data_6GBW # _model_server_result.job_id dWcBvhV16ozeiy4kcHx1Eg _model_server_result.datetime_utc '2024-12-27 17:23:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6gbw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":302}' # _entry.id 6GBW # _exptl.entry_id 6GBW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.58 _cell.angle_gamma 90 _cell.entry_id 6GBW _cell.length_a 69.84 _cell.length_b 71.119 _cell.length_c 72.858 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6GBW _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 E N N ? 5 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 9 L CYS 1 1_555 B SG CYS 119 H CYS 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf2 B SG CYS 28 H CYS 42 1_555 B SG CYS 44 H CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf3 B SG CYS 173 H CYS 168 1_555 B SG CYS 187 H CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf4 B SG CYS 201 H CYS 191 1_555 B SG CYS 231 H CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? covale ? covale1 C C GLU 9 I GLU 525 1_555 C N TYS 10 I TYS 526 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale2 C C TYS 10 I TYS 526 1_555 C N LEU 11 I LEU 527 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? metalc ? metalc1 B O LYS 174 H LYS 169 1_555 E NA NA . H NA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.364 ? metalc ? metalc2 B O THR 177 H THR 172 1_555 E NA NA . H NA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? metalc ? metalc3 B O PHE 215 H PHE 204 1_555 E NA NA . H NA 302 4_556 A ? ? ? ? ? ? ? ? ? ? ? 2.383 ? metalc ? metalc4 B O ARG 233 H ARG 221 1_555 F NA NA . H NA 303 1_555 A ? ? ? ? ? ? ? ? ? ? ? 2.334 ? metalc ? metalc5 B O LYS 236 H LYS 224 1_555 F NA NA . H NA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.407 ? metalc ? metalc6 E NA NA . H NA 302 1_555 K O HOH . H HOH 462 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.679 ? metalc ? metalc7 E NA NA . H NA 302 1_555 K O HOH . H HOH 507 4_546 ? ? ? ? ? ? ? ? ? ? ? ? 2.392 ? metalc ? metalc8 E NA NA . H NA 302 1_555 K O HOH . H HOH 540 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.425 ? metalc ? metalc9 F NA NA . H NA 303 1_555 K O HOH . H HOH 472 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.493 ? metalc ? metalc10 F NA NA . H NA 303 1_555 K O HOH . H HOH 490 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.662 ? metalc ? metalc11 F NA NA . H NA 303 1_555 K O HOH . H HOH 494 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.37 ? metalc ? metalc12 F NA NA . H NA 303 1_555 K O HOH . H HOH 560 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.374 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6GBW _atom_sites.fract_transf_matrix[1][1] 0.014318 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002675 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014061 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013963 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 NAG H 1 301 1 NAG NAG . E 5 NA H 1 302 2 NA NA . F 5 NA H 1 303 3 NA NA . G 6 DMS H 1 304 4 DMS DMS . H 6 DMS H 1 305 11 DMS DMS . I 7 EU5 H 1 306 1 EU5 210 . J 8 HOH L 1 101 180 HOH HOH . J 8 HOH L 2 102 191 HOH HOH . J 8 HOH L 3 103 240 HOH HOH . J 8 HOH L 4 104 117 HOH HOH . J 8 HOH L 5 105 51 HOH HOH . J 8 HOH L 6 106 56 HOH HOH . J 8 HOH L 7 107 108 HOH HOH . J 8 HOH L 8 108 40 HOH HOH . J 8 HOH L 9 109 21 HOH HOH . J 8 HOH L 10 110 61 HOH HOH . J 8 HOH L 11 111 32 HOH HOH . J 8 HOH L 12 112 43 HOH HOH . J 8 HOH L 13 113 185 HOH HOH . J 8 HOH L 14 114 238 HOH HOH . J 8 HOH L 15 115 63 HOH HOH . J 8 HOH L 16 116 184 HOH HOH . J 8 HOH L 17 117 94 HOH HOH . J 8 HOH L 18 118 29 HOH HOH . J 8 HOH L 19 119 239 HOH HOH . J 8 HOH L 20 120 90 HOH HOH . J 8 HOH L 21 121 12 HOH HOH . J 8 HOH L 22 122 104 HOH HOH . J 8 HOH L 23 123 179 HOH HOH . J 8 HOH L 24 124 254 HOH HOH . J 8 HOH L 25 125 105 HOH HOH . J 8 HOH L 26 126 250 HOH HOH . J 8 HOH L 27 127 113 HOH HOH . J 8 HOH L 28 128 279 HOH HOH . J 8 HOH L 29 129 103 HOH HOH . J 8 HOH L 30 130 241 HOH HOH . J 8 HOH L 31 131 280 HOH HOH . J 8 HOH L 32 132 270 HOH HOH . K 8 HOH H 1 401 247 HOH HOH . K 8 HOH H 2 402 268 HOH HOH . K 8 HOH H 3 403 223 HOH HOH . K 8 HOH H 4 404 142 HOH HOH . K 8 HOH H 5 405 49 HOH HOH . K 8 HOH H 6 406 50 HOH HOH . K 8 HOH H 7 407 101 HOH HOH . K 8 HOH H 8 408 97 HOH HOH . K 8 HOH H 9 409 213 HOH HOH . K 8 HOH H 10 410 136 HOH HOH . K 8 HOH H 11 411 156 HOH HOH . K 8 HOH H 12 412 68 HOH HOH . K 8 HOH H 13 413 71 HOH HOH . K 8 HOH H 14 414 119 HOH HOH . K 8 HOH H 15 415 124 HOH HOH . K 8 HOH H 16 416 91 HOH HOH . K 8 HOH H 17 417 181 HOH HOH . K 8 HOH H 18 418 188 HOH HOH . K 8 HOH H 19 419 69 HOH HOH . K 8 HOH H 20 420 135 HOH HOH . K 8 HOH H 21 421 58 HOH HOH . K 8 HOH H 22 422 109 HOH HOH . K 8 HOH H 23 423 39 HOH HOH . K 8 HOH H 24 424 79 HOH HOH . K 8 HOH H 25 425 77 HOH HOH . K 8 HOH H 26 426 138 HOH HOH . K 8 HOH H 27 427 220 HOH HOH . K 8 HOH H 28 428 100 HOH HOH . K 8 HOH H 29 429 125 HOH HOH . K 8 HOH H 30 430 154 HOH HOH . K 8 HOH H 31 431 131 HOH HOH . K 8 HOH H 32 432 67 HOH HOH . K 8 HOH H 33 433 1 HOH HOH . K 8 HOH H 34 434 190 HOH HOH . K 8 HOH H 35 435 216 HOH HOH . K 8 HOH H 36 436 14 HOH HOH . K 8 HOH H 37 437 202 HOH HOH . K 8 HOH H 38 438 53 HOH HOH . K 8 HOH H 39 439 120 HOH HOH . K 8 HOH H 40 440 86 HOH HOH . K 8 HOH H 41 441 16 HOH HOH . K 8 HOH H 42 442 44 HOH HOH . K 8 HOH H 43 443 234 HOH HOH . K 8 HOH H 44 444 129 HOH HOH . K 8 HOH H 45 445 137 HOH HOH . K 8 HOH H 46 446 165 HOH HOH . K 8 HOH H 47 447 42 HOH HOH . K 8 HOH H 48 448 6 HOH HOH . K 8 HOH H 49 449 168 HOH HOH . K 8 HOH H 50 450 7 HOH HOH . K 8 HOH H 51 451 255 HOH HOH . K 8 HOH H 52 452 87 HOH HOH . K 8 HOH H 53 453 66 HOH HOH . K 8 HOH H 54 454 20 HOH HOH . K 8 HOH H 55 455 183 HOH HOH . K 8 HOH H 56 456 294 HOH HOH . K 8 HOH H 57 457 282 HOH HOH . K 8 HOH H 58 458 19 HOH HOH . K 8 HOH H 59 459 18 HOH HOH . K 8 HOH H 60 460 288 HOH HOH . K 8 HOH H 61 461 17 HOH HOH . K 8 HOH H 62 462 60 HOH HOH . K 8 HOH H 63 463 28 HOH HOH . K 8 HOH H 64 464 130 HOH HOH . K 8 HOH H 65 465 22 HOH HOH . K 8 HOH H 66 466 123 HOH HOH . K 8 HOH H 67 467 232 HOH HOH . K 8 HOH H 68 468 155 HOH HOH . K 8 HOH H 69 469 31 HOH HOH . K 8 HOH H 70 470 48 HOH HOH . K 8 HOH H 71 471 41 HOH HOH . K 8 HOH H 72 472 4 HOH HOH . K 8 HOH H 73 473 201 HOH HOH . K 8 HOH H 74 474 34 HOH HOH . K 8 HOH H 75 475 212 HOH HOH . K 8 HOH H 76 476 70 HOH HOH . K 8 HOH H 77 477 37 HOH HOH . K 8 HOH H 78 478 2 HOH HOH . K 8 HOH H 79 479 65 HOH HOH . K 8 HOH H 80 480 5 HOH HOH . K 8 HOH H 81 481 13 HOH HOH . K 8 HOH H 82 482 231 HOH HOH . K 8 HOH H 83 483 206 HOH HOH . K 8 HOH H 84 484 78 HOH HOH . K 8 HOH H 85 485 45 HOH HOH . K 8 HOH H 86 486 195 HOH HOH . K 8 HOH H 87 487 143 HOH HOH . K 8 HOH H 88 488 266 HOH HOH . K 8 HOH H 89 489 92 HOH HOH . K 8 HOH H 90 490 62 HOH HOH . K 8 HOH H 91 491 297 HOH HOH . K 8 HOH H 92 492 9 HOH HOH . K 8 HOH H 93 493 46 HOH HOH . K 8 HOH H 94 494 59 HOH HOH . K 8 HOH H 95 495 15 HOH HOH . K 8 HOH H 96 496 152 HOH HOH . K 8 HOH H 97 497 35 HOH HOH . K 8 HOH H 98 498 88 HOH HOH . K 8 HOH H 99 499 114 HOH HOH . K 8 HOH H 100 500 47 HOH HOH . K 8 HOH H 101 501 10 HOH HOH . K 8 HOH H 102 502 122 HOH HOH . K 8 HOH H 103 503 161 HOH HOH . K 8 HOH H 104 504 24 HOH HOH . K 8 HOH H 105 505 11 HOH HOH . K 8 HOH H 106 506 30 HOH HOH . K 8 HOH H 107 507 23 HOH HOH . K 8 HOH H 108 508 54 HOH HOH . K 8 HOH H 109 509 73 HOH HOH . K 8 HOH H 110 510 82 HOH HOH . K 8 HOH H 111 511 187 HOH HOH . K 8 HOH H 112 512 96 HOH HOH . K 8 HOH H 113 513 72 HOH HOH . K 8 HOH H 114 514 257 HOH HOH . K 8 HOH H 115 515 196 HOH HOH . K 8 HOH H 116 516 177 HOH HOH . K 8 HOH H 117 517 64 HOH HOH . K 8 HOH H 118 518 3 HOH HOH . K 8 HOH H 119 519 205 HOH HOH . K 8 HOH H 120 520 150 HOH HOH . K 8 HOH H 121 521 128 HOH HOH . K 8 HOH H 122 522 8 HOH HOH . K 8 HOH H 123 523 219 HOH HOH . K 8 HOH H 124 524 160 HOH HOH . K 8 HOH H 125 525 80 HOH HOH . K 8 HOH H 126 526 264 HOH HOH . K 8 HOH H 127 527 256 HOH HOH . K 8 HOH H 128 528 99 HOH HOH . K 8 HOH H 129 529 115 HOH HOH . K 8 HOH H 130 530 171 HOH HOH . K 8 HOH H 131 531 27 HOH HOH . K 8 HOH H 132 532 126 HOH HOH . K 8 HOH H 133 533 224 HOH HOH . K 8 HOH H 134 534 203 HOH HOH . K 8 HOH H 135 535 102 HOH HOH . K 8 HOH H 136 536 207 HOH HOH . K 8 HOH H 137 537 52 HOH HOH . K 8 HOH H 138 538 107 HOH HOH . K 8 HOH H 139 539 76 HOH HOH . K 8 HOH H 140 540 26 HOH HOH . K 8 HOH H 141 541 133 HOH HOH . K 8 HOH H 142 542 98 HOH HOH . K 8 HOH H 143 543 173 HOH HOH . K 8 HOH H 144 544 95 HOH HOH . K 8 HOH H 145 545 274 HOH HOH . K 8 HOH H 146 546 110 HOH HOH . K 8 HOH H 147 547 81 HOH HOH . K 8 HOH H 148 548 174 HOH HOH . K 8 HOH H 149 549 144 HOH HOH . K 8 HOH H 150 550 197 HOH HOH . K 8 HOH H 151 551 140 HOH HOH . K 8 HOH H 152 552 298 HOH HOH . K 8 HOH H 153 553 169 HOH HOH . K 8 HOH H 154 554 251 HOH HOH . K 8 HOH H 155 555 215 HOH HOH . K 8 HOH H 156 556 164 HOH HOH . K 8 HOH H 157 557 162 HOH HOH . K 8 HOH H 158 558 300 HOH HOH . K 8 HOH H 159 559 89 HOH HOH . K 8 HOH H 160 560 175 HOH HOH . K 8 HOH H 161 561 277 HOH HOH . K 8 HOH H 162 562 273 HOH HOH . K 8 HOH H 163 563 147 HOH HOH . K 8 HOH H 164 564 275 HOH HOH . K 8 HOH H 165 565 112 HOH HOH . K 8 HOH H 166 566 252 HOH HOH . K 8 HOH H 167 567 284 HOH HOH . K 8 HOH H 168 568 287 HOH HOH . K 8 HOH H 169 569 246 HOH HOH . K 8 HOH H 170 570 281 HOH HOH . K 8 HOH H 171 571 132 HOH HOH . K 8 HOH H 172 572 148 HOH HOH . K 8 HOH H 173 573 149 HOH HOH . K 8 HOH H 174 574 176 HOH HOH . K 8 HOH H 175 575 249 HOH HOH . K 8 HOH H 176 576 157 HOH HOH . K 8 HOH H 177 577 291 HOH HOH . K 8 HOH H 178 578 283 HOH HOH . K 8 HOH H 179 579 285 HOH HOH . K 8 HOH H 180 580 163 HOH HOH . K 8 HOH H 181 581 167 HOH HOH . K 8 HOH H 182 582 278 HOH HOH . K 8 HOH H 183 583 296 HOH HOH . K 8 HOH H 184 584 158 HOH HOH . K 8 HOH H 185 585 289 HOH HOH . K 8 HOH H 186 586 83 HOH HOH . K 8 HOH H 187 587 269 HOH HOH . K 8 HOH H 188 588 145 HOH HOH . K 8 HOH H 189 589 227 HOH HOH . K 8 HOH H 190 590 226 HOH HOH . K 8 HOH H 191 591 258 HOH HOH . K 8 HOH H 192 592 116 HOH HOH . K 8 HOH H 193 593 170 HOH HOH . K 8 HOH H 194 594 75 HOH HOH . K 8 HOH H 195 595 293 HOH HOH . K 8 HOH H 196 596 242 HOH HOH . K 8 HOH H 197 597 193 HOH HOH . K 8 HOH H 198 598 192 HOH HOH . K 8 HOH H 199 599 127 HOH HOH . K 8 HOH H 200 600 214 HOH HOH . K 8 HOH H 201 601 194 HOH HOH . L 8 HOH I 1 601 139 HOH HOH . L 8 HOH I 2 602 186 HOH HOH . L 8 HOH I 3 603 243 HOH HOH . L 8 HOH I 4 604 244 HOH HOH . L 8 HOH I 5 605 204 HOH HOH . L 8 HOH I 6 606 198 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 5 _atom_site.Cartn_x 18.246 _atom_site.Cartn_y -15.131 _atom_site.Cartn_z 38.284 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 15.24 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 302 _atom_site.auth_asym_id H _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 229 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #