data_6GB3 # _model_server_result.job_id tHTX_K-3mcakgbMk9vKQBA _model_server_result.datetime_utc '2025-07-03 20:07:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6gb3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":500}' # _entry.id 6GB3 # _exptl.entry_id 6GB3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.344 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 112.9 _cell.angle_gamma 90 _cell.entry_id 6GB3 _cell.length_a 89.879 _cell.length_b 30.978 _cell.length_c 49.477 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6GB3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_554 -x,y,-z-1 -1 0 0 0 1 0 0 0 -1 19.252686 0 -45.57749 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMN sing 83 n n N1 C10 FMN doub 84 n n C2 O2 FMN doub 85 n n C2 N3 FMN sing 86 n n N3 C4 FMN sing 87 n n N3 HN3 FMN sing 88 n n C4 O4 FMN doub 89 n n C4 C4A FMN sing 90 n n C4A N5 FMN doub 91 n n C4A C10 FMN sing 92 n n N5 C5A FMN sing 93 n n C5A C6 FMN doub 94 n y C5A C9A FMN sing 95 n y C6 C7 FMN sing 96 n y C6 H6 FMN sing 97 n n C7 C7M FMN sing 98 n n C7 C8 FMN doub 99 n y C7M HM71 FMN sing 100 n n C7M HM72 FMN sing 101 n n C7M HM73 FMN sing 102 n n C8 C8M FMN sing 103 n n C8 C9 FMN sing 104 n y C8M HM81 FMN sing 105 n n C8M HM82 FMN sing 106 n n C8M HM83 FMN sing 107 n n C9 C9A FMN doub 108 n y C9 H9 FMN sing 109 n n C9A N10 FMN sing 110 n n N10 C10 FMN sing 111 n n N10 C1' FMN sing 112 n n C1' C2' FMN sing 113 n n C1' "H1'1" FMN sing 114 n n C1' "H1'2" FMN sing 115 n n C2' O2' FMN sing 116 n n C2' C3' FMN sing 117 n n C2' H2' FMN sing 118 n n O2' HO2' FMN sing 119 n n C3' O3' FMN sing 120 n n C3' C4' FMN sing 121 n n C3' H3' FMN sing 122 n n O3' HO3' FMN sing 123 n n C4' O4' FMN sing 124 n n C4' C5' FMN sing 125 n n C4' H4' FMN sing 126 n n O4' HO4' FMN sing 127 n n C5' O5' FMN sing 128 n n C5' "H5'1" FMN sing 129 n n C5' "H5'2" FMN sing 130 n n O5' P FMN sing 131 n n P O1P FMN doub 132 n n P O2P FMN sing 133 n n P O3P FMN sing 134 n n O2P HOP2 FMN sing 135 n n O3P HOP3 FMN sing 136 n n # _atom_sites.entry_id 6GB3 _atom_sites.fract_transf_matrix[1][1] 0.011126 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004699 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.032281 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.02194 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FMN A 1 500 500 FMN FMN . C 3 HOH A 1 601 66 HOH HOH . C 3 HOH A 2 602 61 HOH HOH . C 3 HOH A 3 603 51 HOH HOH . C 3 HOH A 4 604 14 HOH HOH . C 3 HOH A 5 605 57 HOH HOH . C 3 HOH A 6 606 52 HOH HOH . C 3 HOH A 7 607 36 HOH HOH . C 3 HOH A 8 608 1 HOH HOH . C 3 HOH A 9 609 23 HOH HOH . C 3 HOH A 10 610 21 HOH HOH . C 3 HOH A 11 611 22 HOH HOH . C 3 HOH A 12 612 38 HOH HOH . C 3 HOH A 13 613 8 HOH HOH . C 3 HOH A 14 614 50 HOH HOH . C 3 HOH A 15 615 24 HOH HOH . C 3 HOH A 16 616 12 HOH HOH . C 3 HOH A 17 617 15 HOH HOH . C 3 HOH A 18 618 5 HOH HOH . C 3 HOH A 19 619 9 HOH HOH . C 3 HOH A 20 620 40 HOH HOH . C 3 HOH A 21 621 26 HOH HOH . C 3 HOH A 22 622 13 HOH HOH . C 3 HOH A 23 623 46 HOH HOH . C 3 HOH A 24 624 2 HOH HOH . C 3 HOH A 25 625 62 HOH HOH . C 3 HOH A 26 626 34 HOH HOH . C 3 HOH A 27 627 41 HOH HOH . C 3 HOH A 28 628 29 HOH HOH . C 3 HOH A 29 629 30 HOH HOH . C 3 HOH A 30 630 27 HOH HOH . C 3 HOH A 31 631 45 HOH HOH . C 3 HOH A 32 632 7 HOH HOH . C 3 HOH A 33 633 35 HOH HOH . C 3 HOH A 34 634 44 HOH HOH . C 3 HOH A 35 635 20 HOH HOH . C 3 HOH A 36 636 31 HOH HOH . C 3 HOH A 37 637 28 HOH HOH . C 3 HOH A 38 638 17 HOH HOH . C 3 HOH A 39 639 49 HOH HOH . C 3 HOH A 40 640 39 HOH HOH . C 3 HOH A 41 641 11 HOH HOH . C 3 HOH A 42 642 47 HOH HOH . C 3 HOH A 43 643 33 HOH HOH . C 3 HOH A 44 644 37 HOH HOH . C 3 HOH A 45 645 16 HOH HOH . C 3 HOH A 46 646 63 HOH HOH . C 3 HOH A 47 647 19 HOH HOH . C 3 HOH A 48 648 6 HOH HOH . C 3 HOH A 49 649 10 HOH HOH . C 3 HOH A 50 650 59 HOH HOH . C 3 HOH A 51 651 65 HOH HOH . C 3 HOH A 52 652 25 HOH HOH . C 3 HOH A 53 653 18 HOH HOH . C 3 HOH A 54 654 3 HOH HOH . C 3 HOH A 55 655 4 HOH HOH . C 3 HOH A 56 656 32 HOH HOH . C 3 HOH A 57 657 56 HOH HOH . C 3 HOH A 58 658 67 HOH HOH . C 3 HOH A 59 659 55 HOH HOH . C 3 HOH A 60 660 43 HOH HOH . C 3 HOH A 61 661 48 HOH HOH . C 3 HOH A 62 662 60 HOH HOH . C 3 HOH A 63 663 58 HOH HOH . C 3 HOH A 64 664 42 HOH HOH . C 3 HOH A 65 665 64 HOH HOH . C 3 HOH A 66 666 53 HOH HOH . C 3 HOH A 67 667 54 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . B 2 11.157 -2.44 -2.342 1 10.7 ? N1 FMN 500 A 1 HETATM 2 C C2 FMN . . . B 2 11.771 -1.806 -1.281 1 12.4 ? C2 FMN 500 A 1 HETATM 3 O O2 FMN . . . B 2 11.911 -2.399 -0.217 1 12.98 ? O2 FMN 500 A 1 HETATM 4 N N3 FMN . . . B 2 12.222 -0.508 -1.406 1 12 ? N3 FMN 500 A 1 HETATM 5 C C4 FMN . . . B 2 12.069 0.176 -2.591 1 12.15 ? C4 FMN 500 A 1 HETATM 6 O O4 FMN . . . B 2 12.479 1.338 -2.677 1 10.36 ? O4 FMN 500 A 1 HETATM 7 C C4A FMN . . . B 2 11.465 -0.457 -3.668 1 9.12 ? C4A FMN 500 A 1 HETATM 8 N N5 FMN . . . B 2 11.308 0.201 -4.862 1 10.1 ? N5 FMN 500 A 1 HETATM 9 C C5A FMN . . . B 2 10.678 -0.438 -5.917 1 10.36 ? C5A FMN 500 A 1 HETATM 10 C C6 FMN . . . B 2 10.525 0.243 -7.117 1 13.02 ? C6 FMN 500 A 1 HETATM 11 C C7 FMN . . . B 2 9.905 -0.373 -8.197 1 10.87 ? C7 FMN 500 A 1 HETATM 12 C C7M FMN . . . B 2 9.75 0.393 -9.486 1 11.96 ? C7M FMN 500 A 1 HETATM 13 C C8 FMN . . . B 2 9.444 -1.682 -8.073 1 12.47 ? C8 FMN 500 A 1 HETATM 14 C C8M FMN . . . B 2 8.772 -2.357 -9.24 1 12.61 ? C8M FMN 500 A 1 HETATM 15 C C9 FMN . . . B 2 9.599 -2.369 -6.87 1 11.79 ? C9 FMN 500 A 1 HETATM 16 C C9A FMN . . . B 2 10.221 -1.748 -5.788 1 10.65 ? C9A FMN 500 A 1 HETATM 17 N N10 FMN . . . B 2 10.41 -2.423 -4.587 1 10.01 ? N10 FMN 500 A 1 HETATM 18 C C10 FMN . . . B 2 11.012 -1.767 -3.535 1 9.03 ? C10 FMN 500 A 1 HETATM 19 C C1' FMN . . . B 2 9.902 -3.817 -4.364 1 8.98 ? C1' FMN 500 A 1 HETATM 20 C C2' FMN . . . B 2 10.797 -4.985 -4.76 1 12.45 ? C2' FMN 500 A 1 HETATM 21 O O2' FMN . . . B 2 11.354 -4.774 -6.037 1 13.01 ? O2' FMN 500 A 1 HETATM 22 C C3' FMN . . . B 2 9.926 -6.237 -4.818 1 15.52 ? C3' FMN 500 A 1 HETATM 23 O O3' FMN . . . B 2 8.847 -5.99 -5.696 1 15.84 ? O3' FMN 500 A 1 HETATM 24 C C4' FMN . . . B 2 9.386 -6.618 -3.441 1 18.13 ? C4' FMN 500 A 1 HETATM 25 O O4' FMN . . . B 2 10.455 -7.067 -2.639 1 17.57 ? O4' FMN 500 A 1 HETATM 26 C C5' FMN . . . B 2 8.322 -7.713 -3.504 1 22.89 ? C5' FMN 500 A 1 HETATM 27 O O5' FMN . . . B 2 8.719 -8.71 -4.417 1 24.95 ? O5' FMN 500 A 1 HETATM 28 P P FMN . . . B 2 9.46 -10.03 -3.875 1 31.57 ? P FMN 500 A 1 HETATM 29 O O1P FMN . . . B 2 8.523 -10.702 -2.89 1 31.51 ? O1P FMN 500 A 1 HETATM 30 O O2P FMN . . . B 2 9.748 -10.935 -5.056 1 30.87 ? O2P FMN 500 A 1 HETATM 31 O O3P FMN . . . B 2 10.764 -9.647 -3.199 1 32.91 ? O3P FMN 500 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 361 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 31 #