data_6GB4 # _model_server_result.job_id oAPI8FxOSq9d16TplU0JvQ _model_server_result.datetime_utc '2025-07-05 06:52:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6gb4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":503}' # _entry.id 6GB4 # _exptl.entry_id 6GB4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6GB4 _cell.length_a 65.31 _cell.length_b 122.58 _cell.length_c 133 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6GB4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_655 -x+1,y,-z -1 0 0 0 1 0 0 0 -1 65.31 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLY 153 A GLY 153 1_555 A N CSX 154 A CSX 154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.354 ? covale ? covale2 A C CSX 154 A CSX 154 1_555 A N ASP 155 A ASP 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.363 ? metalc ? metalc1 B O2P AMP . A AMP 501 1_555 C MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.941 ? metalc ? metalc2 C MG MG . A MG 502 1_555 G O HOH . A HOH 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.102 ? metalc ? metalc3 C MG MG . A MG 502 1_555 G O HOH . A HOH 639 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? metalc ? metalc4 C MG MG . A MG 502 1_555 G O HOH . A HOH 697 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.003 ? metalc ? metalc5 C MG MG . A MG 502 1_555 G O HOH . A HOH 743 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? metalc ? metalc6 C MG MG . A MG 502 1_555 G O HOH . A HOH 752 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 136 n n C1 C2 EDO sing 137 n n C1 H11 EDO sing 138 n n C1 H12 EDO sing 139 n n O1 HO1 EDO sing 140 n n C2 O2 EDO sing 141 n n C2 H21 EDO sing 142 n n C2 H22 EDO sing 143 n n O2 HO2 EDO sing 144 n n # _atom_sites.entry_id 6GB4 _atom_sites.fract_transf_matrix[1][1] 0.015312 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008158 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007519 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 AMP A 1 501 1 AMP AMP . C 3 MG A 1 502 1 MG MG . D 4 EDO A 1 503 1 EDO EDO . E 4 EDO A 1 504 2 EDO EDO . F 5 MOO A 1 505 1 MOO MOO . G 6 HOH A 1 601 53 HOH HOH . G 6 HOH A 2 602 239 HOH HOH . G 6 HOH A 3 603 210 HOH HOH . G 6 HOH A 4 604 2 HOH HOH . G 6 HOH A 5 605 189 HOH HOH . G 6 HOH A 6 606 119 HOH HOH . G 6 HOH A 7 607 211 HOH HOH . G 6 HOH A 8 608 130 HOH HOH . G 6 HOH A 9 609 74 HOH HOH . G 6 HOH A 10 610 48 HOH HOH . G 6 HOH A 11 611 178 HOH HOH . G 6 HOH A 12 612 135 HOH HOH . G 6 HOH A 13 613 219 HOH HOH . G 6 HOH A 14 614 85 HOH HOH . G 6 HOH A 15 615 168 HOH HOH . G 6 HOH A 16 616 253 HOH HOH . G 6 HOH A 17 617 84 HOH HOH . G 6 HOH A 18 618 32 HOH HOH . G 6 HOH A 19 619 193 HOH HOH . G 6 HOH A 20 620 150 HOH HOH . G 6 HOH A 21 621 80 HOH HOH . G 6 HOH A 22 622 228 HOH HOH . G 6 HOH A 23 623 28 HOH HOH . G 6 HOH A 24 624 100 HOH HOH . G 6 HOH A 25 625 79 HOH HOH . G 6 HOH A 26 626 223 HOH HOH . G 6 HOH A 27 627 16 HOH HOH . G 6 HOH A 28 628 149 HOH HOH . G 6 HOH A 29 629 252 HOH HOH . G 6 HOH A 30 630 185 HOH HOH . G 6 HOH A 31 631 64 HOH HOH . G 6 HOH A 32 632 87 HOH HOH . G 6 HOH A 33 633 82 HOH HOH . G 6 HOH A 34 634 101 HOH HOH . G 6 HOH A 35 635 8 HOH HOH . G 6 HOH A 36 636 203 HOH HOH . G 6 HOH A 37 637 231 HOH HOH . G 6 HOH A 38 638 118 HOH HOH . G 6 HOH A 39 639 1 HOH HOH . G 6 HOH A 40 640 68 HOH HOH . G 6 HOH A 41 641 17 HOH HOH . G 6 HOH A 42 642 83 HOH HOH . G 6 HOH A 43 643 169 HOH HOH . G 6 HOH A 44 644 237 HOH HOH . G 6 HOH A 45 645 103 HOH HOH . G 6 HOH A 46 646 75 HOH HOH . G 6 HOH A 47 647 94 HOH HOH . G 6 HOH A 48 648 233 HOH HOH . G 6 HOH A 49 649 19 HOH HOH . G 6 HOH A 50 650 18 HOH HOH . G 6 HOH A 51 651 6 HOH HOH . G 6 HOH A 52 652 81 HOH HOH . G 6 HOH A 53 653 240 HOH HOH . G 6 HOH A 54 654 198 HOH HOH . G 6 HOH A 55 655 11 HOH HOH . G 6 HOH A 56 656 128 HOH HOH . G 6 HOH A 57 657 226 HOH HOH . G 6 HOH A 58 658 14 HOH HOH . G 6 HOH A 59 659 52 HOH HOH . G 6 HOH A 60 660 138 HOH HOH . G 6 HOH A 61 661 108 HOH HOH . G 6 HOH A 62 662 23 HOH HOH . G 6 HOH A 63 663 136 HOH HOH . G 6 HOH A 64 664 251 HOH HOH . G 6 HOH A 65 665 110 HOH HOH . G 6 HOH A 66 666 224 HOH HOH . G 6 HOH A 67 667 72 HOH HOH . G 6 HOH A 68 668 41 HOH HOH . G 6 HOH A 69 669 38 HOH HOH . G 6 HOH A 70 670 125 HOH HOH . G 6 HOH A 71 671 172 HOH HOH . G 6 HOH A 72 672 57 HOH HOH . G 6 HOH A 73 673 115 HOH HOH . G 6 HOH A 74 674 200 HOH HOH . G 6 HOH A 75 675 166 HOH HOH . G 6 HOH A 76 676 158 HOH HOH . G 6 HOH A 77 677 45 HOH HOH . G 6 HOH A 78 678 175 HOH HOH . G 6 HOH A 79 679 63 HOH HOH . G 6 HOH A 80 680 184 HOH HOH . G 6 HOH A 81 681 133 HOH HOH . G 6 HOH A 82 682 195 HOH HOH . G 6 HOH A 83 683 164 HOH HOH . G 6 HOH A 84 684 212 HOH HOH . G 6 HOH A 85 685 229 HOH HOH . G 6 HOH A 86 686 167 HOH HOH . G 6 HOH A 87 687 163 HOH HOH . G 6 HOH A 88 688 49 HOH HOH . G 6 HOH A 89 689 191 HOH HOH . G 6 HOH A 90 690 162 HOH HOH . G 6 HOH A 91 691 147 HOH HOH . G 6 HOH A 92 692 244 HOH HOH . G 6 HOH A 93 693 60 HOH HOH . G 6 HOH A 94 694 141 HOH HOH . G 6 HOH A 95 695 99 HOH HOH . G 6 HOH A 96 696 22 HOH HOH . G 6 HOH A 97 697 5 HOH HOH . G 6 HOH A 98 698 156 HOH HOH . G 6 HOH A 99 699 124 HOH HOH . G 6 HOH A 100 700 221 HOH HOH . G 6 HOH A 101 701 131 HOH HOH . G 6 HOH A 102 702 132 HOH HOH . G 6 HOH A 103 703 47 HOH HOH . G 6 HOH A 104 704 15 HOH HOH . G 6 HOH A 105 705 30 HOH HOH . G 6 HOH A 106 706 7 HOH HOH . G 6 HOH A 107 707 62 HOH HOH . G 6 HOH A 108 708 180 HOH HOH . G 6 HOH A 109 709 92 HOH HOH . G 6 HOH A 110 710 236 HOH HOH . G 6 HOH A 111 711 46 HOH HOH . G 6 HOH A 112 712 243 HOH HOH . G 6 HOH A 113 713 241 HOH HOH . G 6 HOH A 114 714 26 HOH HOH . G 6 HOH A 115 715 116 HOH HOH . G 6 HOH A 116 716 33 HOH HOH . G 6 HOH A 117 717 230 HOH HOH . G 6 HOH A 118 718 27 HOH HOH . G 6 HOH A 119 719 179 HOH HOH . G 6 HOH A 120 720 42 HOH HOH . G 6 HOH A 121 721 35 HOH HOH . G 6 HOH A 122 722 70 HOH HOH . G 6 HOH A 123 723 107 HOH HOH . G 6 HOH A 124 724 250 HOH HOH . G 6 HOH A 125 725 29 HOH HOH . G 6 HOH A 126 726 113 HOH HOH . G 6 HOH A 127 727 56 HOH HOH . G 6 HOH A 128 728 140 HOH HOH . G 6 HOH A 129 729 34 HOH HOH . G 6 HOH A 130 730 170 HOH HOH . G 6 HOH A 131 731 235 HOH HOH . G 6 HOH A 132 732 69 HOH HOH . G 6 HOH A 133 733 160 HOH HOH . G 6 HOH A 134 734 106 HOH HOH . G 6 HOH A 135 735 50 HOH HOH . G 6 HOH A 136 736 199 HOH HOH . G 6 HOH A 137 737 111 HOH HOH . G 6 HOH A 138 738 153 HOH HOH . G 6 HOH A 139 739 176 HOH HOH . G 6 HOH A 140 740 61 HOH HOH . G 6 HOH A 141 741 134 HOH HOH . G 6 HOH A 142 742 36 HOH HOH . G 6 HOH A 143 743 3 HOH HOH . G 6 HOH A 144 744 24 HOH HOH . G 6 HOH A 145 745 88 HOH HOH . G 6 HOH A 146 746 59 HOH HOH . G 6 HOH A 147 747 173 HOH HOH . G 6 HOH A 148 748 12 HOH HOH . G 6 HOH A 149 749 71 HOH HOH . G 6 HOH A 150 750 183 HOH HOH . G 6 HOH A 151 751 121 HOH HOH . G 6 HOH A 152 752 4 HOH HOH . G 6 HOH A 153 753 148 HOH HOH . G 6 HOH A 154 754 144 HOH HOH . G 6 HOH A 155 755 77 HOH HOH . G 6 HOH A 156 756 154 HOH HOH . G 6 HOH A 157 757 157 HOH HOH . G 6 HOH A 158 758 91 HOH HOH . G 6 HOH A 159 759 129 HOH HOH . G 6 HOH A 160 760 122 HOH HOH . G 6 HOH A 161 761 227 HOH HOH . G 6 HOH A 162 762 40 HOH HOH . G 6 HOH A 163 763 126 HOH HOH . G 6 HOH A 164 764 109 HOH HOH . G 6 HOH A 165 765 123 HOH HOH . G 6 HOH A 166 766 13 HOH HOH . G 6 HOH A 167 767 117 HOH HOH . G 6 HOH A 168 768 44 HOH HOH . G 6 HOH A 169 769 54 HOH HOH . G 6 HOH A 170 770 165 HOH HOH . G 6 HOH A 171 771 127 HOH HOH . G 6 HOH A 172 772 182 HOH HOH . G 6 HOH A 173 773 31 HOH HOH . G 6 HOH A 174 774 10 HOH HOH . G 6 HOH A 175 775 21 HOH HOH . G 6 HOH A 176 776 43 HOH HOH . G 6 HOH A 177 777 67 HOH HOH . G 6 HOH A 178 778 174 HOH HOH . G 6 HOH A 179 779 89 HOH HOH . G 6 HOH A 180 780 218 HOH HOH . G 6 HOH A 181 781 143 HOH HOH . G 6 HOH A 182 782 120 HOH HOH . G 6 HOH A 183 783 159 HOH HOH . G 6 HOH A 184 784 58 HOH HOH . G 6 HOH A 185 785 105 HOH HOH . G 6 HOH A 186 786 255 HOH HOH . G 6 HOH A 187 787 66 HOH HOH . G 6 HOH A 188 788 190 HOH HOH . G 6 HOH A 189 789 104 HOH HOH . G 6 HOH A 190 790 51 HOH HOH . G 6 HOH A 191 791 161 HOH HOH . G 6 HOH A 192 792 9 HOH HOH . G 6 HOH A 193 793 245 HOH HOH . G 6 HOH A 194 794 215 HOH HOH . G 6 HOH A 195 795 96 HOH HOH . G 6 HOH A 196 796 20 HOH HOH . G 6 HOH A 197 797 93 HOH HOH . G 6 HOH A 198 798 37 HOH HOH . G 6 HOH A 199 799 76 HOH HOH . G 6 HOH A 200 800 39 HOH HOH . G 6 HOH A 201 801 196 HOH HOH . G 6 HOH A 202 802 214 HOH HOH . G 6 HOH A 203 803 248 HOH HOH . G 6 HOH A 204 804 155 HOH HOH . G 6 HOH A 205 805 192 HOH HOH . G 6 HOH A 206 806 142 HOH HOH . G 6 HOH A 207 807 102 HOH HOH . G 6 HOH A 208 808 213 HOH HOH . G 6 HOH A 209 809 246 HOH HOH . G 6 HOH A 210 810 65 HOH HOH . G 6 HOH A 211 811 73 HOH HOH . G 6 HOH A 212 812 201 HOH HOH . G 6 HOH A 213 813 55 HOH HOH . G 6 HOH A 214 814 151 HOH HOH . G 6 HOH A 215 815 254 HOH HOH . G 6 HOH A 216 816 202 HOH HOH . G 6 HOH A 217 817 186 HOH HOH . G 6 HOH A 218 818 208 HOH HOH . G 6 HOH A 219 819 152 HOH HOH . G 6 HOH A 220 820 249 HOH HOH . G 6 HOH A 221 821 95 HOH HOH . G 6 HOH A 222 822 25 HOH HOH . G 6 HOH A 223 823 209 HOH HOH . G 6 HOH A 224 824 220 HOH HOH . G 6 HOH A 225 825 137 HOH HOH . G 6 HOH A 226 826 146 HOH HOH . G 6 HOH A 227 827 181 HOH HOH . G 6 HOH A 228 828 197 HOH HOH . G 6 HOH A 229 829 217 HOH HOH . G 6 HOH A 230 830 216 HOH HOH . G 6 HOH A 231 831 90 HOH HOH . G 6 HOH A 232 832 222 HOH HOH . G 6 HOH A 233 833 171 HOH HOH . G 6 HOH A 234 834 206 HOH HOH . G 6 HOH A 235 835 97 HOH HOH . G 6 HOH A 236 836 194 HOH HOH . G 6 HOH A 237 837 188 HOH HOH . G 6 HOH A 238 838 225 HOH HOH . G 6 HOH A 239 839 232 HOH HOH . G 6 HOH A 240 840 204 HOH HOH . G 6 HOH A 241 841 86 HOH HOH . G 6 HOH A 242 842 114 HOH HOH . G 6 HOH A 243 843 234 HOH HOH . G 6 HOH A 244 844 242 HOH HOH . G 6 HOH A 245 845 145 HOH HOH . G 6 HOH A 246 846 98 HOH HOH . G 6 HOH A 247 847 247 HOH HOH . G 6 HOH A 248 848 177 HOH HOH . G 6 HOH A 249 849 238 HOH HOH . G 6 HOH A 250 850 78 HOH HOH . G 6 HOH A 251 851 187 HOH HOH . G 6 HOH A 252 852 205 HOH HOH . G 6 HOH A 253 853 139 HOH HOH . G 6 HOH A 254 854 112 HOH HOH . G 6 HOH A 255 855 207 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . D 4 19.781 21.516 5.51 1 31.4 ? C1 EDO 503 A 1 HETATM 2 O O1 EDO . . . D 4 18.403 21.191 5.275 1 30.13 ? O1 EDO 503 A 1 HETATM 3 C C2 EDO . . . D 4 20.514 21.942 4.234 1 35.99 ? C2 EDO 503 A 1 HETATM 4 O O2 EDO . . . D 4 19.836 23.059 3.605 1 36.15 ? O2 EDO 503 A 1 HETATM 5 H H11 EDO . . . D 4 20.272 20.647 5.944 0 31.45 ? H11 EDO 503 A 1 HETATM 6 H H12 EDO . . . D 4 19.839 22.326 6.239 0 31.45 ? H12 EDO 503 A 1 HETATM 7 H HO1 EDO . . . D 4 17.862 21.769 5.83 0 30.18 ? HO1 EDO 503 A 1 HETATM 8 H H21 EDO . . . D 4 20.556 21.099 3.547 0 36.04 ? H21 EDO 503 A 1 HETATM 9 H H22 EDO . . . D 4 21.538 22.228 4.479 0 36.04 ? H22 EDO 503 A 1 HETATM 10 H HO2 EDO . . . D 4 20.452 23.48 2.99 0 36.19 ? HO2 EDO 503 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 253 _model_server_stats.encode_time_ms 14 _model_server_stats.element_count 10 #