data_6GBY # _model_server_result.job_id pFlivutkJRbdttL5FMHh4g _model_server_result.datetime_utc '2024-11-07 15:44:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6gby # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":503}' # _entry.id 6GBY # _exptl.entry_id 6GBY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 46.005 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NITRITE ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6GBY _cell.length_a 96.87 _cell.length_b 96.87 _cell.length_c 96.87 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6GBY _symmetry.cell_setting ? _symmetry.Int_Tables_number 198 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 3' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E 1 1 A,B,C,D,E 1 2 A,B,C,D,E 1 3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_555 z+1/2,-x+1/2,-y 0 0 1 -1 0 0 0 -1 0 48.435 48.435 0 3 'crystal symmetry operation' 12_554 -y+1/2,-z,x-1/2 0 -1 0 0 0 -1 1 0 0 48.435 0 -48.435 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A ND1 HIS 133 A HIS 95 1_555 B CU CU . A CU 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.207 ? metalc ? metalc2 A NE2 HIS 138 A HIS 100 1_555 C CU CU . A CU 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? metalc ? metalc3 A NE2 HIS 173 A HIS 135 1_555 C CU CU . A CU 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.098 ? metalc ? metalc4 A SG CYS 174 A CYS 136 1_555 B CU CU . A CU 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.253 ? metalc ? metalc5 A SD MET 188 A MET 150 1_555 B CU CU . A CU 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.26 ? metalc ? metalc6 A NE2 HIS 344 A HIS 306 1_555 C CU CU . A CU 502 12_554 ? ? ? ? ? ? ? ? ? ? ? ? 2.157 ? metalc ? metalc7 C CU CU . A CU 502 1_555 D N NO2 . A NO2 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.138 ? metalc ? metalc8 C CU CU . A CU 502 1_555 D O2 NO2 . A NO2 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.983 ? metalc ? metalc9 C CU CU . A CU 502 1_555 D O1 NO2 . A NO2 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.264 ? # _chem_comp.formula 'N O2 -1' _chem_comp.formula_weight 46.005 _chem_comp.id NO2 _chem_comp.mon_nstd_flag . _chem_comp.name 'NITRITE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N O1 NO2 doub 237 n n N O2 NO2 sing 238 n n # _atom_sites.entry_id 6GBY _atom_sites.fract_transf_matrix[1][1] 0.010323 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010323 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010323 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CU A 1 501 501 CU CU . C 2 CU A 1 502 502 CU CU . D 3 NO2 A 1 503 1 NO2 NO2 . E 4 HOH A 1 601 101 HOH HOH . E 4 HOH A 2 602 40 HOH HOH . E 4 HOH A 3 603 116 HOH HOH . E 4 HOH A 4 604 35 HOH HOH . E 4 HOH A 5 605 18 HOH HOH . E 4 HOH A 6 606 60 HOH HOH . E 4 HOH A 7 607 77 HOH HOH . E 4 HOH A 8 608 68 HOH HOH . E 4 HOH A 9 609 53 HOH HOH . E 4 HOH A 10 610 19 HOH HOH . E 4 HOH A 11 611 27 HOH HOH . E 4 HOH A 12 612 126 HOH HOH . E 4 HOH A 13 613 91 HOH HOH . E 4 HOH A 14 614 16 HOH HOH . E 4 HOH A 15 615 2 HOH HOH . E 4 HOH A 16 616 30 HOH HOH . E 4 HOH A 17 617 26 HOH HOH . E 4 HOH A 18 618 122 HOH HOH . E 4 HOH A 19 619 146 HOH HOH . E 4 HOH A 20 620 10 HOH HOH . E 4 HOH A 21 621 47 HOH HOH . E 4 HOH A 22 622 23 HOH HOH . E 4 HOH A 23 623 109 HOH HOH . E 4 HOH A 24 624 28 HOH HOH . E 4 HOH A 25 625 42 HOH HOH . E 4 HOH A 26 626 41 HOH HOH . E 4 HOH A 27 627 127 HOH HOH . E 4 HOH A 28 628 9 HOH HOH . E 4 HOH A 29 629 6 HOH HOH . E 4 HOH A 30 630 150 HOH HOH . E 4 HOH A 31 631 15 HOH HOH . E 4 HOH A 32 632 85 HOH HOH . E 4 HOH A 33 633 31 HOH HOH . E 4 HOH A 34 634 34 HOH HOH . E 4 HOH A 35 635 51 HOH HOH . E 4 HOH A 36 636 33 HOH HOH . E 4 HOH A 37 637 64 HOH HOH . E 4 HOH A 38 638 4 HOH HOH . E 4 HOH A 39 639 100 HOH HOH . E 4 HOH A 40 640 128 HOH HOH . E 4 HOH A 41 641 131 HOH HOH . E 4 HOH A 42 642 21 HOH HOH . E 4 HOH A 43 643 61 HOH HOH . E 4 HOH A 44 644 3 HOH HOH . E 4 HOH A 45 645 25 HOH HOH . E 4 HOH A 46 646 1 HOH HOH . E 4 HOH A 47 647 65 HOH HOH . E 4 HOH A 48 648 5 HOH HOH . E 4 HOH A 49 649 120 HOH HOH . E 4 HOH A 50 650 20 HOH HOH . E 4 HOH A 51 651 32 HOH HOH . E 4 HOH A 52 652 62 HOH HOH . E 4 HOH A 53 653 63 HOH HOH . E 4 HOH A 54 654 134 HOH HOH . E 4 HOH A 55 655 121 HOH HOH . E 4 HOH A 56 656 108 HOH HOH . E 4 HOH A 57 657 97 HOH HOH . E 4 HOH A 58 658 103 HOH HOH . E 4 HOH A 59 659 145 HOH HOH . E 4 HOH A 60 660 113 HOH HOH . E 4 HOH A 61 661 70 HOH HOH . E 4 HOH A 62 662 111 HOH HOH . E 4 HOH A 63 663 13 HOH HOH . E 4 HOH A 64 664 52 HOH HOH . E 4 HOH A 65 665 129 HOH HOH . E 4 HOH A 66 666 17 HOH HOH . E 4 HOH A 67 667 75 HOH HOH . E 4 HOH A 68 668 57 HOH HOH . E 4 HOH A 69 669 43 HOH HOH . E 4 HOH A 70 670 50 HOH HOH . E 4 HOH A 71 671 124 HOH HOH . E 4 HOH A 72 672 104 HOH HOH . E 4 HOH A 73 673 148 HOH HOH . E 4 HOH A 74 674 59 HOH HOH . E 4 HOH A 75 675 136 HOH HOH . E 4 HOH A 76 676 22 HOH HOH . E 4 HOH A 77 677 11 HOH HOH . E 4 HOH A 78 678 14 HOH HOH . E 4 HOH A 79 679 137 HOH HOH . E 4 HOH A 80 680 82 HOH HOH . E 4 HOH A 81 681 39 HOH HOH . E 4 HOH A 82 682 69 HOH HOH . E 4 HOH A 83 683 147 HOH HOH . E 4 HOH A 84 684 114 HOH HOH . E 4 HOH A 85 685 44 HOH HOH . E 4 HOH A 86 686 66 HOH HOH . E 4 HOH A 87 687 7 HOH HOH . E 4 HOH A 88 688 105 HOH HOH . E 4 HOH A 89 689 67 HOH HOH . E 4 HOH A 90 690 139 HOH HOH . E 4 HOH A 91 691 79 HOH HOH . E 4 HOH A 92 692 142 HOH HOH . E 4 HOH A 93 693 93 HOH HOH . E 4 HOH A 94 694 37 HOH HOH . E 4 HOH A 95 695 98 HOH HOH . E 4 HOH A 96 696 118 HOH HOH . E 4 HOH A 97 697 36 HOH HOH . E 4 HOH A 98 698 45 HOH HOH . E 4 HOH A 99 699 86 HOH HOH . E 4 HOH A 100 700 99 HOH HOH . E 4 HOH A 101 701 29 HOH HOH . E 4 HOH A 102 702 102 HOH HOH . E 4 HOH A 103 703 46 HOH HOH . E 4 HOH A 104 704 56 HOH HOH . E 4 HOH A 105 705 48 HOH HOH . E 4 HOH A 106 706 38 HOH HOH . E 4 HOH A 107 707 106 HOH HOH . E 4 HOH A 108 708 143 HOH HOH . E 4 HOH A 109 709 80 HOH HOH . E 4 HOH A 110 710 24 HOH HOH . E 4 HOH A 111 711 58 HOH HOH . E 4 HOH A 112 712 84 HOH HOH . E 4 HOH A 113 713 12 HOH HOH . E 4 HOH A 114 714 95 HOH HOH . E 4 HOH A 115 715 132 HOH HOH . E 4 HOH A 116 716 133 HOH HOH . E 4 HOH A 117 717 71 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N NO2 . . . D 3 33.919 33.064 -8.411 1 25.3 ? N NO2 503 A 1 HETATM 2 O O1 NO2 . . . D 3 34.341 32.03 -7.885 1 21.66 ? O1 NO2 503 A 1 HETATM 3 O O2 NO2 . . . D 3 32.772 33.838 -8.054 1 22.57 ? O2 NO2 503 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 26 _model_server_stats.query_time_ms 332 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 3 #