data_6GCR # _model_server_result.job_id TkTYYEBlMy8fnxdiF7miBw _model_server_result.datetime_utc '2024-11-15 15:01:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6gcr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":701}' # _entry.id 6GCR # _exptl.entry_id 6GCR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 577.034 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-[[2-[[4-[[[3,4-bis(oxidanylidene)-2-[2-(propanoylamino)ethylamino]cyclobuten-1-yl]amino]methyl]phenyl]amino]-5-chloranyl-pyrimidin-4-yl]amino]-~{N}-methyl-benzamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 94.81 _cell.angle_gamma 90 _cell.entry_id 6GCR _cell.length_a 46.088 _cell.length_b 44.9 _cell.length_c 66.4 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6GCR _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 17 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 427 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id CBB _struct_conn.ptnr2_label_comp_id EUW _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id EUW _struct_conn.ptnr2_auth_seq_id 701 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.766 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C28 H29 Cl N8 O4' _chem_comp.formula_weight 577.034 _chem_comp.id EUW _chem_comp.mon_nstd_flag . _chem_comp.name 2-[[2-[[4-[[[3,4-bis(oxidanylidene)-2-[2-(propanoylamino)ethylamino]cyclobuten-1-yl]amino]methyl]phenyl]amino]-5-chloranyl-pyrimidin-4-yl]amino]-~{N}-methyl-benzamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CBN NBM EUW sing 83 n n NBM CBK EUW sing 84 n n OBL CBK EUW doub 85 n n CBK CBF EUW sing 86 n n CL1 C5 EUW sing 87 n n C5 C6 EUW doub 88 n y C5 C4 EUW sing 89 n y C6 N1 EUW sing 90 n y CBF CBG EUW doub 91 n y CBF CBE EUW sing 92 n y NBD C4 EUW sing 93 n n NBD CBE EUW sing 94 n n C4 N3 EUW doub 95 n y CBG CBH EUW sing 96 n y N1 C2 EUW doub 97 n y CBE CBJ EUW doub 98 n y N3 C2 EUW sing 99 n y C2 NAG EUW sing 100 n n CBH CBI EUW doub 101 n y NAG CAH EUW sing 102 n n CBJ CBI EUW sing 103 n y CAM CAH EUW doub 104 n y CAM CAL EUW sing 105 n y CAH CAI EUW sing 106 n y CAL CAK EUW doub 107 n y CAI CAJ EUW doub 108 n y CAK CAJ EUW sing 109 n y CAK CAN EUW sing 110 n n OAT CAS EUW doub 111 n n CAN NAO EUW sing 112 n n CAS CAP EUW sing 113 n n CAS CAR EUW sing 114 n n NAO CAP EUW sing 115 n n CAP CAQ EUW doub 116 n n CAR OAU EUW doub 117 n n CAR CAQ EUW sing 118 n n CAQ NAV EUW sing 119 n n NAV CAW EUW sing 120 n n CAW CAX EUW sing 121 n n CAX NAY EUW sing 122 n n CBB CBA EUW sing 123 n n NAY CAZ EUW sing 124 n n CBA CAZ EUW sing 125 n n CAZ OBC EUW doub 126 n n C6 H1 EUW sing 127 n n CAI H2 EUW sing 128 n n CAJ H3 EUW sing 129 n n CAL H4 EUW sing 130 n n CAM H5 EUW sing 131 n n CAN H6 EUW sing 132 n n CAN H7 EUW sing 133 n n CAW H8 EUW sing 134 n n CAW H9 EUW sing 135 n n CAX H10 EUW sing 136 n n CAX H11 EUW sing 137 n n CBA H12 EUW sing 138 n n CBA H13 EUW sing 139 n n CBB H14 EUW sing 140 n n CBB H15 EUW sing 141 n n CBB H16 EUW sing 142 n n CBG H17 EUW sing 143 n n CBH H18 EUW sing 144 n n CBI H19 EUW sing 145 n n CBJ H20 EUW sing 146 n n CBN H21 EUW sing 147 n n CBN H22 EUW sing 148 n n CBN H23 EUW sing 149 n n NAG H24 EUW sing 150 n n NAO H25 EUW sing 151 n n NAV H26 EUW sing 152 n n NAY H27 EUW sing 153 n n NBD H28 EUW sing 154 n n NBM H29 EUW sing 155 n n # _atom_sites.entry_id 6GCR _atom_sites.fract_transf_matrix[1][1] 0.021698 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001826 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.022272 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015113 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EUW A 1 701 1 EUW DRG . C 3 HOH A 1 801 29 HOH HOH . C 3 HOH A 2 802 65 HOH HOH . C 3 HOH A 3 803 46 HOH HOH . C 3 HOH A 4 804 53 HOH HOH . C 3 HOH A 5 805 23 HOH HOH . C 3 HOH A 6 806 6 HOH HOH . C 3 HOH A 7 807 50 HOH HOH . C 3 HOH A 8 808 16 HOH HOH . C 3 HOH A 9 809 27 HOH HOH . C 3 HOH A 10 810 58 HOH HOH . C 3 HOH A 11 811 55 HOH HOH . C 3 HOH A 12 812 15 HOH HOH . C 3 HOH A 13 813 34 HOH HOH . C 3 HOH A 14 814 52 HOH HOH . C 3 HOH A 15 815 22 HOH HOH . C 3 HOH A 16 816 4 HOH HOH . C 3 HOH A 17 817 32 HOH HOH . C 3 HOH A 18 818 36 HOH HOH . C 3 HOH A 19 819 20 HOH HOH . C 3 HOH A 20 820 13 HOH HOH . C 3 HOH A 21 821 62 HOH HOH . C 3 HOH A 22 822 10 HOH HOH . C 3 HOH A 23 823 21 HOH HOH . C 3 HOH A 24 824 31 HOH HOH . C 3 HOH A 25 825 67 HOH HOH . C 3 HOH A 26 826 54 HOH HOH . C 3 HOH A 27 827 17 HOH HOH . C 3 HOH A 28 828 18 HOH HOH . C 3 HOH A 29 829 1 HOH HOH . C 3 HOH A 30 830 14 HOH HOH . C 3 HOH A 31 831 30 HOH HOH . C 3 HOH A 32 832 64 HOH HOH . C 3 HOH A 33 833 5 HOH HOH . C 3 HOH A 34 834 8 HOH HOH . C 3 HOH A 35 835 43 HOH HOH . C 3 HOH A 36 836 61 HOH HOH . C 3 HOH A 37 837 2 HOH HOH . C 3 HOH A 38 838 19 HOH HOH . C 3 HOH A 39 839 39 HOH HOH . C 3 HOH A 40 840 9 HOH HOH . C 3 HOH A 41 841 7 HOH HOH . C 3 HOH A 42 842 51 HOH HOH . C 3 HOH A 43 843 3 HOH HOH . C 3 HOH A 44 844 59 HOH HOH . C 3 HOH A 45 845 41 HOH HOH . C 3 HOH A 46 846 12 HOH HOH . C 3 HOH A 47 847 44 HOH HOH . C 3 HOH A 48 848 33 HOH HOH . C 3 HOH A 49 849 42 HOH HOH . C 3 HOH A 50 850 47 HOH HOH . C 3 HOH A 51 851 37 HOH HOH . C 3 HOH A 52 852 38 HOH HOH . C 3 HOH A 53 853 24 HOH HOH . C 3 HOH A 54 854 45 HOH HOH . C 3 HOH A 55 855 48 HOH HOH . C 3 HOH A 56 856 26 HOH HOH . C 3 HOH A 57 857 57 HOH HOH . C 3 HOH A 58 858 66 HOH HOH . C 3 HOH A 59 859 35 HOH HOH . C 3 HOH A 60 860 63 HOH HOH . C 3 HOH A 61 861 40 HOH HOH . C 3 HOH A 62 862 60 HOH HOH . C 3 HOH A 63 863 28 HOH HOH . C 3 HOH A 64 864 25 HOH HOH . C 3 HOH A 65 865 11 HOH HOH . C 3 HOH A 66 866 49 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 EUW . . . B 2 7.707 3.747 25.949 1 27.17 ? C4 EUW 701 A 1 HETATM 2 C C5 EUW . . . B 2 6.671 4.468 25.4 1 22.56 ? C5 EUW 701 A 1 HETATM 3 C C6 EUW . . . B 2 5.368 3.999 25.525 1 24.55 ? C6 EUW 701 A 1 HETATM 4 N N1 EUW . . . B 2 5.137 2.804 26.206 1 21.97 ? N1 EUW 701 A 1 HETATM 5 N N3 EUW . . . B 2 7.416 2.612 26.616 1 28.23 ? N3 EUW 701 A 1 HETATM 6 C C2 EUW . . . B 2 6.158 2.134 26.746 1 25.24 ? C2 EUW 701 A 1 HETATM 7 C CAH EUW . . . B 2 6.693 0.226 28.08 1 29.85 ? CAH EUW 701 A 1 HETATM 8 C CAI EUW . . . B 2 8.062 0.089 27.818 1 26.86 ? CAI EUW 701 A 1 HETATM 9 C CAJ EUW . . . B 2 8.839 -0.776 28.594 1 34.78 ? CAJ EUW 701 A 1 HETATM 10 C CAK EUW . . . B 2 8.28 -1.517 29.638 1 29.36 ? CAK EUW 701 A 1 HETATM 11 C CAL EUW . . . B 2 6.93 -1.375 29.862 1 28.79 ? CAL EUW 701 A 1 HETATM 12 C CAM EUW . . . B 2 6.133 -0.521 29.109 1 29.52 ? CAM EUW 701 A 1 HETATM 13 C CAN EUW . . . B 2 9.012 -2.444 30.431 1 36.63 ? CAN EUW 701 A 1 HETATM 14 C CAP EUW . . . B 2 9.768 -2.133 32.661 1 49.96 ? CAP EUW 701 A 1 HETATM 15 C CAQ EUW . . . B 2 10.547 -2.12 33.828 1 49.41 ? CAQ EUW 701 A 1 HETATM 16 C CAR EUW . . . B 2 9.403 -2.34 34.605 1 53.82 ? CAR EUW 701 A 1 HETATM 17 C CAS EUW . . . B 2 8.616 -2.357 33.452 1 52.33 ? CAS EUW 701 A 1 HETATM 18 C CAW EUW . . . B 2 12.717 -2.576 33.077 1 49.06 ? CAW EUW 701 A 1 HETATM 19 C CAX EUW . . . B 2 13.856 -1.623 32.673 1 49.76 ? CAX EUW 701 A 1 HETATM 20 C CAZ EUW . . . B 2 14.964 -0.45 34.552 1 53.49 ? CAZ EUW 701 A 1 HETATM 21 C CBA EUW . . . B 2 14.91 0.732 35.535 1 48.04 ? CBA EUW 701 A 1 HETATM 22 C CBB EUW . . . B 2 13.712 1.653 35.417 1 39.14 ? CBB EUW 701 A 1 HETATM 23 C CBE EUW . . . B 2 10.032 3.569 26.109 1 30.18 ? CBE EUW 701 A 1 HETATM 24 C CBF EUW . . . B 2 11.054 3.302 25.169 1 32.21 ? CBF EUW 701 A 1 HETATM 25 C CBG EUW . . . B 2 12.186 2.589 25.564 1 25.94 ? CBG EUW 701 A 1 HETATM 26 C CBH EUW . . . B 2 12.319 2.138 26.865 1 30.84 ? CBH EUW 701 A 1 HETATM 27 C CBI EUW . . . B 2 11.318 2.404 27.784 1 30.4 ? CBI EUW 701 A 1 HETATM 28 C CBJ EUW . . . B 2 10.18 3.126 27.425 1 33.11 ? CBJ EUW 701 A 1 HETATM 29 C CBK EUW . . . B 2 11.039 3.676 23.825 1 27.08 ? CBK EUW 701 A 1 HETATM 30 C CBN EUW . . . B 2 11.835 3.295 21.602 1 29.81 ? CBN EUW 701 A 1 HETATM 31 N NAG EUW . . . B 2 5.834 1.004 27.399 1 26.01 ? NAG EUW 701 A 1 HETATM 32 N NAO EUW . . . B 2 10.063 -1.96 31.346 1 42.44 ? NAO EUW 701 A 1 HETATM 33 N NAV EUW . . . B 2 11.848 -1.951 34.098 1 48.4 ? NAV EUW 701 A 1 HETATM 34 N NAY EUW . . . B 2 13.953 -0.531 33.672 1 47.54 ? NAY EUW 701 A 1 HETATM 35 N NBD EUW . . . B 2 8.94 4.267 25.745 1 24.33 ? NBD EUW 701 A 1 HETATM 36 N NBM EUW . . . B 2 11.804 2.929 23.035 1 29.54 ? NBM EUW 701 A 1 HETATM 37 O OAT EUW . . . B 2 7.401 -2.519 33.271 1 49.34 ? OAT EUW 701 A 1 HETATM 38 O OAU EUW . . . B 2 9.161 -2.479 35.81 1 55.04 ? OAU EUW 701 A 1 HETATM 39 O OBC EUW . . . B 2 15.899 -1.252 34.596 1 60.08 ? OBC EUW 701 A 1 HETATM 40 O OBL EUW . . . B 2 10.365 4.602 23.408 1 27.84 ? OBL EUW 701 A 1 HETATM 41 CL CL1 EUW . . . B 2 7.025 5.905 24.557 1 29.28 ? CL1 EUW 701 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 268 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 41 #