data_6GB8 # _model_server_result.job_id VyD1UUJHPhzMRDJj8cAuGw _model_server_result.datetime_utc '2024-11-07 12:39:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6gb8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 6GB8 # _exptl.entry_id 6GB8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 63.546 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'COPPER (II) ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6GB8 _cell.length_a 96.382 _cell.length_b 96.382 _cell.length_c 96.382 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6GB8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 198 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_555 z+1/2,-x+1/2,-y 0 0 1 -1 0 0 0 -1 0 48.191 48.191 0 3 'crystal symmetry operation' 12_554 -y+1/2,-z,x-1/2 0 -1 0 0 0 -1 1 0 0 48.191 0 -48.191 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A ND1 HIS 95 A HIS 95 1_555 B CU CU . A CU 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.098 ? metalc ? metalc2 A NE2 HIS 100 A HIS 100 1_555 C CU CU . A CU 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? metalc ? metalc3 A NE2 HIS 135 A HIS 135 1_555 C CU CU . A CU 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? metalc ? metalc4 A SG CYS 136 A CYS 136 1_555 B CU CU . A CU 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.235 ? metalc ? metalc5 A ND1 HIS 145 A HIS 145 1_555 B CU CU . A CU 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.976 ? metalc ? metalc6 A SD MET 150 A MET 150 1_555 B CU CU . A CU 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.598 ? metalc ? metalc7 A NE2 HIS 306 A HIS 306 1_555 C CU CU . A CU 502 12_554 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? metalc ? metalc8 C CU CU . A CU 502 1_555 D N NO2 . A NO2 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.183 ? metalc ? metalc9 C CU CU . A CU 502 1_555 D O2 NO2 . A NO2 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.127 ? metalc ? metalc10 C CU CU . A CU 502 1_555 D O1 NO2 . A NO2 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.165 ? # _chem_comp.formula 'Cu 2' _chem_comp.formula_weight 63.546 _chem_comp.id CU _chem_comp.mon_nstd_flag . _chem_comp.name 'COPPER (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6GB8 _atom_sites.fract_transf_matrix[1][1] 0.010375 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010375 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010375 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CU A 1 501 501 CU CU . C 2 CU A 1 502 502 CU CU . D 3 NO2 A 1 503 1 NO2 NO2 . E 4 HOH A 1 601 65 HOH HOH . E 4 HOH A 2 602 40 HOH HOH . E 4 HOH A 3 603 126 HOH HOH . E 4 HOH A 4 604 17 HOH HOH . E 4 HOH A 5 605 106 HOH HOH . E 4 HOH A 6 606 53 HOH HOH . E 4 HOH A 7 607 146 HOH HOH . E 4 HOH A 8 608 127 HOH HOH . E 4 HOH A 9 609 77 HOH HOH . E 4 HOH A 10 610 19 HOH HOH . E 4 HOH A 11 611 27 HOH HOH . E 4 HOH A 12 612 130 HOH HOH . E 4 HOH A 13 613 28 HOH HOH . E 4 HOH A 14 614 16 HOH HOH . E 4 HOH A 15 615 69 HOH HOH . E 4 HOH A 16 616 59 HOH HOH . E 4 HOH A 17 617 123 HOH HOH . E 4 HOH A 18 618 101 HOH HOH . E 4 HOH A 19 619 121 HOH HOH . E 4 HOH A 20 620 35 HOH HOH . E 4 HOH A 21 621 42 HOH HOH . E 4 HOH A 22 622 98 HOH HOH . E 4 HOH A 23 623 145 HOH HOH . E 4 HOH A 24 624 144 HOH HOH . E 4 HOH A 25 625 102 HOH HOH . E 4 HOH A 26 626 60 HOH HOH . E 4 HOH A 27 627 109 HOH HOH . E 4 HOH A 28 628 93 HOH HOH . E 4 HOH A 29 629 148 HOH HOH . E 4 HOH A 30 630 116 HOH HOH . E 4 HOH A 31 631 63 HOH HOH . E 4 HOH A 32 632 99 HOH HOH . E 4 HOH A 33 633 2 HOH HOH . E 4 HOH A 34 634 120 HOH HOH . E 4 HOH A 35 635 108 HOH HOH . E 4 HOH A 36 636 50 HOH HOH . E 4 HOH A 37 637 30 HOH HOH . E 4 HOH A 38 638 20 HOH HOH . E 4 HOH A 39 639 140 HOH HOH . E 4 HOH A 40 640 134 HOH HOH . E 4 HOH A 41 641 82 HOH HOH . E 4 HOH A 42 642 18 HOH HOH . E 4 HOH A 43 643 5 HOH HOH . E 4 HOH A 44 644 118 HOH HOH . E 4 HOH A 45 645 33 HOH HOH . E 4 HOH A 46 646 23 HOH HOH . E 4 HOH A 47 647 37 HOH HOH . E 4 HOH A 48 648 1 HOH HOH . E 4 HOH A 49 649 25 HOH HOH . E 4 HOH A 50 650 90 HOH HOH . E 4 HOH A 51 651 84 HOH HOH . E 4 HOH A 52 652 52 HOH HOH . E 4 HOH A 53 653 6 HOH HOH . E 4 HOH A 54 654 97 HOH HOH . E 4 HOH A 55 655 21 HOH HOH . E 4 HOH A 56 656 51 HOH HOH . E 4 HOH A 57 657 64 HOH HOH . E 4 HOH A 58 658 47 HOH HOH . E 4 HOH A 59 659 61 HOH HOH . E 4 HOH A 60 660 4 HOH HOH . E 4 HOH A 61 661 113 HOH HOH . E 4 HOH A 62 662 100 HOH HOH . E 4 HOH A 63 663 139 HOH HOH . E 4 HOH A 64 664 147 HOH HOH . E 4 HOH A 65 665 79 HOH HOH . E 4 HOH A 66 666 132 HOH HOH . E 4 HOH A 67 667 24 HOH HOH . E 4 HOH A 68 668 14 HOH HOH . E 4 HOH A 69 669 26 HOH HOH . E 4 HOH A 70 670 119 HOH HOH . E 4 HOH A 71 671 62 HOH HOH . E 4 HOH A 72 672 68 HOH HOH . E 4 HOH A 73 673 41 HOH HOH . E 4 HOH A 74 674 7 HOH HOH . E 4 HOH A 75 675 141 HOH HOH . E 4 HOH A 76 676 10 HOH HOH . E 4 HOH A 77 677 9 HOH HOH . E 4 HOH A 78 678 66 HOH HOH . E 4 HOH A 79 679 31 HOH HOH . E 4 HOH A 80 680 95 HOH HOH . E 4 HOH A 81 681 11 HOH HOH . E 4 HOH A 82 682 122 HOH HOH . E 4 HOH A 83 683 124 HOH HOH . E 4 HOH A 84 684 15 HOH HOH . E 4 HOH A 85 685 13 HOH HOH . E 4 HOH A 86 686 22 HOH HOH . E 4 HOH A 87 687 89 HOH HOH . E 4 HOH A 88 688 115 HOH HOH . E 4 HOH A 89 689 36 HOH HOH . E 4 HOH A 90 690 34 HOH HOH . E 4 HOH A 91 691 3 HOH HOH . E 4 HOH A 92 692 91 HOH HOH . E 4 HOH A 93 693 150 HOH HOH . E 4 HOH A 94 694 129 HOH HOH . E 4 HOH A 95 695 39 HOH HOH . E 4 HOH A 96 696 88 HOH HOH . E 4 HOH A 97 697 104 HOH HOH . E 4 HOH A 98 698 85 HOH HOH . E 4 HOH A 99 699 57 HOH HOH . E 4 HOH A 100 700 76 HOH HOH . E 4 HOH A 101 701 111 HOH HOH . E 4 HOH A 102 702 43 HOH HOH . E 4 HOH A 103 703 142 HOH HOH . E 4 HOH A 104 704 152 HOH HOH . E 4 HOH A 105 705 38 HOH HOH . E 4 HOH A 106 706 46 HOH HOH . E 4 HOH A 107 707 29 HOH HOH . E 4 HOH A 108 708 32 HOH HOH . E 4 HOH A 109 709 105 HOH HOH . E 4 HOH A 110 710 128 HOH HOH . E 4 HOH A 111 711 131 HOH HOH . E 4 HOH A 112 712 133 HOH HOH . E 4 HOH A 113 713 45 HOH HOH . E 4 HOH A 114 714 136 HOH HOH . E 4 HOH A 115 715 125 HOH HOH . E 4 HOH A 116 716 67 HOH HOH . E 4 HOH A 117 717 70 HOH HOH . E 4 HOH A 118 718 96 HOH HOH . E 4 HOH A 119 719 80 HOH HOH . E 4 HOH A 120 720 44 HOH HOH . E 4 HOH A 121 721 49 HOH HOH . E 4 HOH A 122 722 94 HOH HOH . E 4 HOH A 123 723 48 HOH HOH . E 4 HOH A 124 724 74 HOH HOH . E 4 HOH A 125 725 86 HOH HOH . E 4 HOH A 126 726 56 HOH HOH . E 4 HOH A 127 727 103 HOH HOH . E 4 HOH A 128 728 137 HOH HOH . E 4 HOH A 129 729 12 HOH HOH . E 4 HOH A 130 730 143 HOH HOH . E 4 HOH A 131 731 75 HOH HOH . E 4 HOH A 132 732 135 HOH HOH . E 4 HOH A 133 733 149 HOH HOH . E 4 HOH A 134 734 138 HOH HOH . E 4 HOH A 135 735 58 HOH HOH . E 4 HOH A 136 736 71 HOH HOH . E 4 HOH A 137 737 114 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CU _atom_site.label_atom_id CU _atom_site.label_comp_id CU _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x 33.312 _atom_site.Cartn_y 31.216 _atom_site.Cartn_z 4.451 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 21.15 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CU _atom_site.auth_comp_id CU _atom_site.auth_seq_id 501 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 62 _model_server_stats.parse_time_ms 30 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 292 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #