data_6GAI # _model_server_result.job_id yTQhR3q4Daa-6HsYqthi5A _model_server_result.datetime_utc '2024-11-04 22:51:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6gai # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":302}' # _entry.id 6GAI # _exptl.entry_id 6GAI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 653.157 _entity.id 3 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description 2,3-DI-PHYTANYL-GLYCEROL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6GAI _cell.length_a 62.1 _cell.length_b 62.1 _cell.length_c 110.5 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6GAI _symmetry.cell_setting ? _symmetry.Int_Tables_number 173 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_455 -y-1,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 -62.1 0 0 3 'crystal symmetry operation' 3_445 -x+y-1,-x-1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 -31.05 -53.780178 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 K N N ? 3 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NZ LYS 216 A LYS 216 1_555 B C15 RET . A RET 301 1_555 ? A ? ? A ? ? ? ? ? ? ? 1.343 ? covale ? covale2 A NZ LYS 216 A LYS 216 1_555 B C15 RET . A RET 301 1_555 ? B ? ? B ? ? ? ? ? ? ? 1.304 ? # _chem_comp.formula 'C43 H88 O3' _chem_comp.formula_weight 653.157 _chem_comp.id L2P _chem_comp.mon_nstd_flag . _chem_comp.name 2,3-DI-PHYTANYL-GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1,2-DI-1-(3,7,11,15-TETRAMETHYL-HEXADECANE)-SN-GLYCEROL # _atom_sites.entry_id 6GAI _atom_sites.fract_transf_matrix[1][1] 0.016103 _atom_sites.fract_transf_matrix[1][2] 0.009297 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018594 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00905 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 RET A 1 301 300 RET RET . C 3 L2P A 1 302 600 L2P L2P . D 4 TRD A 1 303 601 TRD TRD . E 5 D10 A 1 304 602 D10 D10 . F 6 HP6 A 1 305 603 HP6 HP6 . G 7 OCT A 1 306 604 OCT OCT . H 7 OCT A 1 307 605 OCT OCT . I 8 MYS A 1 308 606 MYS MYS . J 9 UND A 1 309 607 UND UND . K 3 L2P A 1 310 608 L2P L2P . L 3 L2P A 1 311 609 L2P L2P . M 10 DD9 A 1 312 611 DD9 DD9 . N 11 C14 A 1 313 612 C14 C14 . O 7 OCT A 1 314 613 OCT OCT . P 9 UND A 1 315 614 UND UND . Q 12 HOH A 1 401 636 HOH HOH . Q 12 HOH A 2 402 611 HOH HOH . Q 12 HOH A 3 403 627 HOH HOH . Q 12 HOH A 4 404 618 HOH HOH . Q 12 HOH A 5 405 613 HOH HOH . Q 12 HOH A 6 406 616 HOH HOH . Q 12 HOH A 7 407 610 HOH HOH . Q 12 HOH A 8 408 402 HOH HOH . Q 12 HOH A 9 409 631 HOH HOH . Q 12 HOH A 10 410 617 HOH HOH . Q 12 HOH A 11 411 406 HOH HOH . Q 12 HOH A 12 412 403 HOH HOH . Q 12 HOH A 13 413 401 HOH HOH . Q 12 HOH A 14 414 620 HOH HOH . Q 12 HOH A 15 415 630 HOH HOH . Q 12 HOH A 16 416 633 HOH HOH . Q 12 HOH A 17 417 614 HOH HOH . Q 12 HOH A 18 418 609 HOH HOH . Q 12 HOH A 19 419 606 HOH HOH . Q 12 HOH A 20 420 635 HOH HOH . Q 12 HOH A 21 421 407 HOH HOH . Q 12 HOH A 22 422 612 HOH HOH . Q 12 HOH A 23 423 626 HOH HOH . Q 12 HOH A 24 424 404 HOH HOH . Q 12 HOH A 25 425 501 HOH HOH . Q 12 HOH A 26 426 619 HOH HOH . Q 12 HOH A 27 427 622 HOH HOH . Q 12 HOH A 28 428 615 HOH HOH . Q 12 HOH A 29 429 628 HOH HOH . Q 12 HOH A 30 430 624 HOH HOH . Q 12 HOH A 31 431 621 HOH HOH . Q 12 HOH A 32 432 629 HOH HOH . Q 12 HOH A 33 433 623 HOH HOH . Q 12 HOH A 34 434 634 HOH HOH . Q 12 HOH A 35 435 638 HOH HOH . Q 12 HOH A 36 436 637 HOH HOH . Q 12 HOH A 37 437 632 HOH HOH . Q 12 HOH A 38 438 625 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 L2P . . . C 3 -26.803 -0.8 13.792 1 41.69 ? C1 L2P 302 A 1 HETATM 2 O O1 L2P . . . C 3 -26.335 -1.973 14.492 1 46.24 ? O1 L2P 302 A 1 HETATM 3 C C2 L2P . . . C 3 -26.295 -0.848 12.349 1 41.54 ? C2 L2P 302 A 1 HETATM 4 O O2 L2P . . . C 3 -27.4 -0.868 11.44 1 44.58 ? O2 L2P 302 A 1 HETATM 5 C C11 L2P . . . C 3 -24.898 -2.031 14.637 1 43.79 ? C11 L2P 302 A 1 HETATM 6 C C41 L2P . . . C 3 -27.17 -0.088 10.241 1 38.32 ? C41 L2P 302 A 1 HETATM 7 C C42 L2P . . . C 3 -26.282 -0.931 9.304 1 40.43 ? C42 L2P 302 A 1 HETATM 8 C C43 L2P . . . C 3 -26.698 -0.789 7.84 1 38.63 ? C43 L2P 302 A 1 HETATM 9 C C44 L2P . . . C 3 -27.731 -1.833 7.567 1 40.59 ? C44 L2P 302 A 1 HETATM 10 C C45 L2P . . . C 3 -25.515 -1.041 6.919 1 46.37 ? C45 L2P 302 A 1 HETATM 11 C C46 L2P . . . C 3 -26.005 -1.473 5.517 1 42.79 ? C46 L2P 302 A 1 HETATM 12 C C47 L2P . . . C 3 -25.77 -0.323 4.51 1 46.15 ? C47 L2P 302 A 1 HETATM 13 C C48 L2P . . . C 3 -24.498 -0.606 3.695 1 40.23 ? C48 L2P 302 A 1 HETATM 14 C C49 L2P . . . C 3 -23.466 0.4 4.065 1 46.31 ? C49 L2P 302 A 1 HETATM 15 C C50 L2P . . . C 3 -24.84 -0.517 2.207 1 46.14 ? C50 L2P 302 A 1 HETATM 16 C C51 L2P . . . C 3 -23.78 0.289 1.424 1 40.04 ? C51 L2P 302 A 1 HETATM 17 C C52 L2P . . . C 3 -24.427 0.91 0.166 1 44.42 ? C52 L2P 302 A 1 HETATM 18 C C53 L2P . . . C 3 -25.782 1.544 0.51 1 52.16 ? C53 L2P 302 A 1 HETATM 19 C C54 L2P . . . C 3 -26.813 1.021 -0.452 1 43.64 ? C54 L2P 302 A 1 HETATM 20 C C55 L2P . . . C 3 -25.682 3.064 0.454 1 52.16 ? C55 L2P 302 A 1 HETATM 21 C C56 L2P . . . C 3 -26.637 3.659 -0.621 1 42.39 ? C56 L2P 302 A 1 HETATM 22 C C57 L2P . . . C 3 -27.103 5.078 -0.251 1 41.21 ? C57 L2P 302 A 1 HETATM 23 C C58 L2P . . . C 3 -26.282 6.163 -0.968 1 43.66 ? C58 L2P 302 A 1 HETATM 24 C C59 L2P . . . C 3 -25.486 5.607 -2.126 1 52.5 ? C59 L2P 302 A 1 HETATM 25 C C60 L2P . . . C 3 -27.223 7.278 -1.489 1 46.18 ? C60 L2P 302 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 25 #