 H30' _chem_comp.formula_weight 198.388 _chem_comp.id C14 _chem_comp.mon_nstd_flag . _chem_comp.name TETRADECANE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C01 C02 C14 sing 70 n n C01 H011 C14 sing 71 n n C01 H012 C14 sing 72 n n C01 H013 C14 sing 73 n n C02 C03 C14 sing 74 n n C02 H021 C14 sing 75 n n C02 H022 C14 sing 76 n n C03 C04 C14 sing 77 n n C03 H031 C14 sing 78 n n C03 H032 C14 sing 79 n n C04 C05 C14 sing 80 n n C04 H041 C14 sing 81 n n C04 H042 C14 sing 82 n n C05 C06 C14 sing 83 n n C05 H051 C14 sing 84 n n C05 H052 C14 sing 85 n n C06 C07 C14 sing 86 n n C06 H061 C14 sing 87 n n C06 H062 C14 sing 88 n n C07 C08 C14 sing 89 n n C07 H071 C14 sing 90 n n C07 H072 C14 sing 91 n n C08 C09 C14 sing 92 n n C08 H081 C14 sing 93 n n C08 H082 C14 sing 94 n n C09 C10 C14 sing 95 n n C09 H091 C14 sing 96 n n C09 H092 C14 sing 97 n n C10 C11 C14 sing 98 n n C10 H101 C14 sing 99 n n C10 H102 C14 sing 100 n n C11 C12 C14 sing 101 n n C11 H111 C14 sing 102 n n C11 H112 C14 sing 103 n n C12 C13 C14 sing 104 n n C12 H121 C14 sing 105 n n C12 H122 C14 sing 106 n n C13 C14 C14 sing 107 n n C13 H131 C14 sing 108 n n C13 H132 C14 sing 109 n n C14 H141 C14 sing 110 n n C14 H142 C14 sing 111 n n C14 H143 C14 sing 112 n n # _atom_sites.entry_id 6GAF _atom_sites.fract_transf_matrix[1][1] 0.016103 _atom_sites.fract_transf_matrix[1][2] 0.009297 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018594 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00905 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 RET A 1 301 300 RET RET . C 3 L2P A 1 302 600 L2P L2P . D 4 TRD A 1 303 601 TRD TRD . E 5 D10 A 1 304 602 D10 D10 . F 6 HP6 A 1 305 603 HP6 HP6 . G 7 OCT A 1 306 604 OCT OCT . H 7 OCT A 1 307 605 OCT OCT . I 8 MYS A 1 308 606 MYS MYS . J 9 UND A 1 309 607 UND UND . K 3 L2P A 1 310 608 L2P L2P . L 3 L2P A 1 311 609 L2P L2P . M 10 DD9 A 1 312 611 DD9 DD9 . N 11 C14 A 1 313 612 C14 C14 . O 7 OCT A 1 314 613 OCT OCT . P 9 UND A 1 315 614 UND UND . Q 12 HOH A 1 401 636 HOH HOH . Q 12 HOH A 2 402 611 HOH HOH . Q 12 HOH A 3 403 627 HOH HOH . Q 12 HOH A 4 404 618 HOH HOH . Q 12 HOH A 5 405 613 HOH HOH . Q 12 HOH A 6 406 616 HOH HOH . Q 12 HOH A 7 407 610 HOH HOH . Q 12 HOH A 8 408 402 HOH HOH . Q 12 HOH A 9 409 631 HOH HOH . Q 12 HOH A 10 410 617 HOH HOH . Q 12 HOH A 11 411 406 HOH HOH . Q 12 HOH A 12 412 403 HOH HOH . Q 12 HOH A 13 413 401 HOH HOH . Q 12 HOH A 14 414 620 HOH HOH . Q 12 HOH A 15 415 630 HOH HOH . Q 12 HOH A 16 416 633 HOH HOH . Q 12 HOH A 17 417 614 HOH HOH . Q 12 HOH A 18 418 609 HOH HOH . Q 12 HOH A 19 419 606 HOH HOH . Q 12 HOH A 20 420 635 HOH HOH . Q 12 HOH A 21 421 407 HOH HOH . Q 12 HOH A 22 422 612 HOH HOH . Q 12 HOH A 23 423 626 HOH HOH . Q 12 HOH A 24 424 404 HOH HOH . Q 12 HOH A 25 425 501 HOH HOH . Q 12 HOH A 26 426 619 HOH HOH . Q 12 HOH A 27 427 622 HOH HOH . Q 12 HOH A 28 428 615 HOH HOH . Q 12 HOH A 29 429 628 HOH HOH . Q 12 HOH A 30 430 624 HOH HOH . Q 12 HOH A 31 431 621 HOH HOH . Q 12 HOH A 32 432 629 HOH HOH . Q 12 HOH A 33 433 623 HOH HOH . Q 12 HOH A 34 434 634 HOH HOH . Q 12 HOH A 35 435 638 HOH HOH . Q 12 HOH A 36 436 637 HOH HOH . Q 12 HOH A 37 437 632 HOH HOH . Q 12 HOH A 38 438 625 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 C14 . . . N 11 -28.399 -14.095 13.533 1 54.09 ? C01 C14 313 A 1 HETATM 2 C C02 C14 . . . N 11 -27.557 -14.152 12.276 1 49.27 ? C02 C14 313 A 1 HETATM 3 C C03 C14 . . . N 11 -26.772 -15.444 12.26 1 51.47 ? C03 C14 313 A 1 HETATM 4 C C04 C14 . . . N 11 -25.783 -15.438 11.113 1 50.37 ? C04 C14 313 A 1 HETATM 5 C C05 C14 . . . N 11 -26.347 -16.22 9.947 1 49.01 ? C05 C14 313 A 1 HETATM 6 C C06 C14 . . . N 11 -25.227 -16.618 9.011 1 48.4 ? C06 C14 313 A 1 HETATM 7 C C07 C14 . . . N 11 -25.776 -16.757 7.609 1 48.64 ? C07 C14 313 A 1 HETATM 8 C C08 C14 . . . N 11 -24.739 -17.374 6.697 1 43.57 ? C08 C14 313 A 1 HETATM 9 C C09 C14 . . . N 11 -25.422 -17.911 5.456 1 45.39 ? C09 C14 313 A 1 HETATM 10 C C10 C14 . . . N 11 -25.525 -16.835 4.397 1 43.64 ? C10 C14 313 A 1 HETATM 11 C C11 C14 . . . N 11 -26.935 -16.279 4.356 1 47.15 ? C11 C14 313 A 1 HETATM 12 C C12 C14 . . . N 11 -26.999 -15.116 3.388 1 43.35 ? C12 C14 313 A 1 HETATM 13 C C13 C14 . . . N 11 -27.145 -15.649 1.978 1 44.89 ? C13 C14 313 A 1 HETATM 14 C C14 C14 . . . N 11 -27.728 -14.559 1.107 1 47.02 ? C14 C14 313 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 292 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 14 #