data_6GB1 # _model_server_result.job_id Z2AzjPiX46p63QrPQ-0xgQ _model_server_result.datetime_utc '2025-03-04 21:28:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6gb1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":203}' # _entry.id 6GB1 # _exptl.entry_id 6GB1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 118.174 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description HEXANE-1,6-DIOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6GB1 _cell.length_a 55.55 _cell.length_b 55.55 _cell.length_c 138.83 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6GB1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 29 A CYS 46 1_555 A SG CYS 54 A CYS 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? disulf ? disulf2 A SG CYS 45 A CYS 62 1_555 A SG CYS 87 A CYS 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf3 A SG CYS 68 A CYS 85 1_555 A SG CYS 109 A CYS 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf4 B SG CYS 10 B CYS 18 1_555 B SG CYS 31 B CYS 39 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? covale ? covale1 B C LEU 18 B LEU 26 1_555 B N AIB 19 B AIB 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.373 ? covale ? covale2 B C AIB 19 B AIB 27 1_555 B N ALA 20 B ALA 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.352 ? covale ? covale3 B C CYS 31 B CYS 39 1_555 B N NH2 32 B NH2 40 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? # _chem_comp.formula 'C6 H14 O2' _chem_comp.formula_weight 118.174 _chem_comp.id HEZ _chem_comp.mon_nstd_flag . _chem_comp.name HEXANE-1,6-DIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C1 HEZ sing 144 n n O1 HO1 HEZ sing 145 n n C1 C2 HEZ sing 146 n n C1 H11 HEZ sing 147 n n C1 H12 HEZ sing 148 n n C2 C3 HEZ sing 149 n n C2 H21 HEZ sing 150 n n C2 H22 HEZ sing 151 n n C3 C4 HEZ sing 152 n n C3 H31 HEZ sing 153 n n C3 H32 HEZ sing 154 n n C4 C5 HEZ sing 155 n n C4 H41 HEZ sing 156 n n C4 H42 HEZ sing 157 n n C5 C6 HEZ sing 158 n n C5 H51 HEZ sing 159 n n C5 H52 HEZ sing 160 n n C6 O6 HEZ sing 161 n n C6 H61 HEZ sing 162 n n C6 H62 HEZ sing 163 n n O6 HO6 HEZ sing 164 n n # _atom_sites.entry_id 6GB1 _atom_sites.fract_transf_matrix[1][1] 0.018002 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018002 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007203 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 SO4 A 1 201 3 SO4 SO4 . D 3 SO4 A 1 202 4 SO4 SO4 . E 4 HEZ A 1 203 2 HEZ HEZ . F 4 HEZ B 1 101 1 HEZ HEZ . G 5 HOH A 1 301 12 HOH HOH . G 5 HOH A 2 302 15 HOH HOH . G 5 HOH A 3 303 6 HOH HOH . G 5 HOH A 4 304 14 HOH HOH . G 5 HOH A 5 305 29 HOH HOH . G 5 HOH A 6 306 16 HOH HOH . G 5 HOH A 7 307 13 HOH HOH . G 5 HOH A 8 308 11 HOH HOH . G 5 HOH A 9 309 34 HOH HOH . G 5 HOH A 10 310 2 HOH HOH . G 5 HOH A 11 311 1 HOH HOH . G 5 HOH A 12 312 18 HOH HOH . G 5 HOH A 13 313 4 HOH HOH . G 5 HOH A 14 314 32 HOH HOH . G 5 HOH A 15 315 24 HOH HOH . G 5 HOH A 16 316 8 HOH HOH . G 5 HOH A 17 317 19 HOH HOH . G 5 HOH A 18 318 35 HOH HOH . G 5 HOH A 19 319 38 HOH HOH . G 5 HOH A 20 320 42 HOH HOH . G 5 HOH A 21 321 22 HOH HOH . G 5 HOH A 22 322 25 HOH HOH . G 5 HOH A 23 323 26 HOH HOH . G 5 HOH A 24 324 40 HOH HOH . G 5 HOH A 25 325 17 HOH HOH . G 5 HOH A 26 326 37 HOH HOH . G 5 HOH A 27 327 23 HOH HOH . G 5 HOH A 28 328 27 HOH HOH . G 5 HOH A 29 329 5 HOH HOH . G 5 HOH A 30 330 20 HOH HOH . G 5 HOH A 31 331 33 HOH HOH . G 5 HOH A 32 332 36 HOH HOH . G 5 HOH A 33 333 30 HOH HOH . G 5 HOH A 34 334 31 HOH HOH . G 5 HOH A 35 335 21 HOH HOH . G 5 HOH A 36 336 10 HOH HOH . G 5 HOH A 37 337 7 HOH HOH . G 5 HOH A 38 338 41 HOH HOH . G 5 HOH A 39 339 39 HOH HOH . H 5 HOH B 1 201 28 HOH HOH . H 5 HOH B 2 202 3 HOH HOH . H 5 HOH B 3 203 9 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 HEZ . . . E 4 -22.818 -6.874 -20.495 0.99 87.14 ? O1 HEZ 203 A 1 HETATM 2 C C1 HEZ . . . E 4 -23.394 -8.157 -20.166 0.99 90.54 ? C1 HEZ 203 A 1 HETATM 3 C C2 HEZ . . . E 4 -22.412 -9.083 -19.434 0.99 89.59 ? C2 HEZ 203 A 1 HETATM 4 C C3 HEZ . . . E 4 -21.974 -8.497 -18.085 0.99 90.02 ? C3 HEZ 203 A 1 HETATM 5 C C4 HEZ . . . E 4 -20.5 -8.696 -17.721 0.99 88.79 ? C4 HEZ 203 A 1 HETATM 6 C C5 HEZ . . . E 4 -19.549 -7.813 -18.531 0.99 86.57 ? C5 HEZ 203 A 1 HETATM 7 C C6 HEZ . . . E 4 -18.803 -8.679 -19.546 0.99 84.55 ? C6 HEZ 203 A 1 HETATM 8 O O6 HEZ . . . E 4 -17.977 -7.891 -20.407 0.99 83.11 ? O6 HEZ 203 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 274 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 8 #