data_6GAX # _model_server_result.job_id Tzn2T8sBX06EZw2mk0W_rQ _model_server_result.datetime_utc '2025-07-01 04:28:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6gax # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":504}' # _entry.id 6GAX # _exptl.entry_id 6GAX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6GAX _cell.length_a 65.22 _cell.length_b 122.13 _cell.length_c 131.68 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6GAX _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_655 -x+1,y,-z -1 0 0 0 1 0 0 0 -1 65.22 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLY 158 A GLY 153 1_555 A N CSX 159 A CSX 154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.352 ? covale ? covale2 A C CSX 159 A CSX 154 1_555 A N ASP 160 A ASP 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.358 ? metalc ? metalc1 B O2P AMP . A AMP 501 1_555 C MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.96 ? metalc ? metalc2 C MG MG . A MG 502 1_555 H O HOH . A HOH 636 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.174 ? metalc ? metalc3 C MG MG . A MG 502 1_555 H O HOH . A HOH 648 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.13 ? metalc ? metalc4 C MG MG . A MG 502 1_555 H O HOH . A HOH 671 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.19 ? metalc ? metalc5 C MG MG . A MG 502 1_555 H O HOH . A HOH 721 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.104 ? metalc ? metalc6 C MG MG . A MG 502 1_555 H O HOH . A HOH 766 3_655 ? ? ? ? ? ? ? ? ? ? ? ? 2.157 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 136 n n C1 C2 EDO sing 137 n n C1 H11 EDO sing 138 n n C1 H12 EDO sing 139 n n O1 HO1 EDO sing 140 n n C2 O2 EDO sing 141 n n C2 H21 EDO sing 142 n n C2 H22 EDO sing 143 n n O2 HO2 EDO sing 144 n n # _atom_sites.entry_id 6GAX _atom_sites.fract_transf_matrix[1][1] 0.015333 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008188 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007594 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 AMP A 1 501 1 AMP AMP . C 3 MG A 1 502 1 MG MG . D 4 EDO A 1 503 1 EDO EDO . E 4 EDO A 1 504 2 EDO EDO . F 4 EDO A 1 505 3 EDO EDO . G 5 MOO A 1 506 1 MOO MOO . H 6 HOH A 1 601 111 HOH HOH . H 6 HOH A 2 602 62 HOH HOH . H 6 HOH A 3 603 176 HOH HOH . H 6 HOH A 4 604 27 HOH HOH . H 6 HOH A 5 605 84 HOH HOH . H 6 HOH A 6 606 60 HOH HOH . H 6 HOH A 7 607 114 HOH HOH . H 6 HOH A 8 608 166 HOH HOH . H 6 HOH A 9 609 47 HOH HOH . H 6 HOH A 10 610 207 HOH HOH . H 6 HOH A 11 611 173 HOH HOH . H 6 HOH A 12 612 61 HOH HOH . H 6 HOH A 13 613 55 HOH HOH . H 6 HOH A 14 614 75 HOH HOH . H 6 HOH A 15 615 194 HOH HOH . H 6 HOH A 16 616 109 HOH HOH . H 6 HOH A 17 617 34 HOH HOH . H 6 HOH A 18 618 12 HOH HOH . H 6 HOH A 19 619 91 HOH HOH . H 6 HOH A 20 620 180 HOH HOH . H 6 HOH A 21 621 21 HOH HOH . H 6 HOH A 22 622 44 HOH HOH . H 6 HOH A 23 623 41 HOH HOH . H 6 HOH A 24 624 164 HOH HOH . H 6 HOH A 25 625 88 HOH HOH . H 6 HOH A 26 626 179 HOH HOH . H 6 HOH A 27 627 218 HOH HOH . H 6 HOH A 28 628 7 HOH HOH . H 6 HOH A 29 629 64 HOH HOH . H 6 HOH A 30 630 8 HOH HOH . H 6 HOH A 31 631 172 HOH HOH . H 6 HOH A 32 632 48 HOH HOH . H 6 HOH A 33 633 196 HOH HOH . H 6 HOH A 34 634 18 HOH HOH . H 6 HOH A 35 635 190 HOH HOH . H 6 HOH A 36 636 2 HOH HOH . H 6 HOH A 37 637 206 HOH HOH . H 6 HOH A 38 638 19 HOH HOH . H 6 HOH A 39 639 104 HOH HOH . H 6 HOH A 40 640 225 HOH HOH . H 6 HOH A 41 641 249 HOH HOH . H 6 HOH A 42 642 171 HOH HOH . H 6 HOH A 43 643 181 HOH HOH . H 6 HOH A 44 644 72 HOH HOH . H 6 HOH A 45 645 99 HOH HOH . H 6 HOH A 46 646 150 HOH HOH . H 6 HOH A 47 647 71 HOH HOH . H 6 HOH A 48 648 3 HOH HOH . H 6 HOH A 49 649 228 HOH HOH . H 6 HOH A 50 650 28 HOH HOH . H 6 HOH A 51 651 89 HOH HOH . H 6 HOH A 52 652 123 HOH HOH . H 6 HOH A 53 653 191 HOH HOH . H 6 HOH A 54 654 238 HOH HOH . H 6 HOH A 55 655 74 HOH HOH . H 6 HOH A 56 656 66 HOH HOH . H 6 HOH A 57 657 15 HOH HOH . H 6 HOH A 58 658 102 HOH HOH . H 6 HOH A 59 659 189 HOH HOH . H 6 HOH A 60 660 32 HOH HOH . H 6 HOH A 61 661 147 HOH HOH . H 6 HOH A 62 662 127 HOH HOH . H 6 HOH A 63 663 95 HOH HOH . H 6 HOH A 64 664 243 HOH HOH . H 6 HOH A 65 665 70 HOH HOH . H 6 HOH A 66 666 94 HOH HOH . H 6 HOH A 67 667 108 HOH HOH . H 6 HOH A 68 668 113 HOH HOH . H 6 HOH A 69 669 56 HOH HOH . H 6 HOH A 70 670 97 HOH HOH . H 6 HOH A 71 671 1 HOH HOH . H 6 HOH A 72 672 112 HOH HOH . H 6 HOH A 73 673 132 HOH HOH . H 6 HOH A 74 674 200 HOH HOH . H 6 HOH A 75 675 157 HOH HOH . H 6 HOH A 76 676 251 HOH HOH . H 6 HOH A 77 677 227 HOH HOH . H 6 HOH A 78 678 170 HOH HOH . H 6 HOH A 79 679 11 HOH HOH . H 6 HOH A 80 680 184 HOH HOH . H 6 HOH A 81 681 65 HOH HOH . H 6 HOH A 82 682 237 HOH HOH . H 6 HOH A 83 683 77 HOH HOH . H 6 HOH A 84 684 153 HOH HOH . H 6 HOH A 85 685 131 HOH HOH . H 6 HOH A 86 686 76 HOH HOH . H 6 HOH A 87 687 233 HOH HOH . H 6 HOH A 88 688 199 HOH HOH . H 6 HOH A 89 689 245 HOH HOH . H 6 HOH A 90 690 115 HOH HOH . H 6 HOH A 91 691 93 HOH HOH . H 6 HOH A 92 692 156 HOH HOH . H 6 HOH A 93 693 151 HOH HOH . H 6 HOH A 94 694 226 HOH HOH . H 6 HOH A 95 695 250 HOH HOH . H 6 HOH A 96 696 140 HOH HOH . H 6 HOH A 97 697 141 HOH HOH . H 6 HOH A 98 698 244 HOH HOH . H 6 HOH A 99 699 158 HOH HOH . H 6 HOH A 100 700 197 HOH HOH . H 6 HOH A 101 701 235 HOH HOH . H 6 HOH A 102 702 78 HOH HOH . H 6 HOH A 103 703 51 HOH HOH . H 6 HOH A 104 704 192 HOH HOH . H 6 HOH A 105 705 59 HOH HOH . H 6 HOH A 106 706 30 HOH HOH . H 6 HOH A 107 707 81 HOH HOH . H 6 HOH A 108 708 67 HOH HOH . H 6 HOH A 109 709 17 HOH HOH . H 6 HOH A 110 710 154 HOH HOH . H 6 HOH A 111 711 31 HOH HOH . H 6 HOH A 112 712 33 HOH HOH . H 6 HOH A 113 713 49 HOH HOH . H 6 HOH A 114 714 148 HOH HOH . H 6 HOH A 115 715 209 HOH HOH . H 6 HOH A 116 716 159 HOH HOH . H 6 HOH A 117 717 136 HOH HOH . H 6 HOH A 118 718 45 HOH HOH . H 6 HOH A 119 719 68 HOH HOH . H 6 HOH A 120 720 25 HOH HOH . H 6 HOH A 121 721 5 HOH HOH . H 6 HOH A 122 722 37 HOH HOH . H 6 HOH A 123 723 105 HOH HOH . H 6 HOH A 124 724 9 HOH HOH . H 6 HOH A 125 725 82 HOH HOH . H 6 HOH A 126 726 85 HOH HOH . H 6 HOH A 127 727 13 HOH HOH . H 6 HOH A 128 728 186 HOH HOH . H 6 HOH A 129 729 161 HOH HOH . H 6 HOH A 130 730 187 HOH HOH . H 6 HOH A 131 731 205 HOH HOH . H 6 HOH A 132 732 133 HOH HOH . H 6 HOH A 133 733 149 HOH HOH . H 6 HOH A 134 734 90 HOH HOH . H 6 HOH A 135 735 117 HOH HOH . H 6 HOH A 136 736 92 HOH HOH . H 6 HOH A 137 737 36 HOH HOH . H 6 HOH A 138 738 54 HOH HOH . H 6 HOH A 139 739 188 HOH HOH . H 6 HOH A 140 740 215 HOH HOH . H 6 HOH A 141 741 126 HOH HOH . H 6 HOH A 142 742 139 HOH HOH . H 6 HOH A 143 743 40 HOH HOH . H 6 HOH A 144 744 35 HOH HOH . H 6 HOH A 145 745 86 HOH HOH . H 6 HOH A 146 746 20 HOH HOH . H 6 HOH A 147 747 144 HOH HOH . H 6 HOH A 148 748 248 HOH HOH . H 6 HOH A 149 749 239 HOH HOH . H 6 HOH A 150 750 46 HOH HOH . H 6 HOH A 151 751 198 HOH HOH . H 6 HOH A 152 752 146 HOH HOH . H 6 HOH A 153 753 128 HOH HOH . H 6 HOH A 154 754 69 HOH HOH . H 6 HOH A 155 755 204 HOH HOH . H 6 HOH A 156 756 26 HOH HOH . H 6 HOH A 157 757 106 HOH HOH . H 6 HOH A 158 758 29 HOH HOH . H 6 HOH A 159 759 142 HOH HOH . H 6 HOH A 160 760 130 HOH HOH . H 6 HOH A 161 761 177 HOH HOH . H 6 HOH A 162 762 10 HOH HOH . H 6 HOH A 163 763 42 HOH HOH . H 6 HOH A 164 764 195 HOH HOH . H 6 HOH A 165 765 80 HOH HOH . H 6 HOH A 166 766 4 HOH HOH . H 6 HOH A 167 767 183 HOH HOH . H 6 HOH A 168 768 100 HOH HOH . H 6 HOH A 169 769 202 HOH HOH . H 6 HOH A 170 770 23 HOH HOH . H 6 HOH A 171 771 96 HOH HOH . H 6 HOH A 172 772 39 HOH HOH . H 6 HOH A 173 773 22 HOH HOH . H 6 HOH A 174 774 6 HOH HOH . H 6 HOH A 175 775 63 HOH HOH . H 6 HOH A 176 776 107 HOH HOH . H 6 HOH A 177 777 58 HOH HOH . H 6 HOH A 178 778 16 HOH HOH . H 6 HOH A 179 779 201 HOH HOH . H 6 HOH A 180 780 38 HOH HOH . H 6 HOH A 181 781 14 HOH HOH . H 6 HOH A 182 782 53 HOH HOH . H 6 HOH A 183 783 242 HOH HOH . H 6 HOH A 184 784 98 HOH HOH . H 6 HOH A 185 785 220 HOH HOH . H 6 HOH A 186 786 234 HOH HOH . H 6 HOH A 187 787 229 HOH HOH . H 6 HOH A 188 788 138 HOH HOH . H 6 HOH A 189 789 110 HOH HOH . H 6 HOH A 190 790 101 HOH HOH . H 6 HOH A 191 791 125 HOH HOH . H 6 HOH A 192 792 203 HOH HOH . H 6 HOH A 193 793 163 HOH HOH . H 6 HOH A 194 794 222 HOH HOH . H 6 HOH A 195 795 178 HOH HOH . H 6 HOH A 196 796 208 HOH HOH . H 6 HOH A 197 797 43 HOH HOH . H 6 HOH A 198 798 246 HOH HOH . H 6 HOH A 199 799 83 HOH HOH . H 6 HOH A 200 800 182 HOH HOH . H 6 HOH A 201 801 87 HOH HOH . H 6 HOH A 202 802 253 HOH HOH . H 6 HOH A 203 803 50 HOH HOH . H 6 HOH A 204 804 252 HOH HOH . H 6 HOH A 205 805 167 HOH HOH . H 6 HOH A 206 806 241 HOH HOH . H 6 HOH A 207 807 24 HOH HOH . H 6 HOH A 208 808 169 HOH HOH . H 6 HOH A 209 809 57 HOH HOH . H 6 HOH A 210 810 213 HOH HOH . H 6 HOH A 211 811 79 HOH HOH . H 6 HOH A 212 812 121 HOH HOH . H 6 HOH A 213 813 162 HOH HOH . H 6 HOH A 214 814 193 HOH HOH . H 6 HOH A 215 815 240 HOH HOH . H 6 HOH A 216 816 143 HOH HOH . H 6 HOH A 217 817 160 HOH HOH . H 6 HOH A 218 818 219 HOH HOH . H 6 HOH A 219 819 175 HOH HOH . H 6 HOH A 220 820 254 HOH HOH . H 6 HOH A 221 821 145 HOH HOH . H 6 HOH A 222 822 124 HOH HOH . H 6 HOH A 223 823 223 HOH HOH . H 6 HOH A 224 824 120 HOH HOH . H 6 HOH A 225 825 236 HOH HOH . H 6 HOH A 226 826 116 HOH HOH . H 6 HOH A 227 827 52 HOH HOH . H 6 HOH A 228 828 73 HOH HOH . H 6 HOH A 229 829 212 HOH HOH . H 6 HOH A 230 830 232 HOH HOH . H 6 HOH A 231 831 174 HOH HOH . H 6 HOH A 232 832 224 HOH HOH . H 6 HOH A 233 833 221 HOH HOH . H 6 HOH A 234 834 214 HOH HOH . H 6 HOH A 235 835 216 HOH HOH . H 6 HOH A 236 836 119 HOH HOH . H 6 HOH A 237 837 137 HOH HOH . H 6 HOH A 238 838 231 HOH HOH . H 6 HOH A 239 839 118 HOH HOH . H 6 HOH A 240 840 155 HOH HOH . H 6 HOH A 241 841 134 HOH HOH . H 6 HOH A 242 842 247 HOH HOH . H 6 HOH A 243 843 185 HOH HOH . H 6 HOH A 244 844 210 HOH HOH . H 6 HOH A 245 845 168 HOH HOH . H 6 HOH A 246 846 211 HOH HOH . H 6 HOH A 247 847 103 HOH HOH . H 6 HOH A 248 848 230 HOH HOH . H 6 HOH A 249 849 152 HOH HOH . H 6 HOH A 250 850 217 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . E 4 30.839 5.228 -9.114 1 59.28 ? C1 EDO 504 A 1 HETATM 2 O O1 EDO . . . E 4 30.054 4.793 -8.004 1 61.22 ? O1 EDO 504 A 1 HETATM 3 C C2 EDO . . . E 4 32.313 5.064 -8.797 1 59.15 ? C2 EDO 504 A 1 HETATM 4 O O2 EDO . . . E 4 32.705 3.696 -8.91 1 62.22 ? O2 EDO 504 A 1 HETATM 5 H H11 EDO . . . E 4 30.61 6.269 -9.329 0 59.28 ? H11 EDO 504 A 1 HETATM 6 H H12 EDO . . . E 4 30.595 4.641 -9.998 0 59.28 ? H12 EDO 504 A 1 HETATM 7 H HO1 EDO . . . E 4 30.244 3.864 -7.813 0 61.22 ? HO1 EDO 504 A 1 HETATM 8 H H21 EDO . . . E 4 32.515 5.409 -7.783 0 59.15 ? H21 EDO 504 A 1 HETATM 9 H H22 EDO . . . E 4 32.888 5.664 -9.495 0 59.15 ? H22 EDO 504 A 1 HETATM 10 H HO2 EDO . . . E 4 33.574 3.644 -9.33 0 62.23 ? HO2 EDO 504 A 1 # _model_server_stats.io_time_ms 24 _model_server_stats.parse_time_ms 28 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 291 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 10 #