data_6GBI # _model_server_result.job_id MqshQ_TCPodWFkKI198GIw _model_server_result.datetime_utc '2024-10-19 19:40:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6gbi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":203}' # _entry.id 6GBI # _exptl.entry_id 6GBI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6GBI _cell.length_a 61.98 _cell.length_b 61.98 _cell.length_c 68.55 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6GBI _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 6 A CYS 49 1_555 A SG CYS 34 A CYS 77 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf2 A SG CYS 9 A CYS 52 1_555 A SG CYS 18 A CYS 61 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf3 A SG CYS 27 A CYS 70 1_555 A SG CYS 53 A CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? disulf ? disulf4 A SG CYS 59 A CYS 102 1_555 A SG CYS 78 A CYS 121 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf5 A SG CYS 64 A CYS 107 1_555 A SG CYS 75 A CYS 118 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? disulf ? disulf6 A SG CYS 79 A CYS 122 1_555 A SG CYS 84 A CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? covale ? covale1 A ND2 ASN 91 A ASN 134 1_555 B C1 NAG . A NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 6GBI _atom_sites.fract_transf_matrix[1][1] 0.016134 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016134 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014588 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAG A 1 201 151 NAG NAG . C 3 GOL A 1 202 161 GOL GOL . D 3 GOL A 1 203 162 GOL GOL . E 4 SO4 A 1 204 171 SO4 SO4 . F 4 SO4 A 1 205 172 SO4 SO4 . G 5 HOH A 1 301 234 HOH HOH . G 5 HOH A 2 302 188 HOH HOH . G 5 HOH A 3 303 316 HOH HOH . G 5 HOH A 4 304 202 HOH HOH . G 5 HOH A 5 305 242 HOH HOH . G 5 HOH A 6 306 201 HOH HOH . G 5 HOH A 7 307 199 HOH HOH . G 5 HOH A 8 308 198 HOH HOH . G 5 HOH A 9 309 200 HOH HOH . G 5 HOH A 10 310 215 HOH HOH . G 5 HOH A 11 311 240 HOH HOH . G 5 HOH A 12 312 205 HOH HOH . G 5 HOH A 13 313 297 HOH HOH . G 5 HOH A 14 314 236 HOH HOH . G 5 HOH A 15 315 220 HOH HOH . G 5 HOH A 16 316 197 HOH HOH . G 5 HOH A 17 317 309 HOH HOH . G 5 HOH A 18 318 306 HOH HOH . G 5 HOH A 19 319 190 HOH HOH . G 5 HOH A 20 320 278 HOH HOH . G 5 HOH A 21 321 183 HOH HOH . G 5 HOH A 22 322 187 HOH HOH . G 5 HOH A 23 323 182 HOH HOH . G 5 HOH A 24 324 181 HOH HOH . G 5 HOH A 25 325 244 HOH HOH . G 5 HOH A 26 326 213 HOH HOH . G 5 HOH A 27 327 305 HOH HOH . G 5 HOH A 28 328 302 HOH HOH . G 5 HOH A 29 329 225 HOH HOH . G 5 HOH A 30 330 196 HOH HOH . G 5 HOH A 31 331 219 HOH HOH . G 5 HOH A 32 332 312 HOH HOH . G 5 HOH A 33 333 185 HOH HOH . G 5 HOH A 34 334 195 HOH HOH . G 5 HOH A 35 335 307 HOH HOH . G 5 HOH A 36 336 308 HOH HOH . G 5 HOH A 37 337 184 HOH HOH . G 5 HOH A 38 338 246 HOH HOH . G 5 HOH A 39 339 204 HOH HOH . G 5 HOH A 40 340 210 HOH HOH . G 5 HOH A 41 341 313 HOH HOH . G 5 HOH A 42 342 251 HOH HOH . G 5 HOH A 43 343 304 HOH HOH . G 5 HOH A 44 344 237 HOH HOH . G 5 HOH A 45 345 231 HOH HOH . G 5 HOH A 46 346 186 HOH HOH . G 5 HOH A 47 347 203 HOH HOH . G 5 HOH A 48 348 299 HOH HOH . G 5 HOH A 49 349 216 HOH HOH . G 5 HOH A 50 350 214 HOH HOH . G 5 HOH A 51 351 193 HOH HOH . G 5 HOH A 52 352 314 HOH HOH . G 5 HOH A 53 353 311 HOH HOH . G 5 HOH A 54 354 289 HOH HOH . G 5 HOH A 55 355 208 HOH HOH . G 5 HOH A 56 356 296 HOH HOH . G 5 HOH A 57 357 206 HOH HOH . G 5 HOH A 58 358 212 HOH HOH . G 5 HOH A 59 359 222 HOH HOH . G 5 HOH A 60 360 207 HOH HOH . G 5 HOH A 61 361 243 HOH HOH . G 5 HOH A 62 362 191 HOH HOH . G 5 HOH A 63 363 221 HOH HOH . G 5 HOH A 64 364 248 HOH HOH . G 5 HOH A 65 365 227 HOH HOH . G 5 HOH A 66 366 255 HOH HOH . G 5 HOH A 67 367 228 HOH HOH . G 5 HOH A 68 368 241 HOH HOH . G 5 HOH A 69 369 194 HOH HOH . G 5 HOH A 70 370 189 HOH HOH . G 5 HOH A 71 371 256 HOH HOH . G 5 HOH A 72 372 260 HOH HOH . G 5 HOH A 73 373 224 HOH HOH . G 5 HOH A 74 374 300 HOH HOH . G 5 HOH A 75 375 303 HOH HOH . G 5 HOH A 76 376 263 HOH HOH . G 5 HOH A 77 377 192 HOH HOH . G 5 HOH A 78 378 217 HOH HOH . G 5 HOH A 79 379 232 HOH HOH . G 5 HOH A 80 380 301 HOH HOH . G 5 HOH A 81 381 223 HOH HOH . G 5 HOH A 82 382 274 HOH HOH . G 5 HOH A 83 383 264 HOH HOH . G 5 HOH A 84 384 226 HOH HOH . G 5 HOH A 85 385 298 HOH HOH . G 5 HOH A 86 386 310 HOH HOH . G 5 HOH A 87 387 229 HOH HOH . G 5 HOH A 88 388 245 HOH HOH . G 5 HOH A 89 389 295 HOH HOH . G 5 HOH A 90 390 259 HOH HOH . G 5 HOH A 91 391 315 HOH HOH . G 5 HOH A 92 392 262 HOH HOH . G 5 HOH A 93 393 291 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 3 23.901 65.489 24.706 1 36.08 ? C1 GOL 203 A 1 HETATM 2 O O1 GOL . . . D 3 23.411 64.267 25.275 1 35.36 ? O1 GOL 203 A 1 HETATM 3 C C2 GOL . . . D 3 25.326 65.317 24.189 1 34.52 ? C2 GOL 203 A 1 HETATM 4 O O2 GOL . . . D 3 26.228 65.239 25.298 1 37.44 ? O2 GOL 203 A 1 HETATM 5 C C3 GOL . . . D 3 25.436 64.064 23.321 1 32.59 ? C3 GOL 203 A 1 HETATM 6 O O3 GOL . . . D 3 26.78 63.864 22.861 1 35.11 ? O3 GOL 203 A 1 # _model_server_stats.io_time_ms 78 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 313 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #