data_6GBS
#
_model_server_result.job_id            69d-v_CFt_Que2rR5J22dw 
_model_server_result.datetime_utc      '2024-11-09 01:25:03' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6gbs 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":402}' 
#
_entry.id    6GBS 
#
_exptl.entry_id    6GBS 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    12 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         104.48 
_cell.angle_beta          101.39 
_cell.angle_gamma         111.61 
_cell.entry_id            6GBS 
_cell.length_a            52.595 
_cell.length_b            69.719 
_cell.length_c            70.947 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6GBS 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
? 2 I N N 
? 2 K N N 
? 2 L N N 
? 2 M N N 
? 2 N N N 
? 2 O N N 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 83 n n 
C1 C2 EDO sing 84 n n 
C1 H11 EDO sing 85 n n 
C1 H12 EDO sing 86 n n 
O1 HO1 EDO sing 87 n n 
C2 O2 EDO sing 88 n n 
C2 H21 EDO sing 89 n n 
C2 H22 EDO sing 90 n n 
O2 HO2 EDO sing 91 n n 
#
_atom_sites.entry_id                     6GBS 
_atom_sites.fract_transf_matrix[1][1]    0.019013 
_atom_sites.fract_transf_matrix[1][2]    0.007532 
_atom_sites.fract_transf_matrix[1][3]    0.006949 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015428 
_atom_sites.fract_transf_matrix[2][3]    0.005844 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.015375 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 EDO A 1 401 2 EDO EDO . 
D 2 EDO A 1 402 5 EDO EDO . 
E 2 EDO A 1 403 6 EDO EDO . 
F 2 EDO A 1 404 7 EDO EDO . 
G 2 EDO A 1 405 8 EDO EDO . 
H 2 EDO A 1 406 10 EDO EDO . 
I 2 EDO A 1 407 15 EDO EDO . 
J 3 PEG A 1 408 1 PEG PEG . 
K 2 EDO B 1 401 3 EDO EDO . 
L 2 EDO B 1 402 4 EDO EDO . 
M 2 EDO B 1 403 9 EDO EDO . 
N 2 EDO B 1 404 11 EDO EDO . 
O 2 EDO B 1 405 14 EDO EDO . 
P 4 HOH A 1 501 76 HOH HOH . 
P 4 HOH A 2 502 217 HOH HOH . 
P 4 HOH A 3 503 108 HOH HOH . 
P 4 HOH A 4 504 30 HOH HOH . 
P 4 HOH A 5 505 22 HOH HOH . 
P 4 HOH A 6 506 41 HOH HOH . 
P 4 HOH A 7 507 235 HOH HOH . 
P 4 HOH A 8 508 23 HOH HOH . 
P 4 HOH A 9 509 218 HOH HOH . 
P 4 HOH A 10 510 46 HOH HOH . 
P 4 HOH A 11 511 121 HOH HOH . 
P 4 HOH A 12 512 85 HOH HOH . 
P 4 HOH A 13 513 327 HOH HOH . 
P 4 HOH A 14 514 60 HOH HOH . 
P 4 HOH A 15 515 117 HOH HOH . 
P 4 HOH A 16 516 56 HOH HOH . 
P 4 HOH A 17 517 342 HOH HOH . 
P 4 HOH A 18 518 62 HOH HOH . 
P 4 HOH A 19 519 214 HOH HOH . 
P 4 HOH A 20 520 79 HOH HOH . 
P 4 HOH A 21 521 216 HOH HOH . 
P 4 HOH A 22 522 65 HOH HOH . 
P 4 HOH A 23 523 39 HOH HOH . 
P 4 HOH A 24 524 71 HOH HOH . 
P 4 HOH A 25 525 31 HOH HOH . 
P 4 HOH A 26 526 88 HOH HOH . 
P 4 HOH A 27 527 47 HOH HOH . 
P 4 HOH A 28 528 204 HOH HOH . 
P 4 HOH A 29 529 14 HOH HOH . 
P 4 HOH A 30 530 246 HOH HOH . 
P 4 HOH A 31 531 245 HOH HOH . 
P 4 HOH A 32 532 134 HOH HOH . 
P 4 HOH A 33 533 19 HOH HOH . 
P 4 HOH A 34 534 339 HOH HOH . 
P 4 HOH A 35 535 92 HOH HOH . 
P 4 HOH A 36 536 140 HOH HOH . 
P 4 HOH A 37 537 271 HOH HOH . 
P 4 HOH A 38 538 219 HOH HOH . 
P 4 HOH A 39 539 116 HOH HOH . 
P 4 HOH A 40 540 139 HOH HOH . 
P 4 HOH A 41 541 43 HOH HOH . 
P 4 HOH A 42 542 249 HOH HOH . 
P 4 HOH A 43 543 5 HOH HOH . 
P 4 HOH A 44 544 232 HOH HOH . 
P 4 HOH A 45 545 10 HOH HOH . 
P 4 HOH A 46 546 146 HOH HOH . 
P 4 HOH A 47 547 9 HOH HOH . 
P 4 HOH A 48 548 98 HOH HOH . 
P 4 HOH A 49 549 236 HOH HOH . 
P 4 HOH A 50 550 135 HOH HOH . 
P 4 HOH A 51 551 113 HOH HOH . 
P 4 HOH A 52 552 51 HOH HOH . 
P 4 HOH A 53 553 338 HOH HOH . 
P 4 HOH A 54 554 133 HOH HOH . 
P 4 HOH A 55 555 205 HOH HOH . 
P 4 HOH A 56 556 32 HOH HOH . 
P 4 HOH A 57 557 336 HOH HOH . 
P 4 HOH A 58 558 248 HOH HOH . 
P 4 HOH A 59 559 332 HOH HOH . 
P 4 HOH A 60 560 136 HOH HOH . 
P 4 HOH A 61 561 78 HOH HOH . 
P 4 HOH A 62 562 337 HOH HOH . 
P 4 HOH A 63 563 100 HOH HOH . 
P 4 HOH A 64 564 350 HOH HOH . 
P 4 HOH A 65 565 52 HOH HOH . 
P 4 HOH A 66 566 333 HOH HOH . 
P 4 HOH A 67 567 362 HOH HOH . 
P 4 HOH A 68 568 222 HOH HOH . 
P 4 HOH A 69 569 44 HOH HOH . 
P 4 HOH A 70 570 27 HOH HOH . 
P 4 HOH A 71 571 3 HOH HOH . 
P 4 HOH A 72 572 54 HOH HOH . 
P 4 HOH A 73 573 74 HOH HOH . 
P 4 HOH A 74 574 84 HOH HOH . 
P 4 HOH A 75 575 226 HOH HOH . 
P 4 HOH A 76 576 93 HOH HOH . 
P 4 HOH A 77 577 55 HOH HOH . 
P 4 HOH A 78 578 66 HOH HOH . 
P 4 HOH A 79 579 225 HOH HOH . 
P 4 HOH A 80 580 130 HOH HOH . 
P 4 HOH A 81 581 103 HOH HOH . 
P 4 HOH A 82 582 6 HOH HOH . 
P 4 HOH A 83 583 203 HOH HOH . 
P 4 HOH A 84 584 229 HOH HOH . 
P 4 HOH A 85 585 63 HOH HOH . 
P 4 HOH A 86 586 69 HOH HOH . 
P 4 HOH A 87 587 328 HOH HOH . 
P 4 HOH A 88 588 272 HOH HOH . 
P 4 HOH A 89 589 122 HOH HOH . 
P 4 HOH A 90 590 243 HOH HOH . 
P 4 HOH A 91 591 241 HOH HOH . 
P 4 HOH A 92 592 12 HOH HOH . 
P 4 HOH A 93 593 118 HOH HOH . 
P 4 HOH A 94 594 242 HOH HOH . 
P 4 HOH A 95 595 147 HOH HOH . 
P 4 HOH A 96 596 334 HOH HOH . 
P 4 HOH A 97 597 50 HOH HOH . 
P 4 HOH A 98 598 77 HOH HOH . 
P 4 HOH A 99 599 331 HOH HOH . 
P 4 HOH A 100 600 212 HOH HOH . 
P 4 HOH A 101 601 224 HOH HOH . 
P 4 HOH A 102 602 128 HOH HOH . 
P 4 HOH A 103 603 149 HOH HOH . 
P 4 HOH A 104 604 358 HOH HOH . 
P 4 HOH A 105 605 107 HOH HOH . 
P 4 HOH A 106 606 349 HOH HOH . 
P 4 HOH A 107 607 202 HOH HOH . 
P 4 HOH A 108 608 348 HOH HOH . 
P 4 HOH A 109 609 120 HOH HOH . 
P 4 HOH A 110 610 239 HOH HOH . 
P 4 HOH A 111 611 329 HOH HOH . 
P 4 HOH A 112 612 230 HOH HOH . 
P 4 HOH A 113 613 223 HOH HOH . 
P 4 HOH A 114 614 68 HOH HOH . 
P 4 HOH A 115 615 340 HOH HOH . 
P 4 HOH A 116 616 335 HOH HOH . 
P 4 HOH A 117 617 344 HOH HOH . 
P 4 HOH A 118 618 353 HOH HOH . 
P 4 HOH A 119 619 357 HOH HOH . 
P 4 HOH A 120 620 114 HOH HOH . 
P 4 HOH A 121 621 151 HOH HOH . 
P 4 HOH A 122 622 215 HOH HOH . 
P 4 HOH A 123 623 150 HOH HOH . 
P 4 HOH A 124 624 250 HOH HOH . 
P 4 HOH A 125 625 221 HOH HOH . 
P 4 HOH A 126 626 111 HOH HOH . 
P 4 HOH A 127 627 37 HOH HOH . 
P 4 HOH A 128 628 138 HOH HOH . 
P 4 HOH A 129 629 227 HOH HOH . 
P 4 HOH A 130 630 228 HOH HOH . 
Q 4 HOH B 1 501 251 HOH HOH . 
Q 4 HOH B 2 502 361 HOH HOH . 
Q 4 HOH B 3 503 238 HOH HOH . 
Q 4 HOH B 4 504 124 HOH HOH . 
Q 4 HOH B 5 505 211 HOH HOH . 
Q 4 HOH B 6 506 298 HOH HOH . 
Q 4 HOH B 7 507 25 HOH HOH . 
Q 4 HOH B 8 508 70 HOH HOH . 
Q 4 HOH B 9 509 73 HOH HOH . 
Q 4 HOH B 10 510 244 HOH HOH . 
Q 4 HOH B 11 511 293 HOH HOH . 
Q 4 HOH B 12 512 355 HOH HOH . 
Q 4 HOH B 13 513 112 HOH HOH . 
Q 4 HOH B 14 514 105 HOH HOH . 
Q 4 HOH B 15 515 80 HOH HOH . 
Q 4 HOH B 16 516 273 HOH HOH . 
Q 4 HOH B 17 517 49 HOH HOH . 
Q 4 HOH B 18 518 83 HOH HOH . 
Q 4 HOH B 19 519 75 HOH HOH . 
Q 4 HOH B 20 520 97 HOH HOH . 
Q 4 HOH B 21 521 29 HOH HOH . 
Q 4 HOH B 22 522 94 HOH HOH . 
Q 4 HOH B 23 523 64 HOH HOH . 
Q 4 HOH B 24 524 11 HOH HOH . 
Q 4 HOH B 25 525 95 HOH HOH . 
Q 4 HOH B 26 526 17 HOH HOH . 
Q 4 HOH B 27 527 137 HOH HOH . 
Q 4 HOH B 28 528 285 HOH HOH . 
Q 4 HOH B 29 529 13 HOH HOH . 
Q 4 HOH B 30 530 61 HOH HOH . 
Q 4 HOH B 31 531 91 HOH HOH . 
Q 4 HOH B 32 532 2 HOH HOH . 
Q 4 HOH B 33 533 351 HOH HOH . 
Q 4 HOH B 34 534 278 HOH HOH . 
Q 4 HOH B 35 535 323 HOH HOH . 
Q 4 HOH B 36 536 282 HOH HOH . 
Q 4 HOH B 37 537 82 HOH HOH . 
Q 4 HOH B 38 538 345 HOH HOH . 
Q 4 HOH B 39 539 286 HOH HOH . 
Q 4 HOH B 40 540 21 HOH HOH . 
Q 4 HOH B 41 541 343 HOH HOH . 
Q 4 HOH B 42 542 359 HOH HOH . 
Q 4 HOH B 43 543 33 HOH HOH . 
Q 4 HOH B 44 544 209 HOH HOH . 
Q 4 HOH B 45 545 276 HOH HOH . 
Q 4 HOH B 46 546 15 HOH HOH . 
Q 4 HOH B 47 547 277 HOH HOH . 
Q 4 HOH B 48 548 294 HOH HOH . 
Q 4 HOH B 49 549 90 HOH HOH . 
Q 4 HOH B 50 550 67 HOH HOH . 
Q 4 HOH B 51 551 143 HOH HOH . 
Q 4 HOH B 52 552 16 HOH HOH . 
Q 4 HOH B 53 553 26 HOH HOH . 
Q 4 HOH B 54 554 284 HOH HOH . 
Q 4 HOH B 55 555 296 HOH HOH . 
Q 4 HOH B 56 556 35 HOH HOH . 
Q 4 HOH B 57 557 347 HOH HOH . 
Q 4 HOH B 58 558 53 HOH HOH . 
Q 4 HOH B 59 559 317 HOH HOH . 
Q 4 HOH B 60 560 24 HOH HOH . 
Q 4 HOH B 61 561 57 HOH HOH . 
Q 4 HOH B 62 562 301 HOH HOH . 
Q 4 HOH B 63 563 115 HOH HOH . 
Q 4 HOH B 64 564 40 HOH HOH . 
Q 4 HOH B 65 565 89 HOH HOH . 
Q 4 HOH B 66 566 4 HOH HOH . 
Q 4 HOH B 67 567 18 HOH HOH . 
Q 4 HOH B 68 568 1 HOH HOH . 
Q 4 HOH B 69 569 354 HOH HOH . 
Q 4 HOH B 70 570 290 HOH HOH . 
Q 4 HOH B 71 571 324 HOH HOH . 
Q 4 HOH B 72 572 101 HOH HOH . 
Q 4 HOH B 73 573 268 HOH HOH . 
Q 4 HOH B 74 574 304 HOH HOH . 
Q 4 HOH B 75 575 269 HOH HOH . 
Q 4 HOH B 76 576 330 HOH HOH . 
Q 4 HOH B 77 577 36 HOH HOH . 
Q 4 HOH B 78 578 297 HOH HOH . 
Q 4 HOH B 79 579 309 HOH HOH . 
Q 4 HOH B 80 580 274 HOH HOH . 
Q 4 HOH B 81 581 300 HOH HOH . 
Q 4 HOH B 82 582 356 HOH HOH . 
Q 4 HOH B 83 583 289 HOH HOH . 
Q 4 HOH B 84 584 206 HOH HOH . 
Q 4 HOH B 85 585 48 HOH HOH . 
Q 4 HOH B 86 586 302 HOH HOH . 
Q 4 HOH B 87 587 287 HOH HOH . 
Q 4 HOH B 88 588 20 HOH HOH . 
Q 4 HOH B 89 589 310 HOH HOH . 
Q 4 HOH B 90 590 352 HOH HOH . 
Q 4 HOH B 91 591 99 HOH HOH . 
Q 4 HOH B 92 592 316 HOH HOH . 
Q 4 HOH B 93 593 326 HOH HOH . 
Q 4 HOH B 94 594 315 HOH HOH . 
Q 4 HOH B 95 595 45 HOH HOH . 
Q 4 HOH B 96 596 295 HOH HOH . 
Q 4 HOH B 97 597 299 HOH HOH . 
Q 4 HOH B 98 598 59 HOH HOH . 
Q 4 HOH B 99 599 58 HOH HOH . 
Q 4 HOH B 100 600 322 HOH HOH . 
Q 4 HOH B 101 601 96 HOH HOH . 
Q 4 HOH B 102 602 87 HOH HOH . 
Q 4 HOH B 103 603 305 HOH HOH . 
Q 4 HOH B 104 604 312 HOH HOH . 
Q 4 HOH B 105 605 308 HOH HOH . 
Q 4 HOH B 106 606 360 HOH HOH . 
Q 4 HOH B 107 607 280 HOH HOH . 
Q 4 HOH B 108 608 34 HOH HOH . 
Q 4 HOH B 109 609 275 HOH HOH . 
Q 4 HOH B 110 610 144 HOH HOH . 
Q 4 HOH B 111 611 42 HOH HOH . 
Q 4 HOH B 112 612 314 HOH HOH . 
Q 4 HOH B 113 613 320 HOH HOH . 
Q 4 HOH B 114 614 81 HOH HOH . 
Q 4 HOH B 115 615 132 HOH HOH . 
Q 4 HOH B 116 616 303 HOH HOH . 
Q 4 HOH B 117 617 270 HOH HOH . 
Q 4 HOH B 118 618 283 HOH HOH . 
Q 4 HOH B 119 619 313 HOH HOH . 
Q 4 HOH B 120 620 106 HOH HOH . 
Q 4 HOH B 121 621 281 HOH HOH . 
Q 4 HOH B 122 622 126 HOH HOH . 
Q 4 HOH B 123 623 237 HOH HOH . 
Q 4 HOH B 124 624 279 HOH HOH . 
Q 4 HOH B 125 625 325 HOH HOH . 
Q 4 HOH B 126 626 306 HOH HOH . 
Q 4 HOH B 127 627 129 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . L 2 35.566 39.395 45.525 1 53.78 ? C1 EDO 402 B 1 
HETATM 2 O O1 EDO . . . L 2 36.28 40.429 44.828 1 48.17 ? O1 EDO 402 B 1 
HETATM 3 C C2 EDO . . . L 2 34.838 39.966 46.728 1 62.52 ? C2 EDO 402 B 1 
HETATM 4 O O2 EDO . . . L 2 34.15 41.166 46.346 1 61.79 ? O2 EDO 402 B 1 
HETATM 5 H H11 EDO . . . L 2 34.845 38.929 44.849 1 64.48 ? H11 EDO 402 B 1 
HETATM 6 H H12 EDO . . . L 2 36.266 38.624 45.853 1 64.48 ? H12 EDO 402 B 1 
HETATM 7 H HO1 EDO . . . L 2 36.737 40.048 44.066 1 57.75 ? HO1 EDO 402 B 1 
HETATM 8 H H21 EDO . . . L 2 34.121 39.235 47.109 1 74.96 ? H21 EDO 402 B 1 
HETATM 9 H H22 EDO . . . L 2 35.554 40.188 47.523 1 74.96 ? H22 EDO 402 B 1 
HETATM 10 H HO2 EDO . . . L 2 33.687 41.53 47.112 1 74.09 ? HO2 EDO 402 B 1 
#
_model_server_stats.io_time_ms              19 
_model_server_stats.parse_time_ms           20 
_model_server_stats.create_model_time_ms    17 
_model_server_stats.query_time_ms           311 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           10 
#