data_6GB5
#
_model_server_result.job_id            7n6hz9k6XN0KDsmdrsljCw 
_model_server_result.datetime_utc      '2024-11-12 21:21:54' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6gb5 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":403}' 
#
_entry.id    6GB5 
#
_exptl.entry_id    6GB5 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          103.73 
_cell.angle_gamma         90 
_cell.entry_id            6GB5 
_cell.length_a            91.93 
_cell.length_b            123.36 
_cell.length_c            99.206 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6GB5 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? tetrameric 4 author_defined_assembly 1 
? tetrameric 4 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,H,I,J,K,R,S,V 1 1 
C,D,F,G,L,M,N,O,P,Q,T,U,W 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 6 K N N 
? 6 P N N 
? 6 Q N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 203 A CYS 203 1_555 A SG CYS 259 A CYS 259 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
disulf ? disulf2 B SG CYS 25 B CYS 25 1_555 B SG CYS 80 B CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? 
disulf ? disulf3 C SG CYS 101 C CYS 101 1_555 C SG CYS 164 C CYS 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.155 ? 
disulf ? disulf4 C SG CYS 203 C CYS 203 1_555 C SG CYS 259 C CYS 259 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.998 ? 
disulf ? disulf5 D SG CYS 25 D CYS 25 1_555 D SG CYS 80 D CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     6GB5 
_atom_sites.fract_transf_matrix[1][1]    0.010878 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002657 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008106 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010377 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 5 SO4 A 1 401 5 SO4 SO4 . 
J 5 SO4 A 1 402 7 SO4 SO4 . 
K 6 GOL A 1 403 1 GOL GOL . 
L 5 SO4 C 1 401 1 SO4 SO4 . 
M 5 SO4 C 1 402 4 SO4 SO4 . 
N 5 SO4 C 1 403 6 SO4 SO4 . 
O 5 SO4 C 1 404 8 SO4 SO4 . 
P 6 GOL C 1 405 2 GOL GOL . 
Q 6 GOL D 1 101 3 GOL GOL . 
R 7 HOH A 1 501 11 HOH HOH . 
R 7 HOH A 2 502 12 HOH HOH . 
R 7 HOH A 3 503 74 HOH HOH . 
R 7 HOH A 4 504 31 HOH HOH . 
R 7 HOH A 5 505 50 HOH HOH . 
R 7 HOH A 6 506 1 HOH HOH . 
R 7 HOH A 7 507 24 HOH HOH . 
R 7 HOH A 8 508 43 HOH HOH . 
R 7 HOH A 9 509 9 HOH HOH . 
R 7 HOH A 10 510 45 HOH HOH . 
R 7 HOH A 11 511 70 HOH HOH . 
R 7 HOH A 12 512 38 HOH HOH . 
R 7 HOH A 13 513 143 HOH HOH . 
R 7 HOH A 14 514 37 HOH HOH . 
R 7 HOH A 15 515 139 HOH HOH . 
R 7 HOH A 16 516 57 HOH HOH . 
R 7 HOH A 17 517 18 HOH HOH . 
R 7 HOH A 18 518 13 HOH HOH . 
R 7 HOH A 19 519 41 HOH HOH . 
R 7 HOH A 20 520 19 HOH HOH . 
R 7 HOH A 21 521 52 HOH HOH . 
R 7 HOH A 22 522 158 HOH HOH . 
R 7 HOH A 23 523 94 HOH HOH . 
R 7 HOH A 24 524 85 HOH HOH . 
R 7 HOH A 25 525 25 HOH HOH . 
R 7 HOH A 26 526 149 HOH HOH . 
R 7 HOH A 27 527 163 HOH HOH . 
R 7 HOH A 28 528 72 HOH HOH . 
R 7 HOH A 29 529 144 HOH HOH . 
R 7 HOH A 30 530 30 HOH HOH . 
R 7 HOH A 31 531 87 HOH HOH . 
R 7 HOH A 32 532 140 HOH HOH . 
R 7 HOH A 33 533 155 HOH HOH . 
R 7 HOH A 34 534 141 HOH HOH . 
R 7 HOH A 35 535 138 HOH HOH . 
R 7 HOH A 36 536 148 HOH HOH . 
R 7 HOH A 37 537 160 HOH HOH . 
R 7 HOH A 38 538 156 HOH HOH . 
R 7 HOH A 39 539 151 HOH HOH . 
R 7 HOH A 40 540 182 HOH HOH . 
R 7 HOH A 41 541 86 HOH HOH . 
R 7 HOH A 42 542 171 HOH HOH . 
R 7 HOH A 43 543 152 HOH HOH . 
R 7 HOH A 44 544 161 HOH HOH . 
R 7 HOH A 45 545 88 HOH HOH . 
S 7 HOH B 1 101 14 HOH HOH . 
S 7 HOH B 2 102 78 HOH HOH . 
S 7 HOH B 3 103 56 HOH HOH . 
S 7 HOH B 4 104 66 HOH HOH . 
S 7 HOH B 5 105 178 HOH HOH . 
S 7 HOH B 6 106 46 HOH HOH . 
S 7 HOH B 7 107 75 HOH HOH . 
S 7 HOH B 8 108 55 HOH HOH . 
S 7 HOH B 9 109 44 HOH HOH . 
S 7 HOH B 10 110 84 HOH HOH . 
S 7 HOH B 11 111 73 HOH HOH . 
S 7 HOH B 12 112 34 HOH HOH . 
S 7 HOH B 13 113 81 HOH HOH . 
S 7 HOH B 14 114 71 HOH HOH . 
S 7 HOH B 15 115 51 HOH HOH . 
S 7 HOH B 16 116 83 HOH HOH . 
S 7 HOH B 17 117 23 HOH HOH . 
S 7 HOH B 18 118 176 HOH HOH . 
S 7 HOH B 19 119 181 HOH HOH . 
S 7 HOH B 20 120 82 HOH HOH . 
S 7 HOH B 21 121 168 HOH HOH . 
S 7 HOH B 22 122 2 HOH HOH . 
S 7 HOH B 23 123 90 HOH HOH . 
S 7 HOH B 24 124 95 HOH HOH . 
S 7 HOH B 25 125 137 HOH HOH . 
S 7 HOH B 26 126 40 HOH HOH . 
S 7 HOH B 27 127 180 HOH HOH . 
S 7 HOH B 28 128 170 HOH HOH . 
S 7 HOH B 29 129 169 HOH HOH . 
T 7 HOH C 1 501 106 HOH HOH . 
T 7 HOH C 2 502 29 HOH HOH . 
T 7 HOH C 3 503 36 HOH HOH . 
T 7 HOH C 4 504 7 HOH HOH . 
T 7 HOH C 5 505 99 HOH HOH . 
T 7 HOH C 6 506 42 HOH HOH . 
T 7 HOH C 7 507 27 HOH HOH . 
T 7 HOH C 8 508 58 HOH HOH . 
T 7 HOH C 9 509 35 HOH HOH . 
T 7 HOH C 10 510 104 HOH HOH . 
T 7 HOH C 11 511 173 HOH HOH . 
T 7 HOH C 12 512 26 HOH HOH . 
T 7 HOH C 13 513 101 HOH HOH . 
T 7 HOH C 14 514 175 HOH HOH . 
T 7 HOH C 15 515 22 HOH HOH . 
T 7 HOH C 16 516 28 HOH HOH . 
T 7 HOH C 17 517 20 HOH HOH . 
T 7 HOH C 18 518 6 HOH HOH . 
T 7 HOH C 19 519 109 HOH HOH . 
T 7 HOH C 20 520 47 HOH HOH . 
T 7 HOH C 21 521 129 HOH HOH . 
T 7 HOH C 22 522 118 HOH HOH . 
T 7 HOH C 23 523 92 HOH HOH . 
T 7 HOH C 24 524 91 HOH HOH . 
T 7 HOH C 25 525 145 HOH HOH . 
T 7 HOH C 26 526 5 HOH HOH . 
T 7 HOH C 27 527 3 HOH HOH . 
T 7 HOH C 28 528 8 HOH HOH . 
T 7 HOH C 29 529 132 HOH HOH . 
T 7 HOH C 30 530 117 HOH HOH . 
T 7 HOH C 31 531 105 HOH HOH . 
T 7 HOH C 32 532 32 HOH HOH . 
T 7 HOH C 33 533 53 HOH HOH . 
T 7 HOH C 34 534 54 HOH HOH . 
T 7 HOH C 35 535 17 HOH HOH . 
T 7 HOH C 36 536 76 HOH HOH . 
T 7 HOH C 37 537 102 HOH HOH . 
T 7 HOH C 38 538 21 HOH HOH . 
T 7 HOH C 39 539 64 HOH HOH . 
T 7 HOH C 40 540 60 HOH HOH . 
T 7 HOH C 41 541 128 HOH HOH . 
T 7 HOH C 42 542 150 HOH HOH . 
T 7 HOH C 43 543 63 HOH HOH . 
T 7 HOH C 44 544 135 HOH HOH . 
T 7 HOH C 45 545 61 HOH HOH . 
T 7 HOH C 46 546 110 HOH HOH . 
T 7 HOH C 47 547 108 HOH HOH . 
T 7 HOH C 48 548 100 HOH HOH . 
T 7 HOH C 49 549 103 HOH HOH . 
T 7 HOH C 50 550 111 HOH HOH . 
T 7 HOH C 51 551 107 HOH HOH . 
T 7 HOH C 52 552 59 HOH HOH . 
U 7 HOH D 1 201 174 HOH HOH . 
U 7 HOH D 2 202 15 HOH HOH . 
U 7 HOH D 3 203 49 HOH HOH . 
U 7 HOH D 4 204 67 HOH HOH . 
U 7 HOH D 5 205 114 HOH HOH . 
U 7 HOH D 6 206 16 HOH HOH . 
U 7 HOH D 7 207 113 HOH HOH . 
U 7 HOH D 8 208 96 HOH HOH . 
U 7 HOH D 9 209 124 HOH HOH . 
U 7 HOH D 10 210 115 HOH HOH . 
U 7 HOH D 11 211 48 HOH HOH . 
U 7 HOH D 12 212 131 HOH HOH . 
U 7 HOH D 13 213 62 HOH HOH . 
U 7 HOH D 14 214 126 HOH HOH . 
U 7 HOH D 15 215 122 HOH HOH . 
U 7 HOH D 16 216 116 HOH HOH . 
U 7 HOH D 17 217 77 HOH HOH . 
U 7 HOH D 18 218 121 HOH HOH . 
U 7 HOH D 19 219 10 HOH HOH . 
U 7 HOH D 20 220 127 HOH HOH . 
U 7 HOH D 21 221 130 HOH HOH . 
V 7 HOH E 1 101 79 HOH HOH . 
V 7 HOH E 2 102 142 HOH HOH . 
W 7 HOH F 1 101 93 HOH HOH . 
W 7 HOH F 2 102 39 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . K 6 1.723 -37.308 97.916 1 59.53 ? C1 GOL 403 A 1 
HETATM 2 O O1 GOL . . . K 6 2.373 -38.252 97.088 1 56.41 ? O1 GOL 403 A 1 
HETATM 3 C C2 GOL . . . K 6 2.68 -36.255 98.414 1 60.79 ? C2 GOL 403 A 1 
HETATM 4 O O2 GOL . . . K 6 2.765 -35.26 97.418 1 59.7 ? O2 GOL 403 A 1 
HETATM 5 C C3 GOL . . . K 6 2.102 -35.626 99.658 1 63.13 ? C3 GOL 403 A 1 
HETATM 6 O O3 GOL . . . K 6 3.032 -34.73 100.253 1 69.23 ? O3 GOL 403 A 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           277 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           6 
#