data_6GCN # _model_server_result.job_id 1cia89YFqoBknJpI_sC4MQ _model_server_result.datetime_utc '2024-10-28 02:41:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6gcn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":703}' # _entry.id 6GCN # _exptl.entry_id 6GCN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 89.093 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ALANINE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6GCN _cell.length_a 197.55 _cell.length_b 197.55 _cell.length_c 323.92 _cell.Z_PDB 72 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6GCN _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA hexameric 6 author_and_software_defined_assembly 1 PISA hexameric 6 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,H,I,J,O 1 1,2,3 C,D,K,L,M,N,P,Q 2 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_675 -y+1,x-y+2,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 342.166637 0 3 'crystal symmetry operation' 3_465 -x+y-1,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 -296.325 171.083319 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 I N N ? 4 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 459 A CYS 588 1_555 A SG CYS 477 A CYS 606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf2 B SG CYS 459 B CYS 588 1_555 B SG CYS 477 B CYS 606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf3 C SG CYS 459 C CYS 588 1_555 C SG CYS 477 C CYS 606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf4 D SG CYS 459 D CYS 588 1_555 D SG CYS 477 D CYS 606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? metalc ? metalc1 A NE2 HIS 289 A HIS 418 1_555 F ZN ZN . A ZN 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.117 ? metalc ? metalc2 A NH1 ARG 314 A ARG 443 1_555 F ZN ZN . A ZN 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? metalc ? metalc3 A OD1 ASP 367 A ASP 496 1_555 F ZN ZN . A ZN 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? metalc ? metalc4 A OD2 ASP 367 A ASP 496 1_555 F ZN ZN . A ZN 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? metalc ? metalc5 F ZN ZN . A ZN 702 1_555 O O HOH . A HOH 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.116 ? metalc ? metalc6 B NE2 HIS 289 B HIS 418 1_555 H ZN ZN . B ZN 702 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.045 ? metalc ? metalc7 B NE2 HIS 289 B HIS 418 1_555 H ZN ZN . B ZN 702 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.046 ? metalc ? metalc8 B NE2 HIS 293 B HIS 422 1_555 H ZN ZN . B ZN 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? metalc ? metalc9 B OD1 ASP 367 B ASP 496 1_555 H ZN ZN . B ZN 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.098 ? metalc ? metalc10 B OD2 ASP 367 B ASP 496 1_555 H ZN ZN . B ZN 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? metalc ? metalc11 H ZN ZN . B ZN 702 1_555 J O ALA . B ALA 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.942 ? metalc ? metalc12 H ZN ZN . B ZN 702 1_555 J OXT ALA . B ALA 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? metalc ? metalc13 C NE2 HIS 289 C HIS 418 1_555 L ZN ZN . C ZN 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.118 ? metalc ? metalc14 C OD1 ASP 367 C ASP 496 1_555 L ZN ZN . C ZN 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? metalc ? metalc15 C OD2 ASP 367 C ASP 496 1_555 L ZN ZN . C ZN 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? metalc ? metalc16 L ZN ZN . C ZN 702 1_555 P O HOH . C HOH 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.109 ? metalc ? metalc17 D NE2 HIS 289 D HIS 418 1_555 N ZN ZN . D ZN 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? metalc ? metalc18 D NE2 HIS 293 D HIS 422 1_555 N ZN ZN . D ZN 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? metalc ? metalc19 D OD1 ASP 367 D ASP 496 1_555 N ZN ZN . D ZN 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? metalc ? metalc20 D OD2 ASP 367 D ASP 496 1_555 N ZN ZN . D ZN 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? metalc ? metalc21 N ZN ZN . D ZN 702 1_555 Q O HOH . D HOH 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.106 ? # _chem_comp.formula 'C3 H7 N O2' _chem_comp.formula_weight 89.093 _chem_comp.id ALA _chem_comp.mon_nstd_flag y _chem_comp.name ALANINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA ALA sing 45 n n N H ALA sing 46 n n N H2 ALA sing 47 n n CA C ALA sing 48 n n CA CB ALA sing 49 n n CA HA ALA sing 50 n n C O ALA doub 51 n n C OXT ALA sing 52 n n CB HB1 ALA sing 53 n n CB HB2 ALA sing 54 n n CB HB3 ALA sing 55 n n OXT HXT ALA sing 56 n n # _atom_sites.entry_id 6GCN _atom_sites.fract_transf_matrix[1][1] 0.005062 _atom_sites.fract_transf_matrix[1][2] 0.002923 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005845 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003087 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 ADP A 1 701 701 ADP ADP . F 3 ZN A 1 702 702 ZN ZN . G 2 ADP B 1 701 701 ADP ADP . H 3 ZN B 1 702 702 ZN ZN . I 4 ALA B 1 703 704 ALA ALA . J 4 ALA B 1 704 705 ALA ALA . K 2 ADP C 1 701 701 ADP ADP . L 3 ZN C 1 702 702 ZN ZN . M 2 ADP D 1 701 701 ADP ADP . N 3 ZN D 1 702 702 ZN ZN . O 5 HOH A 1 801 703 HOH HOH . P 5 HOH C 1 801 704 HOH HOH . P 5 HOH C 2 802 703 HOH HOH . Q 5 HOH D 1 801 703 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N ALA . . . I 4 -89.166 136.648 22.558 1 116.97 ? N ALA 703 B 1 HETATM 2 C CA ALA . . . I 4 -90.404 137.412 22.416 1 128.06 ? CA ALA 703 B 1 HETATM 3 C C ALA . . . I 4 -91.549 136.768 23.204 1 135.91 ? C ALA 703 B 1 HETATM 4 O O ALA . . . I 4 -91.389 135.685 23.777 1 129.56 ? O ALA 703 B 1 HETATM 5 C CB ALA . . . I 4 -90.778 137.539 20.942 1 103.58 ? CB ALA 703 B 1 HETATM 6 H HA ALA . . . I 4 -90.265 138.305 22.767 1 153.8 ? HA ALA 703 B 1 HETATM 7 H HB1 ALA . . . I 4 -91.601 138.048 20.868 1 124.43 ? HB1 ALA 703 B 1 HETATM 8 H HB2 ALA . . . I 4 -90.062 137.996 20.473 1 124.43 ? HB2 ALA 703 B 1 HETATM 9 H HB3 ALA . . . I 4 -90.903 136.651 20.57 1 124.43 ? HB3 ALA 703 B 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 28 _model_server_stats.query_time_ms 278 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 9 #