data_6GAF
#
_model_server_result.job_id            kp2MrYYg0Bp4b5Jkajg2Bw 
_model_server_result.datetime_utc      '2024-11-27 04:19:41' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6gaf 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"P","auth_seq_id":315}' 
#
_entry.id    6GAF 
#
_exptl.entry_id    6GAF 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              156.308 
_entity.id                          9 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            UNDECANE 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            6GAF 
_cell.length_a            62.1 
_cell.length_b            62.1 
_cell.length_c            110.5 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6GAF 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        173 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 63' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2,3 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_455 -y-1,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 -62.1 0 0 
3 'crystal symmetry operation' 3_445 -x+y-1,-x-1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 -31.05 -53.780178 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 9 J N N 
? 9 P N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A NZ LYS 216 A LYS 216 1_555 B C15 RET . A RET 301 1_555 ? A ? ? A ? ? ? ? ? ? ? 1.343 ? 
covale ? covale2 A NZ LYS 216 A LYS 216 1_555 B C15 RET . A RET 301 1_555 ? B ? ? B ? ? ? ? ? ? ? 1.307 ? 
#
_chem_comp.formula           'C11 H24' 
_chem_comp.formula_weight    156.308 
_chem_comp.id                UND 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              UNDECANE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'LIPID FRAGMENT' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 UND sing 741 n n 
C1 H11 UND sing 742 n n 
C1 H12 UND sing 743 n n 
C1 H13 UND sing 744 n n 
C2 C3 UND sing 745 n n 
C2 H21 UND sing 746 n n 
C2 H22 UND sing 747 n n 
C3 C4 UND sing 748 n n 
C3 H31 UND sing 749 n n 
C3 H32 UND sing 750 n n 
C4 C5 UND sing 751 n n 
C4 H41 UND sing 752 n n 
C4 H42 UND sing 753 n n 
C5 C6 UND sing 754 n n 
C5 H51 UND sing 755 n n 
C5 H52 UND sing 756 n n 
C6 C7 UND sing 757 n n 
C6 H61 UND sing 758 n n 
C6 H62 UND sing 759 n n 
C7 C8 UND sing 760 n n 
C7 H71 UND sing 761 n n 
C7 H72 UND sing 762 n n 
C8 C9 UND sing 763 n n 
C8 H81 UND sing 764 n n 
C8 H82 UND sing 765 n n 
C9 C10 UND sing 766 n n 
C9 H91 UND sing 767 n n 
C9 H92 UND sing 768 n n 
C10 C11 UND sing 769 n n 
C10 H101 UND sing 770 n n 
C10 H102 UND sing 771 n n 
C11 H111 UND sing 772 n n 
C11 H112 UND sing 773 n n 
C11 H113 UND sing 774 n n 
#
_atom_sites.entry_id                     6GAF 
_atom_sites.fract_transf_matrix[1][1]    0.016103 
_atom_sites.fract_transf_matrix[1][2]    0.009297 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.018594 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00905 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 RET A 1 301 300 RET RET . 
C 3 L2P A 1 302 600 L2P L2P . 
D 4 TRD A 1 303 601 TRD TRD . 
E 5 D10 A 1 304 602 D10 D10 . 
F 6 HP6 A 1 305 603 HP6 HP6 . 
G 7 OCT A 1 306 604 OCT OCT . 
H 7 OCT A 1 307 605 OCT OCT . 
I 8 MYS A 1 308 606 MYS MYS . 
J 9 UND A 1 309 607 UND UND . 
K 3 L2P A 1 310 608 L2P L2P . 
L 3 L2P A 1 311 609 L2P L2P . 
M 10 DD9 A 1 312 611 DD9 DD9 . 
N 11 C14 A 1 313 612 C14 C14 . 
O 7 OCT A 1 314 613 OCT OCT . 
P 9 UND A 1 315 614 UND UND . 
Q 12 HOH A 1 401 636 HOH HOH . 
Q 12 HOH A 2 402 611 HOH HOH . 
Q 12 HOH A 3 403 627 HOH HOH . 
Q 12 HOH A 4 404 618 HOH HOH . 
Q 12 HOH A 5 405 613 HOH HOH . 
Q 12 HOH A 6 406 616 HOH HOH . 
Q 12 HOH A 7 407 610 HOH HOH . 
Q 12 HOH A 8 408 402 HOH HOH . 
Q 12 HOH A 9 409 631 HOH HOH . 
Q 12 HOH A 10 410 617 HOH HOH . 
Q 12 HOH A 11 411 406 HOH HOH . 
Q 12 HOH A 12 412 403 HOH HOH . 
Q 12 HOH A 13 413 401 HOH HOH . 
Q 12 HOH A 14 414 620 HOH HOH . 
Q 12 HOH A 15 415 630 HOH HOH . 
Q 12 HOH A 16 416 633 HOH HOH . 
Q 12 HOH A 17 417 614 HOH HOH . 
Q 12 HOH A 18 418 609 HOH HOH . 
Q 12 HOH A 19 419 606 HOH HOH . 
Q 12 HOH A 20 420 635 HOH HOH . 
Q 12 HOH A 21 421 407 HOH HOH . 
Q 12 HOH A 22 422 612 HOH HOH . 
Q 12 HOH A 23 423 626 HOH HOH . 
Q 12 HOH A 24 424 404 HOH HOH . 
Q 12 HOH A 25 425 501 HOH HOH . 
Q 12 HOH A 26 426 619 HOH HOH . 
Q 12 HOH A 27 427 622 HOH HOH . 
Q 12 HOH A 28 428 615 HOH HOH . 
Q 12 HOH A 29 429 628 HOH HOH . 
Q 12 HOH A 30 430 624 HOH HOH . 
Q 12 HOH A 31 431 621 HOH HOH . 
Q 12 HOH A 32 432 629 HOH HOH . 
Q 12 HOH A 33 433 623 HOH HOH . 
Q 12 HOH A 34 434 634 HOH HOH . 
Q 12 HOH A 35 435 638 HOH HOH . 
Q 12 HOH A 36 436 637 HOH HOH . 
Q 12 HOH A 37 437 632 HOH HOH . 
Q 12 HOH A 38 438 625 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 UND . . . P 9 -22.396 2.542 12.299 1 52 ? C1 UND 315 A 1 
HETATM 2 C C2 UND . . . P 9 -21.779 3.876 11.936 1 53.33 ? C2 UND 315 A 1 
HETATM 3 C C3 UND . . . P 9 -21.7 4.012 10.43 1 54.82 ? C3 UND 315 A 1 
HETATM 4 C C4 UND . . . P 9 -20.959 5.288 10.089 1 56.16 ? C4 UND 315 A 1 
HETATM 5 C C5 UND . . . P 9 -20.701 5.363 8.599 1 54.87 ? C5 UND 315 A 1 
HETATM 6 C C6 UND . . . P 9 -19.561 4.435 8.223 1 55.38 ? C6 UND 315 A 1 
HETATM 7 C C7 UND . . . P 9 -18.808 4.99 7.029 1 55.88 ? C7 UND 315 A 1 
HETATM 8 C C8 UND . . . P 9 -18.954 4.068 5.834 1 51.61 ? C8 UND 315 A 1 
HETATM 9 C C9 UND . . . P 9 -20.384 4.093 5.324 1 52.16 ? C9 UND 315 A 1 
HETATM 10 C C10 UND . . . P 9 -20.406 3.813 3.837 1 46.38 ? C10 UND 315 A 1 
HETATM 11 C C11 UND . . . P 9 -21.826 3.947 3.322 1 46.14 ? C11 UND 315 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           20 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           278 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           11 
#